Wall clock time and date at job start Wed Apr 1 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34599 * 125.79812 * 2 1 4 4 C 1.37854 * 107.41022 * 180.02562 * 3 2 1 5 5 C 1.47553 * 126.38191 * 180.02562 * 4 3 2 6 6 N 1.29151 * 125.87113 * 0.02562 * 5 4 3 7 7 O 1.41386 * 112.86213 * 179.65798 * 6 5 4 8 8 C 1.44203 * 107.60020 * 17.50034 * 7 6 5 9 9 H 1.09001 * 110.97205 * 216.43158 * 8 7 6 10 10 C 1.50699 * 110.97307 * 92.69792 * 8 7 6 11 11 O 1.21274 * 120.00143 * 356.45429 * 10 8 7 12 12 N 1.34778 * 120.00175 * 176.45292 * 10 8 7 13 13 C 1.39267 * 119.99900 * 174.82916 * 12 10 8 14 14 C 1.39670 * 119.57216 * 185.70265 * 13 12 10 15 15 C 1.38657 * 119.49707 * 179.97438 * 14 13 12 16 16 C 1.38347 * 118.66450 * 359.97438 * 15 14 13 17 17 C 1.40570 * 119.13540 * 0.02562 * 16 15 14 18 18 C 1.41336 * 119.78996 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00258 * 5.69288 * 18 17 16 20 20 C 1.40033 * 120.00086 * 185.69129 * 18 17 16 21 21 N 1.30747 * 119.99949 * 354.91751 * 20 18 17 22 22 Si 1.86789 * 120.00209 * 174.92226 * 20 18 17 23 23 H 1.48500 * 109.47262 * 94.99519 * 22 20 18 24 24 H 1.48503 * 109.47331 * 215.00047 * 22 20 18 25 25 H 1.48502 * 109.46911 * 334.99672 * 22 20 18 26 26 N 1.31902 * 119.57595 * 5.43337 * 13 12 10 27 27 C 1.51696 * 125.87305 * 179.71129 * 5 4 3 28 28 C 1.41186 * 107.24479 * 359.97438 * 4 3 2 29 29 N 1.30537 * 108.08726 * 0.26989 * 28 4 3 30 30 H 1.08994 * 109.47170 * 89.99539 * 1 2 3 31 31 H 1.09000 * 109.47127 * 209.99888 * 1 2 3 32 32 H 1.09003 * 109.46753 * 329.99744 * 1 2 3 33 33 H 1.08005 * 126.29259 * 359.97438 * 3 2 1 34 34 H 0.96999 * 119.99918 * 354.83506 * 12 10 8 35 35 H 1.07999 * 120.25307 * 359.95999 * 14 13 12 36 36 H 1.07996 * 120.66611 * 179.97438 * 15 14 13 37 37 H 1.08006 * 120.42863 * 179.97438 * 16 15 14 38 38 H 0.97003 * 120.00118 * 179.97438 * 21 20 18 39 39 H 1.08994 * 110.78907 * 282.89144 * 27 5 4 40 40 H 1.08996 * 110.78817 * 46.35773 * 27 5 4 41 41 H 1.07994 * 125.95782 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.0917 0.0000 4 6 3.5605 0.6569 -0.0006 5 6 4.7658 1.5080 -0.0003 6 7 4.7802 2.7995 0.0011 7 8 6.0891 3.3342 0.0088 8 6 6.9907 2.2859 -0.4006 9 1 7.9331 2.3472 0.1437 10 6 7.2267 2.3280 -1.8884 11 8 6.6321 3.1323 -2.5742 12 7 8.0985 1.4717 -2.4570 13 6 8.2373 1.4368 -3.8423 14 6 9.0526 0.4664 -4.4291 15 6 9.1893 0.4328 -5.8085 16 6 8.5077 1.3686 -6.5659 17 6 7.7024 2.3199 -5.9160 18 6 6.9995 3.2820 -6.6763 19 1 7.0078 3.2290 -7.7549 20 6 6.2923 4.3039 -6.0309 21 7 6.1992 4.3117 -4.7268 22 14 5.4820 5.6559 -7.0332 23 1 4.0588 5.3076 -7.2750 24 1 5.5581 6.9381 -6.2879 25 1 6.1849 5.7969 -8.3337 26 7 7.5928 2.3171 -4.5835 27 6 6.2010 1.0168 0.0053 28 6 3.5323 -0.7547 -0.0003 29 7 2.2836 -1.1352 -0.0055 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9202 2.1194 -0.0004 34 1 8.6292 0.8797 -1.9013 35 1 9.5730 -0.2521 -3.8132 36 1 9.8151 -0.3090 -6.2821 37 1 8.5939 1.3687 -7.6426 38 1 5.7096 5.0199 -4.2798 39 1 6.4907 0.6798 1.0005 40 1 6.3412 0.2236 -0.7291 41 1 4.3937 -1.4062 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438837310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:33 Heat of formation + Delta-G solvation = 134.755893 kcal Electronic energy + Delta-G solvation = -28976.169082 eV Core-core repulsion = 24861.559848 eV Total energy + Delta-G solvation = -4114.609234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42309 -40.24891 -38.71231 -37.12872 -34.23101 -33.97911 -33.04427 -32.76209 -30.98587 -30.28133 -29.79584 -28.84178 -27.19874 -25.62689 -24.43085 -22.60733 -21.96054 -21.26382 -20.97119 -19.77582 -19.28471 -17.91280 -17.25263 -16.86463 -16.22067 -15.78350 -15.76200 -15.08255 -14.78989 -14.65109 -14.51734 -14.42655 -13.97100 -13.56485 -13.41516 -13.21301 -13.13810 -12.90252 -12.83668 -12.67136 -12.27082 -12.00867 -11.90739 -11.55822 -11.12947 -11.04902 -10.93472 -10.65118 -10.61187 -10.46928 -10.21723 -9.92104 -9.76399 -9.67039 -9.01569 -8.89790 -8.29520 -7.96995 -7.20198 -6.98243 -6.13162 -4.38947 1.23322 1.85407 2.15134 2.73559 2.96625 3.05010 3.19526 3.22100 3.23796 3.28906 3.59413 3.77742 3.92830 4.08645 4.39243 4.55219 4.59937 4.69851 4.80708 4.86811 4.92380 5.01953 5.07430 5.25366 5.30538 5.41612 5.47640 5.72211 5.99594 6.03658 6.11158 6.27200 6.47459 6.60342 6.64987 6.82251 6.84724 7.25072 7.34427 7.51842 7.57898 7.62300 7.80813 8.03745 8.19595 8.44467 8.74572 9.04965 9.20266 10.24384 10.49878 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.003610 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.420881 B = 7754.414153 C = 8649.956744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 C 0.109 3.891 4 C -0.193 4.193 5 C 0.164 3.836 6 N -0.289 5.289 7 O -0.167 6.167 8 C 0.026 3.974 9 H 0.130 0.870 10 C 0.452 3.548 11 O -0.380 6.380 12 N -0.663 5.663 13 C 0.372 3.628 14 C -0.357 4.357 15 C -0.036 4.036 16 C -0.305 4.305 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.083 0.917 20 C 0.057 3.943 21 N -0.655 5.655 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.263 1.263 26 N -0.475 5.475 27 C -0.134 4.134 28 C 0.086 3.914 29 N -0.297 5.297 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.187 0.813 34 H 0.398 0.602 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.274 0.726 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 -8.407 13.868 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.147 5.147 3 C -0.043 4.043 4 C -0.206 4.206 5 C -0.026 4.026 6 N -0.031 5.031 7 O -0.185 6.185 8 C -0.037 4.037 9 H 0.147 0.853 10 C 0.231 3.769 11 O -0.240 6.240 12 N -0.313 5.313 13 C 0.134 3.866 14 C -0.383 4.383 15 C -0.061 4.061 16 C -0.328 4.328 17 C 0.146 3.854 18 C -0.455 4.455 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.273 5.273 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.187 1.187 26 N -0.194 5.194 27 C -0.174 4.174 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.203 0.797 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.386 -6.815 14.028 18.202 hybrid contribution 1.765 -0.422 -0.637 1.923 sum -7.621 -7.237 13.390 17.022 Atomic orbital electron populations 1.21976 0.73454 1.04814 1.04005 1.48369 1.07146 1.03757 1.55420 1.23063 0.90273 0.93755 0.97221 1.17953 0.89598 0.92090 1.20984 1.23183 0.93236 0.91562 0.94660 1.78424 1.00305 1.10146 1.14225 1.91293 1.10435 1.31193 1.85558 1.23703 0.96721 0.87840 0.95465 0.85291 1.20835 0.82924 0.83969 0.89129 1.91197 1.41673 1.30506 1.60668 1.43338 1.42007 1.40303 1.05619 1.18578 0.92650 0.92042 0.83376 1.20466 1.15152 1.07466 0.95166 1.20562 0.96222 0.96215 0.93071 1.21626 1.09071 1.03550 0.98549 1.18374 0.89303 0.90332 0.87407 1.19592 1.24739 1.07157 0.94015 0.89934 1.26176 0.96701 0.99119 0.95204 1.70281 1.23377 1.26344 1.07324 0.86506 0.79975 0.80756 0.80788 1.19774 1.20180 1.18670 1.68686 1.23233 1.21920 1.05548 1.22931 0.90050 0.99650 1.04745 1.24001 0.95324 0.93361 0.97591 1.77211 1.01659 1.07940 1.24884 0.90185 0.88922 0.89046 0.79651 0.76841 0.89057 0.88609 0.88567 0.91398 0.87189 0.87599 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.45 59.85 0.69 1.26 16 2 N -0.37 -3.84 3.99 -67.56 -0.27 -4.11 16 3 C 0.11 1.24 11.47 -16.48 -0.19 1.05 16 4 C -0.19 -2.47 6.12 -105.12 -0.64 -3.12 16 5 C 0.16 2.38 7.29 -79.43 -0.58 1.80 16 6 N -0.29 -5.11 12.49 35.29 0.44 -4.67 16 7 O -0.17 -3.11 11.82 -30.20 -0.36 -3.47 16 8 C 0.03 0.39 4.23 -26.88 -0.11 0.28 16 9 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 10 C 0.45 9.26 7.11 -10.98 -0.08 9.18 16 11 O -0.38 -10.02 12.43 -13.27 -0.16 -10.18 16 12 N -0.66 -12.73 5.38 -11.40 -0.06 -12.79 16 13 C 0.37 9.03 7.43 -154.98 -1.15 7.88 16 14 C -0.36 -7.92 9.96 -38.89 -0.39 -8.30 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.30 -7.74 9.83 -38.66 -0.38 -8.12 16 17 C 0.27 7.71 6.54 -85.00 -0.56 7.15 16 18 C -0.42 -11.90 9.13 -37.73 -0.34 -12.24 16 19 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 20 C 0.06 1.55 5.49 -17.34 -0.10 1.46 16 21 N -0.65 -18.82 9.08 55.55 0.50 -18.31 16 22 Si 0.90 19.83 29.56 -169.99 -5.03 14.81 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 26 N -0.47 -13.51 5.74 -10.26 -0.06 -13.57 16 27 C -0.13 -1.57 6.45 -26.39 -0.17 -1.74 16 28 C 0.09 0.97 11.87 -16.98 -0.20 0.77 16 29 N -0.30 -3.61 12.51 30.85 0.39 -3.22 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.40 5.57 8.70 -40.82 -0.36 5.22 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.27 7.52 8.29 -40.82 -0.34 7.18 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.16 7.92 -51.93 -0.41 0.75 16 41 H 0.19 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -38.89 362.61 -8.29 -47.18 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.54 Total: 6.81 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -4.60 Total: -3.93 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.94 Total: -56.68 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.52 Total: -13.65 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.89 -8.29 -47.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438837310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.931 kcal (2) G-P(sol) polarization free energy of solvation -38.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds