Wall clock time and date at job start Wed Apr 1 2020 00:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33322 * 126.81297 * 2 1 4 4 N 1.28513 * 109.43651 * 179.97438 * 3 2 1 5 5 N 1.28719 * 110.64270 * 359.97438 * 4 3 2 6 6 H 0.96993 * 126.03165 * 180.02562 * 5 4 3 7 7 C 1.37007 * 126.81348 * 179.97438 * 2 1 3 8 8 C 1.47235 * 127.19079 * 359.76216 * 7 2 1 9 9 O 1.21620 * 119.99737 * 103.81125 * 8 7 2 10 10 N 1.34770 * 119.99871 * 283.81198 * 8 7 2 11 11 C 1.46497 * 120.00337 * 4.99512 * 10 8 7 12 12 C 1.46500 * 120.00030 * 184.98972 * 10 8 7 13 13 C 1.53002 * 109.47207 * 90.00047 * 12 10 8 14 14 C 1.52997 * 109.47185 * 180.02562 * 13 12 10 15 15 N 1.46503 * 109.46899 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00154 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99767 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00144 * 180.02562 * 16 15 14 19 19 S 1.81006 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99812 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99925 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99960 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99873 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00097 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47272 * 59.99766 * 24 22 20 26 26 H 1.48498 * 109.47331 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46741 * 299.99980 * 24 22 20 28 28 H 1.09000 * 109.47407 * 270.02713 * 1 2 3 29 29 H 1.09004 * 109.46873 * 30.03151 * 1 2 3 30 30 H 1.09000 * 109.47261 * 150.02650 * 1 2 3 31 31 H 1.09001 * 109.47491 * 94.43871 * 11 10 8 32 32 H 1.09001 * 109.47171 * 214.44113 * 11 10 8 33 33 H 1.09005 * 109.47275 * 334.43873 * 11 10 8 34 34 H 1.08998 * 109.47692 * 210.00556 * 12 10 8 35 35 H 1.09004 * 109.47179 * 330.00133 * 12 10 8 36 36 H 1.08998 * 109.47210 * 300.00805 * 13 12 10 37 37 H 1.08999 * 109.46530 * 60.00069 * 13 12 10 38 38 H 1.08997 * 109.47243 * 299.99760 * 14 13 12 39 39 H 1.09004 * 109.47026 * 60.00768 * 14 13 12 40 40 H 0.97007 * 119.99861 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47404 * 300.00077 * 18 16 15 42 42 H 1.08996 * 109.47441 * 60.00164 * 18 16 15 43 43 H 0.97001 * 119.99771 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6836 0.0005 5 7 3.6057 -0.6015 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3279 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0060 9 8 1.9930 -3.1690 -1.0152 10 7 1.4724 -3.0798 1.1426 11 6 1.2834 -2.2634 2.3442 12 6 1.1724 -4.5134 1.1765 13 6 2.4263 -5.2872 1.5886 14 6 2.1132 -6.7844 1.6234 15 7 3.3140 -7.5254 2.0174 16 6 3.2747 -8.8689 2.1164 17 8 2.2453 -9.4646 1.8787 18 6 4.5097 -9.6311 2.5222 19 16 4.1393 -11.4024 2.5633 20 6 5.7109 -12.0323 3.0512 21 1 6.5338 -11.3549 3.2253 22 6 5.8909 -13.3990 3.2129 23 7 4.8876 -14.2245 3.0022 24 14 7.5568 -14.0669 3.7309 25 1 7.9299 -13.4972 5.0506 26 1 7.4870 -15.5467 3.8330 27 1 8.5778 -13.6874 2.7215 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 0.2470 -1.9300 2.3976 32 1 1.5203 -2.8565 3.2274 33 1 1.9423 -1.3960 2.3015 34 1 0.3764 -4.7011 1.8970 35 1 0.8519 -4.8410 0.1875 36 1 3.2224 -5.0995 0.8681 37 1 2.7467 -4.9596 2.5776 38 1 1.3171 -6.9725 2.3438 39 1 1.7931 -7.1118 0.6342 40 1 4.1373 -7.0489 2.2078 41 1 5.3058 -9.4434 1.8017 42 1 4.8302 -9.3036 3.5112 43 1 5.0133 -15.1796 3.1156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743374708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:04 Heat of formation + Delta-G solvation = 19.465034 kcal Electronic energy + Delta-G solvation = -25815.470993 eV Core-core repulsion = 21831.306324 eV Total energy + Delta-G solvation = -3984.164669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.93796 -40.43856 -39.20839 -36.80531 -35.18995 -34.55945 -33.22089 -32.45416 -31.91456 -29.41022 -28.59124 -27.53613 -26.17121 -25.47530 -24.12331 -22.80833 -22.02808 -20.70606 -20.22104 -18.81206 -17.89504 -17.81061 -17.15552 -16.63170 -16.37226 -15.98398 -15.75797 -15.67378 -14.82748 -14.70144 -14.43431 -14.37014 -13.92048 -13.88246 -13.56638 -13.26254 -13.20161 -13.13597 -12.89589 -12.78052 -12.55716 -12.49528 -12.01272 -11.89341 -11.72140 -11.25778 -11.14433 -11.07178 -11.05918 -10.81510 -10.78445 -9.85542 -9.80742 -9.58706 -9.35750 -9.09019 -8.96096 -8.27192 -6.52933 -6.23885 -3.94867 0.59433 1.35803 1.75720 2.03237 2.41858 3.00261 3.04743 3.21462 3.25654 3.28883 3.55403 3.67519 3.79734 4.14547 4.18138 4.35541 4.44897 4.56023 4.56870 4.63791 4.82863 4.95192 4.97370 5.02270 5.06333 5.11187 5.13300 5.15602 5.22365 5.40413 5.55291 5.56211 5.67270 5.73636 5.85552 5.86430 6.04962 6.09659 6.48002 6.53408 7.25588 7.56674 7.63170 7.72704 8.32482 8.55429 9.21235 10.83476 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.001573 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.503024 B =17793.139378 C =18383.498842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.028 3.972 3 N -0.261 5.261 4 N -0.052 5.052 5 N -0.366 5.366 6 H 0.455 0.545 7 C -0.054 4.054 8 C 0.592 3.408 9 O -0.508 6.508 10 N -0.598 5.598 11 C 0.073 3.927 12 C 0.117 3.883 13 C -0.147 4.147 14 C 0.124 3.876 15 N -0.740 5.740 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 30.435 -1.532 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 N -0.128 5.128 4 N -0.032 5.032 5 N -0.090 5.090 6 H 0.302 0.698 7 C -0.190 4.190 8 C 0.375 3.625 9 O -0.380 6.380 10 N -0.331 5.331 11 C -0.069 4.069 12 C -0.006 4.006 13 C -0.186 4.186 14 C 0.000 4.000 15 N -0.395 5.395 16 C 0.318 3.682 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.451 30.262 -2.488 31.519 hybrid contribution 2.832 -0.721 0.771 3.023 sum -5.619 29.542 -1.717 30.121 Atomic orbital electron populations 1.20237 0.85166 1.04356 1.03668 1.22265 0.98361 0.87061 1.03466 1.74887 0.95212 1.25890 1.16833 1.78247 1.15777 0.91824 1.17380 1.45388 1.08419 1.06729 1.48493 0.69840 1.21783 0.86038 0.96360 1.14863 1.16887 0.78386 0.83475 0.83798 1.90923 1.52970 1.62501 1.31629 1.47718 1.65039 1.09682 1.10681 1.21941 1.02444 0.95630 0.86935 1.21531 0.97167 0.77339 1.04542 1.22145 0.99015 0.94747 1.02662 1.21119 0.88454 0.89167 1.01296 1.45971 1.13854 1.06979 1.72673 1.20315 0.90169 0.81390 0.76351 1.90708 1.32497 1.68091 1.47744 1.23533 0.98046 1.04794 1.04073 1.85402 1.17501 0.90456 1.89932 1.22826 0.96998 0.94814 1.53911 0.90985 1.24989 0.97883 0.95797 0.94870 1.70004 1.30809 1.03595 1.45825 0.86223 0.82360 0.77791 0.79117 1.19955 1.20775 1.19943 0.89764 0.89465 0.90348 0.91350 0.90110 0.91191 0.89031 0.88591 0.90898 0.90906 0.91324 0.91243 0.76897 0.89232 0.89239 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.28 36.00 0.37 0.04 16 2 C 0.03 0.21 6.96 -82.39 -0.57 -0.37 16 3 N -0.26 -2.45 12.35 33.51 0.41 -2.04 16 4 N -0.05 -0.45 13.35 60.35 0.81 0.35 16 5 N -0.37 -2.32 7.07 33.31 0.24 -2.08 16 6 H 0.45 1.49 8.96 -190.33 -1.71 -0.21 16 7 C -0.05 -0.39 5.18 -82.33 -0.43 -0.81 16 8 C 0.59 4.56 7.30 -12.61 -0.09 4.47 16 9 O -0.51 -5.86 16.66 5.26 0.09 -5.77 16 10 N -0.60 -3.14 2.87 -182.92 -0.53 -3.66 16 11 C 0.07 0.20 10.27 59.85 0.61 0.82 16 12 C 0.12 0.65 5.47 -4.04 -0.02 0.62 16 13 C -0.15 -0.94 5.65 -26.73 -0.15 -1.09 16 14 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 15 N -0.74 -9.11 5.56 -60.29 -0.33 -9.44 16 16 C 0.53 9.60 7.85 -10.99 -0.09 9.51 16 17 O -0.52 -11.47 15.86 5.55 0.09 -11.38 16 18 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 24 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.33 8.03 -51.93 -0.42 -0.09 16 31 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.08 0.14 8.11 -51.93 -0.42 -0.28 16 33 H 0.07 0.22 6.49 -51.93 -0.34 -0.11 16 34 H 0.09 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.10 0.68 7.36 -51.93 -0.38 0.30 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -38.59 389.05 -7.22 -45.80 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -7.38 Total: -3.49 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 0.03 Total: -1.28 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 1.33 Total: -42.11 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.18 Total: -17.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.59 -7.22 -45.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743374708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.266 kcal (2) G-P(sol) polarization free energy of solvation -38.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds