Wall clock time and date at job start Tue Mar 31 2020 23:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65600 * 120.00243 * 2 1 4 4 O 1.42101 * 104.27353 * 308.92793 * 3 2 1 5 5 O 1.42095 * 104.27775 * 181.07056 * 3 2 1 6 6 C 1.81398 * 104.44934 * 64.99550 * 3 2 1 7 7 C 1.52997 * 109.47181 * 180.02562 * 6 3 2 8 8 N 1.46505 * 109.47071 * 180.02562 * 7 6 3 9 9 C 1.34784 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99589 * 179.97438 * 9 8 7 12 12 C 1.39949 * 119.99788 * 185.31502 * 11 9 8 13 13 C 1.38861 * 120.06903 * 33.26678 * 12 11 9 14 14 C 1.38116 * 119.93328 * 180.02562 * 13 12 11 15 15 C 1.38287 * 120.06466 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92484 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46870 * 90.01056 * 16 15 14 18 18 H 1.07994 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99810 * 180.27354 * 17 16 15 20 20 N 1.31512 * 119.99706 * 179.72193 * 19 17 16 21 21 Si 1.86802 * 120.00276 * 359.72145 * 19 17 16 22 22 H 1.48494 * 109.47438 * 89.99785 * 21 19 17 23 23 H 1.48500 * 109.47222 * 210.00216 * 21 19 17 24 24 H 1.48496 * 109.46786 * 330.00050 * 21 19 17 25 25 C 1.38279 * 120.14016 * 0.24114 * 15 14 13 26 26 C 1.38115 * 120.07169 * 359.47888 * 25 15 14 27 27 H 1.09000 * 109.46844 * 60.00567 * 1 2 3 28 28 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47343 * 300.00250 * 1 2 3 30 30 H 0.97001 * 120.00213 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47244 * 60.00377 * 6 3 2 32 32 H 1.09005 * 109.47316 * 300.00637 * 6 3 2 33 33 H 1.08994 * 109.47104 * 60.00177 * 7 6 3 34 34 H 1.09004 * 109.47172 * 299.99782 * 7 6 3 35 35 H 0.96995 * 120.00061 * 359.97438 * 8 7 6 36 36 H 0.96997 * 120.00223 * 5.31353 * 11 9 8 37 37 H 1.08002 * 120.04104 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.96795 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47970 * 330.00567 * 16 15 14 40 40 H 1.09009 * 109.46993 * 210.00326 * 16 15 14 41 41 H 0.97006 * 119.99851 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.96119 * 179.72073 * 25 15 14 43 43 H 1.07994 * 120.03965 * 180.25449 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0257 6 6 1.8763 2.1974 1.5920 7 6 2.5889 3.5458 1.7131 8 7 2.2528 4.1620 2.9991 9 6 2.7691 5.3633 3.3262 10 8 3.5141 5.9353 2.5541 11 7 2.4596 5.9302 4.5090 12 6 2.9045 7.2243 4.8024 13 6 3.0260 8.1649 3.7881 14 6 3.4658 9.4410 4.0807 15 6 3.7855 9.7822 5.3822 16 6 4.2657 11.1753 5.6978 17 6 3.0841 12.0518 6.0248 18 1 2.0855 11.6412 6.0055 19 6 3.2777 13.3794 6.3426 20 7 2.2461 14.1456 6.6226 21 14 5.0050 14.0899 6.3754 22 1 5.3485 14.6186 5.0310 23 1 5.0691 15.1897 7.3711 24 1 5.9707 13.0259 6.7503 25 6 3.6708 8.8462 6.3935 26 6 3.2261 7.5701 6.1083 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 2.1957 1.5432 2.4032 32 1 0.7986 2.3497 1.6509 33 1 2.2692 4.1998 0.9019 34 1 3.6667 3.3939 1.6541 35 1 1.6582 3.7057 3.6148 36 1 1.9284 5.4414 5.1569 37 1 2.7769 7.8990 2.7714 38 1 3.5602 10.1732 3.2924 39 1 4.7924 11.5825 4.8348 40 1 4.9409 11.1419 6.5530 41 1 2.3822 15.0798 6.8458 42 1 3.9256 9.1145 7.4082 43 1 3.1327 6.8407 6.8992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477094271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:31 Heat of formation + Delta-G solvation = -70.066945 kcal Electronic energy + Delta-G solvation = -25945.324377 eV Core-core repulsion = 21924.984558 eV Total energy + Delta-G solvation = -4020.339818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62384 -38.52488 -37.68315 -36.53908 -35.99701 -35.64430 -34.87733 -33.00128 -31.65898 -30.43729 -30.30115 -27.01587 -26.64692 -24.41656 -22.86188 -22.39532 -21.27678 -20.21671 -19.95043 -18.73120 -18.41857 -17.47742 -17.21937 -16.78239 -16.74433 -16.24197 -15.52743 -15.43542 -14.92208 -14.85231 -14.69581 -14.36123 -14.11013 -13.95498 -13.48742 -13.23387 -12.95772 -12.88531 -12.67427 -12.62608 -12.54554 -12.43368 -12.28793 -12.22460 -11.67051 -11.64973 -11.46660 -10.87176 -10.49994 -10.40209 -10.25324 -10.17160 -9.91715 -9.59394 -9.52410 -9.29142 -8.56321 -8.32694 -7.39373 -6.05597 -4.04370 -0.42988 1.87353 2.02399 2.07941 2.40634 3.04825 3.16234 3.31188 3.38681 3.41985 3.54270 3.72091 3.97526 4.13910 4.31082 4.43749 4.45617 4.58563 4.75741 4.97902 5.04240 5.10117 5.12193 5.26257 5.38370 5.51986 5.85586 5.91397 5.95804 6.02737 6.13385 6.24668 6.45024 6.58543 6.82882 6.95142 6.97928 7.06901 7.10133 7.60495 7.63048 7.73174 7.74806 8.36637 8.51851 8.99873 9.55052 11.07322 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.001650 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.540193 B =16967.518266 C =17094.163896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.122 6.122 3 S 2.625 3.375 4 O -0.944 6.944 5 O -0.949 6.949 6 C -0.653 4.653 7 C 0.152 3.848 8 N -0.742 5.742 9 C 0.701 3.299 10 O -0.566 6.566 11 N -0.679 5.679 12 C 0.125 3.875 13 C -0.116 4.116 14 C -0.104 4.104 15 C -0.040 4.040 16 C 0.014 3.986 17 C -0.512 4.512 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.104 4.104 26 C -0.144 4.144 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.420 0.580 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.399 0.601 36 H 0.402 0.598 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.024 0.976 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.123 0.877 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -33.368 -8.401 34.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.713 3.287 4 O -0.934 6.934 5 O -0.939 6.939 6 C -0.780 4.780 7 C 0.025 3.975 8 N -0.400 5.400 9 C 0.401 3.599 10 O -0.442 6.442 11 N -0.326 5.326 12 C 0.033 3.967 13 C -0.136 4.136 14 C -0.122 4.122 15 C -0.041 4.041 16 C -0.023 4.023 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.123 4.123 26 C -0.165 4.165 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.254 0.746 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.233 0.767 36 H 0.237 0.763 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.075 -32.207 -9.797 33.910 hybrid contribution -0.132 -0.478 1.470 1.552 sum -4.208 -32.685 -8.327 33.991 Atomic orbital electron populations 1.21545 0.78550 1.04531 1.02091 1.55412 1.16119 1.24640 1.92057 1.04704 0.73759 0.73892 0.76327 1.93643 1.78790 1.72264 1.48711 1.93646 1.32334 1.81070 1.86817 1.30981 1.11887 1.08962 1.26195 1.20726 0.99923 0.89680 0.87136 1.44932 1.53630 1.20750 1.20653 1.15902 0.80772 0.80769 0.82450 1.90990 1.39140 1.63257 1.50806 1.42437 1.56628 1.16009 1.17556 1.17295 1.02622 0.82672 0.94158 1.21011 1.01453 0.92341 0.98836 1.20975 0.99286 0.95148 0.96838 1.20297 0.94975 0.96457 0.92326 1.18807 0.97387 0.89138 0.96965 1.20947 0.93395 0.93773 1.46877 0.90812 1.25002 0.96797 0.96882 0.94619 1.69903 1.29977 1.06676 1.47374 0.86800 0.85456 0.79035 0.78194 1.20165 1.21305 1.18908 1.20832 1.00023 0.92031 0.99414 1.20685 1.03655 0.97707 0.94413 0.91061 0.89770 0.92214 0.74621 0.84010 0.84192 0.89676 0.89752 0.76677 0.76334 0.85567 0.85957 0.95794 0.95400 0.92646 0.85900 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.10 11.03 59.84 0.66 0.76 16 2 N -1.12 -3.10 6.08 -16.64 -0.10 -3.20 16 3 S 2.62 15.01 5.46 -107.50 -0.59 14.43 16 4 O -0.94 -9.11 17.73 -57.54 -1.02 -10.13 16 5 O -0.95 -8.93 18.08 -57.54 -1.04 -9.97 16 6 C -0.65 -2.07 6.14 37.16 0.23 -1.84 16 7 C 0.15 1.14 5.68 -4.04 -0.02 1.12 16 8 N -0.74 -5.93 5.56 -65.22 -0.36 -6.29 16 9 C 0.70 9.04 8.30 -86.92 -0.72 8.31 16 10 O -0.57 -9.87 14.03 5.29 0.07 -9.79 16 11 N -0.68 -8.15 5.35 -14.22 -0.08 -8.23 16 12 C 0.13 2.02 6.28 -83.69 -0.53 1.50 16 13 C -0.12 -2.14 8.65 -39.40 -0.34 -2.48 16 14 C -0.10 -2.09 9.69 -39.61 -0.38 -2.48 16 15 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 16 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 17 C -0.51 -14.57 9.65 -34.44 -0.33 -14.90 16 18 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 21 Si 0.88 21.54 27.46 -169.99 -4.67 16.87 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.26 -6.21 6.55 56.52 0.37 -5.84 16 25 C -0.10 -1.96 9.69 -39.61 -0.38 -2.34 16 26 C -0.14 -2.28 9.96 -39.39 -0.39 -2.68 16 27 H 0.07 0.16 8.04 -51.93 -0.42 -0.25 16 28 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.06 -0.04 7.73 -51.93 -0.40 -0.44 16 30 H 0.42 0.59 8.92 -34.47 -0.31 0.29 16 31 H 0.14 0.12 8.14 -51.92 -0.42 -0.30 16 32 H 0.14 0.11 7.77 -51.92 -0.40 -0.29 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 1.67 8.49 -40.82 -0.35 1.33 16 36 H 0.40 3.18 8.83 -40.82 -0.36 2.82 16 37 H 0.13 2.33 6.41 -52.49 -0.34 1.99 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 40 H 0.03 0.66 7.15 -51.92 -0.37 0.29 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -40.78 378.15 -10.15 -50.93 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.88 Total: 0.85 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.96 Total: -14.31 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.23 Total: -44.57 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.99 Total: -29.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 15.01 SS G_CDS: -0.59 Total: 14.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.78 -10.15 -50.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477094271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.138 kcal (2) G-P(sol) polarization free energy of solvation -40.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds