Wall clock time and date at job start Wed Apr 1 2020 00:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33322 * 126.81297 * 2 1 4 4 N 1.28513 * 109.43651 * 179.97438 * 3 2 1 5 5 N 1.28719 * 110.64270 * 359.97438 * 4 3 2 6 6 H 0.96993 * 126.03165 * 180.02562 * 5 4 3 7 7 C 1.37007 * 126.81348 * 179.97438 * 2 1 3 8 8 C 1.47235 * 127.19079 * 359.76216 * 7 2 1 9 9 O 1.21620 * 119.99737 * 103.81125 * 8 7 2 10 10 N 1.34770 * 119.99871 * 283.81198 * 8 7 2 11 11 C 1.46497 * 120.00337 * 4.99512 * 10 8 7 12 12 C 1.46500 * 120.00030 * 184.98972 * 10 8 7 13 13 C 1.53002 * 109.47207 * 90.00047 * 12 10 8 14 14 C 1.52997 * 109.47185 * 180.02562 * 13 12 10 15 15 N 1.46503 * 109.46899 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00154 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99767 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00144 * 180.02562 * 16 15 14 19 19 S 1.81006 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99812 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99925 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99960 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99873 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00097 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47272 * 59.99766 * 24 22 20 26 26 H 1.48498 * 109.47331 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46741 * 299.99980 * 24 22 20 28 28 H 1.09000 * 109.47407 * 270.02713 * 1 2 3 29 29 H 1.09004 * 109.46873 * 30.03151 * 1 2 3 30 30 H 1.09000 * 109.47261 * 150.02650 * 1 2 3 31 31 H 1.09001 * 109.47491 * 94.43871 * 11 10 8 32 32 H 1.09001 * 109.47171 * 214.44113 * 11 10 8 33 33 H 1.09005 * 109.47275 * 334.43873 * 11 10 8 34 34 H 1.08998 * 109.47692 * 210.00556 * 12 10 8 35 35 H 1.09004 * 109.47179 * 330.00133 * 12 10 8 36 36 H 1.08998 * 109.47210 * 300.00805 * 13 12 10 37 37 H 1.08999 * 109.46530 * 60.00069 * 13 12 10 38 38 H 1.08997 * 109.47243 * 299.99760 * 14 13 12 39 39 H 1.09004 * 109.47026 * 60.00768 * 14 13 12 40 40 H 0.97007 * 119.99861 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47404 * 300.00077 * 18 16 15 42 42 H 1.08996 * 109.47441 * 60.00164 * 18 16 15 43 43 H 0.97001 * 119.99771 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6836 0.0005 5 7 3.6057 -0.6015 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3279 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0060 9 8 1.9930 -3.1690 -1.0152 10 7 1.4724 -3.0798 1.1426 11 6 1.2834 -2.2634 2.3442 12 6 1.1724 -4.5134 1.1765 13 6 2.4263 -5.2872 1.5886 14 6 2.1132 -6.7844 1.6234 15 7 3.3140 -7.5254 2.0174 16 6 3.2747 -8.8689 2.1164 17 8 2.2453 -9.4646 1.8787 18 6 4.5097 -9.6311 2.5222 19 16 4.1393 -11.4024 2.5633 20 6 5.7109 -12.0323 3.0512 21 1 6.5338 -11.3549 3.2253 22 6 5.8909 -13.3990 3.2129 23 7 4.8876 -14.2245 3.0022 24 14 7.5568 -14.0669 3.7309 25 1 7.9299 -13.4972 5.0506 26 1 7.4870 -15.5467 3.8330 27 1 8.5778 -13.6874 2.7215 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 0.2470 -1.9300 2.3976 32 1 1.5203 -2.8565 3.2274 33 1 1.9423 -1.3960 2.3015 34 1 0.3764 -4.7011 1.8970 35 1 0.8519 -4.8410 0.1875 36 1 3.2224 -5.0995 0.8681 37 1 2.7467 -4.9596 2.5776 38 1 1.3171 -6.9725 2.3438 39 1 1.7931 -7.1118 0.6342 40 1 4.1373 -7.0489 2.2078 41 1 5.3058 -9.4434 1.8017 42 1 4.8302 -9.3036 3.5112 43 1 5.0133 -15.1796 3.1156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001743374708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:03 Heat of formation + Delta-G solvation = -11.159567 kcal Electronic energy + Delta-G solvation = -25816.798976 eV Core-core repulsion = 21831.306324 eV Total energy + Delta-G solvation = -3985.492652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.49822 -41.03853 -40.55219 -37.47559 -36.13410 -35.09502 -34.58685 -33.88530 -32.75753 -30.70316 -29.06041 -28.01584 -27.65361 -26.79415 -24.76351 -23.42835 -22.64345 -21.81818 -20.96724 -19.82591 -19.30920 -18.38985 -17.82308 -17.70547 -17.34235 -16.88823 -16.87809 -16.73581 -16.42115 -15.83357 -15.68134 -14.97744 -14.87676 -14.66360 -14.38916 -14.26071 -13.98615 -13.89136 -13.64108 -13.38169 -13.29664 -13.17196 -13.12170 -13.07748 -12.86471 -12.69837 -12.60975 -12.27710 -11.86685 -11.75094 -11.70129 -11.43412 -11.13114 -11.00239 -10.33810 -10.28271 -10.12152 -9.92432 -8.66919 -8.34635 -6.12897 0.04799 0.81125 1.18810 1.27009 1.43682 1.46622 1.50049 1.56644 1.61159 1.96552 2.26862 2.34280 2.99442 3.09278 3.31988 3.32186 3.64905 3.86817 3.92178 3.96269 4.05909 4.13530 4.23002 4.29329 4.43333 4.50795 4.55844 4.57864 4.62426 4.72157 4.79839 4.84236 4.89885 5.01449 5.09158 5.22245 5.31848 5.41342 5.43854 5.62337 6.01147 6.19374 6.49644 6.71578 7.06548 7.15108 7.24255 8.74269 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.001573 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.503024 B =17793.139378 C =18383.498842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.028 3.972 3 N -0.289 5.289 4 N -0.070 5.070 5 N -0.352 5.352 6 H 0.466 0.534 7 C -0.056 4.056 8 C 0.596 3.404 9 O -0.553 6.553 10 N -0.585 5.585 11 C 0.067 3.933 12 C 0.116 3.884 13 C -0.131 4.131 14 C 0.123 3.877 15 N -0.714 5.714 16 C 0.533 3.467 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 32.197 -0.042 32.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 N -0.155 5.155 4 N -0.050 5.050 5 N -0.079 5.079 6 H 0.315 0.685 7 C -0.193 4.193 8 C 0.379 3.621 9 O -0.430 6.430 10 N -0.316 5.316 11 C -0.074 4.074 12 C -0.006 4.006 13 C -0.169 4.169 14 C -0.002 4.002 15 N -0.368 5.368 16 C 0.318 3.682 17 O -0.444 6.444 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.419 32.107 -0.962 32.967 hybrid contribution 2.464 -1.142 0.308 2.733 sum -4.956 30.965 -0.653 31.366 Atomic orbital electron populations 1.20379 0.83315 1.04546 1.05248 1.22729 0.99537 0.86481 1.02497 1.74868 0.95671 1.26971 1.18030 1.78194 1.15873 0.92676 1.18243 1.45403 1.08891 1.06278 1.47349 0.68476 1.21763 0.86260 0.96118 1.15165 1.16931 0.78038 0.83316 0.83786 1.90909 1.55223 1.63478 1.33368 1.47739 1.63455 1.09697 1.10747 1.22187 1.03602 0.95492 0.86143 1.21540 0.97423 0.77291 1.04381 1.22002 0.99172 0.91982 1.03791 1.21269 0.87438 0.91033 1.00416 1.45725 1.15590 1.05063 1.70390 1.20050 0.88791 0.83030 0.76291 1.90697 1.33861 1.69497 1.50358 1.23380 0.99464 0.99306 1.06024 1.85579 1.19073 0.97534 1.90320 1.23180 0.97122 0.95535 1.53766 0.89880 1.26122 1.02288 0.96103 0.94602 1.70174 1.33461 1.03937 1.47124 0.85012 0.76816 0.76991 0.79225 1.18586 1.20418 1.18759 0.87415 0.89195 0.90196 0.89545 0.88255 0.91484 0.86384 0.90420 0.91640 0.88562 0.90995 0.92850 0.74721 0.87404 0.87012 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.28 71.23 0.73 0.20 16 2 C 0.03 0.37 6.96 42.04 0.29 0.67 16 3 N -0.29 -5.24 12.35 -47.88 -0.59 -5.83 16 4 N -0.07 -1.18 13.35 37.02 0.49 -0.69 16 5 N -0.35 -4.17 7.07 -48.52 -0.34 -4.51 16 6 H 0.47 2.64 8.96 -219.90 -1.97 0.67 16 7 C -0.06 -0.74 5.18 40.41 0.21 -0.53 16 8 C 0.60 8.45 7.30 86.61 0.63 9.08 16 9 O -0.55 -12.65 16.66 -4.10 -0.07 -12.72 16 10 N -0.59 -4.71 2.87 -850.89 -2.44 -7.16 16 11 C 0.07 0.14 10.27 127.77 1.31 1.45 16 12 C 0.12 1.01 5.47 86.38 0.47 1.48 16 13 C -0.13 -1.31 5.65 30.59 0.17 -1.13 16 14 C 0.12 2.22 5.67 86.38 0.49 2.71 16 15 N -0.71 -16.00 5.56 -463.06 -2.57 -18.57 16 16 C 0.53 18.75 7.85 87.66 0.69 19.44 16 17 O -0.57 -25.49 15.86 -3.04 -0.05 -25.54 16 18 C -0.13 -5.00 6.16 71.23 0.44 -4.56 16 19 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 20 C -0.55 -30.98 9.50 67.95 0.65 -30.33 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.60 13.22 21.65 0.29 -55.31 16 24 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 0.55 8.03 -2.39 -0.02 0.53 16 31 H 0.09 -0.07 8.14 -2.39 -0.02 -0.08 16 32 H 0.10 -0.10 8.11 -2.39 -0.02 -0.11 16 33 H 0.07 0.24 6.49 -2.38 -0.02 0.22 16 34 H 0.12 0.45 8.07 -2.39 -0.02 0.43 16 35 H 0.08 1.03 7.36 -2.38 -0.02 1.01 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.42 6.39 8.47 -92.70 -0.79 5.60 16 41 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 42 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -87.27 389.05 0.43 -86.83 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -1.70 Total: 8.18 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.55 Total: -0.28 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -5.17 Total: -92.07 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.12 Total: -38.26 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -87.27 0.43 -86.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743374708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.674 kcal (2) G-P(sol) polarization free energy of solvation -87.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds