Wall clock time and date at job start Wed Apr 1 2020 00:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47259 * 2 1 4 4 N 1.31234 * 124.05466 * 89.97187 * 3 2 1 5 5 N 1.27336 * 120.03850 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.74129 * 0.02562 * 5 4 3 7 7 C 1.38241 * 124.05354 * 269.97592 * 3 2 1 8 8 C 1.47179 * 128.47808 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99837 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99666 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46902 * 179.97438 * 11 10 8 13 13 N 1.46905 * 109.47301 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00048 * 66.04469 * 13 12 11 15 15 C 1.46897 * 111.00316 * 190.00148 * 13 12 11 16 16 C 1.50698 * 109.47282 * 169.99765 * 15 13 12 17 17 O 1.21288 * 120.00008 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99857 * 179.97438 * 16 15 13 19 19 C 1.37098 * 119.99792 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00099 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00231 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99347 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47391 * 59.99933 * 23 21 19 25 25 H 1.48496 * 109.47339 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47306 * 299.99769 * 23 21 19 27 27 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47298 * 300.00251 * 1 2 3 29 29 H 1.09013 * 109.47130 * 59.99875 * 1 2 3 30 30 H 1.08997 * 109.47298 * 239.99748 * 2 1 3 31 31 H 1.08998 * 109.47094 * 119.99606 * 2 1 3 32 32 H 0.97001 * 120.00005 * 359.97438 * 10 8 7 33 33 H 1.08993 * 109.47793 * 299.99917 * 11 10 8 34 34 H 1.09003 * 109.47026 * 60.00099 * 11 10 8 35 35 H 1.09001 * 109.47174 * 299.99963 * 12 11 10 36 36 H 1.08994 * 109.47731 * 60.00261 * 12 11 10 37 37 H 1.09001 * 109.46954 * 60.00226 * 14 13 12 38 38 H 1.09000 * 109.47078 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47181 * 300.00381 * 14 13 12 40 40 H 1.09005 * 109.46919 * 289.99787 * 15 13 12 41 41 H 1.09001 * 109.46991 * 49.99490 * 15 13 12 42 42 H 0.96996 * 120.00005 * 0.02562 * 18 16 15 43 43 H 0.96999 * 119.99279 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2768 2.1139 1.0873 5 7 2.6999 3.3116 0.9981 6 16 2.8409 3.7120 -0.5096 7 6 2.2909 2.1505 -1.1453 8 6 2.1446 1.7336 -2.5493 9 8 1.7490 0.6143 -2.8131 10 7 2.4492 2.5923 -3.5424 11 6 2.3041 2.1771 -4.9398 12 6 2.7118 3.3300 -5.8593 13 7 2.5658 2.9139 -7.2606 14 6 1.1547 2.6813 -7.5964 15 6 3.1672 3.9002 -8.1681 16 6 3.2196 3.3329 -9.5632 17 8 2.7969 2.2169 -9.7803 18 7 3.7350 4.0659 -10.5699 19 6 3.7821 3.5500 -11.8392 20 1 3.4066 2.5560 -12.0323 21 6 4.3140 4.3055 -12.8770 22 7 4.7714 5.5148 -12.6418 23 14 4.3789 3.6023 -14.6062 24 1 3.0023 3.2841 -15.0632 25 1 4.9874 4.5991 -15.5235 26 1 5.1992 2.3644 -14.6068 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7644 3.4852 -3.3319 33 1 2.9438 1.3157 -5.1312 34 1 1.2655 1.9085 -5.1331 35 1 2.0717 4.1912 -5.6678 36 1 3.7502 3.5991 -5.6662 37 1 0.5887 3.6002 -7.4439 38 1 1.0753 2.3740 -8.6392 39 1 0.7532 1.8966 -6.9552 40 1 2.5651 4.8089 -8.1677 41 1 4.1777 4.1338 -7.8326 42 1 4.0726 4.9585 -10.3963 43 1 5.1431 6.0421 -13.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663221644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:27 Heat of formation + Delta-G solvation = -19.416976 kcal Electronic energy + Delta-G solvation = -26102.427833 eV Core-core repulsion = 22116.577113 eV Total energy + Delta-G solvation = -3985.850720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15616 -40.75899 -40.28177 -38.17868 -36.09108 -35.64682 -35.34237 -33.24918 -32.00480 -30.58804 -29.18870 -28.47613 -26.98063 -25.62312 -24.78678 -23.28389 -22.37657 -21.41487 -20.93159 -19.83228 -19.53075 -18.66969 -17.71732 -17.33663 -17.22821 -16.75472 -16.54811 -16.33406 -16.07782 -15.70600 -15.50004 -15.38894 -15.15673 -14.99684 -14.64004 -14.36558 -14.05946 -13.74882 -13.56532 -13.42797 -13.17910 -13.01767 -12.92260 -12.56042 -12.52859 -12.42927 -12.39182 -12.15512 -12.08430 -11.95536 -11.53630 -11.42736 -11.17826 -10.99013 -10.84838 -10.26989 -10.23474 -9.96629 -9.20924 -8.43953 -5.91827 -1.41008 -0.29739 0.36197 0.78559 1.41218 1.43302 1.53445 1.70660 1.79573 2.10074 2.31217 2.73187 2.89111 3.23478 3.40636 3.45487 3.60255 3.86304 4.05650 4.09019 4.28350 4.31027 4.33873 4.39845 4.50013 4.56706 4.67151 4.67941 4.78044 4.85535 4.95764 4.99720 5.10231 5.16915 5.25862 5.30059 5.43949 5.87446 6.07260 6.18186 6.23941 6.54009 6.64586 6.90759 7.16781 7.61027 8.17458 8.73063 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.001702 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.543498 B =16442.780948 C =17165.398479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C 0.100 3.900 4 N -0.272 5.272 5 N -0.284 5.284 6 S 0.508 5.492 7 C -0.310 4.310 8 C 0.604 3.396 9 O -0.540 6.540 10 N -0.704 5.704 11 C 0.130 3.870 12 C 0.048 3.952 13 N -0.538 5.538 14 C 0.023 3.977 15 C 0.060 3.940 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.414 0.586 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.397 0.603 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 0.763 25.935 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.048 4.048 4 N -0.136 5.136 5 N -0.265 5.265 6 S 0.644 5.356 7 C -0.450 4.450 8 C 0.388 3.612 9 O -0.418 6.418 10 N -0.357 5.357 11 C 0.007 3.993 12 C -0.080 4.080 13 N -0.263 5.263 14 C -0.125 4.125 15 C -0.071 4.071 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.199 1.199 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.230 0.770 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.132 0.498 26.533 26.857 hybrid contribution -0.417 0.053 -1.354 1.417 sum -4.549 0.551 25.179 25.593 Atomic orbital electron populations 1.21630 0.92777 1.03539 1.01513 1.20357 0.97391 0.86003 1.05206 1.23196 0.96277 1.00243 0.85126 1.70679 1.15015 0.99350 1.28586 1.78650 1.19101 1.10741 1.18022 1.82134 1.43144 1.11264 0.99019 1.27720 1.16072 1.02002 0.99256 1.16478 0.77713 0.84644 0.82388 1.90837 1.46753 1.20770 1.83466 1.45582 1.67286 1.17115 1.05729 1.21236 1.02122 0.97908 0.78072 1.22291 1.03646 0.95824 0.86219 1.61317 1.17431 1.45398 1.02132 1.22485 0.87015 1.00402 1.02581 1.21739 1.02437 0.93407 0.89480 1.20864 0.82353 0.86511 0.87595 1.90477 1.52752 1.22015 1.84929 1.41922 1.54995 1.17157 1.07191 1.19593 1.39728 1.01473 0.85287 0.90434 1.25984 0.96066 0.95793 1.03424 1.69660 1.41145 1.10242 1.35040 0.85029 0.78613 0.77912 0.77040 1.19815 1.19582 1.19882 0.89860 0.92353 0.93528 0.88461 0.88236 0.74877 0.91470 0.91329 0.91760 0.88040 0.94619 0.92697 0.90519 0.90878 0.86615 0.76954 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.25 16 2 C -0.05 -0.77 5.95 29.85 0.18 -0.60 16 3 C 0.10 1.80 6.25 42.65 0.27 2.07 16 4 N -0.27 -5.41 11.54 -48.18 -0.56 -5.96 16 5 N -0.28 -5.03 12.51 37.02 0.46 -4.57 16 6 S 0.51 5.32 23.05 -56.49 -1.30 4.02 16 7 C -0.31 -4.89 6.81 24.62 0.17 -4.72 16 8 C 0.60 11.11 7.80 86.59 0.68 11.79 16 9 O -0.54 -13.67 14.89 -4.08 -0.06 -13.73 16 10 N -0.70 -9.65 5.55 -466.64 -2.59 -12.25 16 11 C 0.13 2.37 5.60 86.38 0.48 2.86 16 12 C 0.05 0.83 5.07 86.30 0.44 1.26 16 13 N -0.54 -15.11 4.50 -927.04 -4.17 -19.28 16 14 C 0.02 0.67 8.96 127.69 1.14 1.81 16 15 C 0.06 1.84 5.45 85.56 0.47 2.31 16 16 C 0.44 19.89 7.48 87.66 0.66 20.54 16 17 O -0.62 -32.91 13.91 -3.06 -0.04 -32.95 16 18 N -0.57 -28.41 5.29 -306.99 -1.62 -30.03 16 19 C -0.33 -18.41 9.68 84.04 0.81 -17.59 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 23 Si 0.99 42.37 29.55 68.60 2.03 44.40 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 1.76 6.47 -2.39 -0.02 1.74 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.41 2.90 7.90 -92.71 -0.73 2.16 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.39 6.55 -2.39 -0.02 1.38 16 35 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 36 H 0.10 1.38 7.93 -2.39 -0.02 1.36 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 2.10 5.82 -2.39 -0.01 2.09 16 39 H 0.08 1.97 6.47 -2.39 -0.02 1.96 16 40 H 0.07 1.92 8.12 -2.38 -0.02 1.90 16 41 H 0.12 2.96 7.93 -2.39 -0.02 2.94 16 42 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 43 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -73.15 377.13 -1.50 -74.65 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.39 Total: 25.73 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.47 Total: 18.26 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -8.20 Total: -120.37 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.10 Total: -46.69 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.30 Total: 4.02 kcal Total: -73.15 -1.50 -74.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663221644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.231 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds