Wall clock time and date at job start Tue Mar 31 2020 23:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48503 * 109.46608 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46824 * 299.99698 * 3 2 1 6 6 H 1.48499 * 109.47334 * 60.00268 * 3 2 1 7 7 C 1.38807 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00072 * 197.59111 * 7 2 1 9 9 N 1.36939 * 119.99944 * 17.59170 * 7 2 1 10 10 C 1.46963 * 120.59333 * 208.20540 * 9 7 2 11 11 C 1.53379 * 108.63159 * 235.24563 * 10 9 7 12 12 N 1.46966 * 108.63381 * 310.57536 * 11 10 9 13 13 C 1.34778 * 120.59073 * 235.20196 * 12 11 10 14 14 O 1.21278 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99673 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.46796 * 180.02562 * 15 13 12 17 17 C 1.36330 * 120.05799 * 99.98244 * 16 15 13 18 18 C 1.40901 * 118.25852 * 180.02562 * 17 16 15 19 19 C 1.40379 * 121.28840 * 179.97438 * 18 17 16 20 20 C 1.36183 * 119.63369 * 180.02562 * 19 18 17 21 21 C 1.39307 * 120.85800 * 359.97438 * 20 19 18 22 22 C 1.36116 * 121.04211 * 0.26489 * 21 20 19 23 23 C 1.40556 * 119.76013 * 359.48183 * 22 21 20 24 24 N 1.33761 * 121.01005 * 180.23133 * 23 22 21 25 25 C 1.31559 * 121.25965 * 180.28052 * 24 23 22 26 26 O 1.35575 * 119.20128 * 180.02562 * 25 24 23 27 27 C 1.46963 * 118.81109 * 55.47929 * 12 11 10 28 28 C 1.46966 * 120.59256 * 28.22218 * 9 7 2 29 29 H 0.97004 * 119.99692 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.61291 * 115.50107 * 10 9 7 31 31 H 1.08995 * 109.75637 * 355.07234 * 10 9 7 32 32 H 1.09001 * 109.60638 * 190.83427 * 11 10 9 33 33 H 1.08994 * 109.75093 * 70.40430 * 11 10 9 34 34 H 1.09000 * 109.46812 * 60.00286 * 15 13 12 35 35 H 1.09002 * 109.47321 * 300.00075 * 15 13 12 36 36 H 1.08001 * 120.86625 * 0.04052 * 17 16 15 37 37 H 1.07997 * 120.18250 * 0.06080 * 19 18 17 38 38 H 1.08003 * 119.57099 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.47906 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.12752 * 179.73568 * 22 21 20 41 41 H 0.96700 * 114.00107 * 90.00113 * 26 25 24 42 42 H 1.08993 * 109.61296 * 64.26456 * 27 12 11 43 43 H 1.08998 * 109.60744 * 184.78020 * 27 12 11 44 44 H 1.08999 * 109.60863 * 244.49610 * 28 9 7 45 45 H 1.08998 * 109.61359 * 4.83651 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0524 -1.2240 0.2821 9 7 1.3737 -2.3601 -0.3595 10 6 1.8124 -3.6538 0.1826 11 6 2.1178 -4.5972 -0.9875 12 7 0.9838 -4.5686 -1.9220 13 6 0.3578 -5.7085 -2.2760 14 8 0.7289 -6.7702 -1.8221 15 6 -0.8040 -5.6636 -3.2348 16 6 -1.3212 -7.0606 -3.4629 17 6 -2.4305 -7.4947 -2.7999 18 6 -2.8808 -8.8078 -3.0414 19 6 -4.0156 -9.3202 -2.3931 20 6 -4.4207 -10.5945 -2.6513 21 6 -3.7238 -11.3973 -3.5515 22 6 -2.6167 -10.9339 -4.1938 23 6 -2.1709 -9.6221 -3.9575 24 7 -1.0888 -9.1396 -4.5784 25 6 -0.6640 -7.9144 -4.3568 26 8 0.4373 -7.4679 -5.0095 27 6 0.5487 -3.2756 -2.4683 28 6 0.2397 -2.3316 -1.2940 29 1 -0.4850 0.8401 0.0004 30 1 1.0206 -4.0797 0.7989 31 1 2.7103 -3.5155 0.7848 32 1 2.2576 -5.6112 -0.6129 33 1 3.0221 -4.2684 -1.4995 34 1 -0.4761 -5.2379 -4.1832 35 1 -1.5982 -5.0466 -2.8147 36 1 -2.9507 -6.8489 -2.1080 37 1 -4.5647 -8.7070 -1.6938 38 1 -5.2937 -10.9878 -2.1516 39 1 -4.0650 -12.4044 -3.7399 40 1 -2.0852 -11.5705 -4.8856 41 1 0.2469 -7.0426 -5.8568 42 1 1.3432 -2.8519 -3.0825 43 1 -0.3479 -3.4166 -3.0719 44 1 -0.6640 -2.6634 -0.7828 45 1 0.0979 -1.3170 -1.6662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524812674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:25 Heat of formation + Delta-G solvation = 14.818960 kcal Electronic energy + Delta-G solvation = -29178.798359 eV Core-core repulsion = 25162.528613 eV Total energy + Delta-G solvation = -4016.269746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23836 -39.61268 -38.44156 -36.81475 -36.00698 -34.21193 -33.87946 -32.03971 -31.20844 -30.17747 -29.87802 -28.08200 -26.61118 -24.16615 -23.78059 -23.19241 -22.57244 -22.26563 -20.54485 -19.23548 -18.62746 -18.15439 -17.25441 -17.11354 -16.27815 -16.04089 -15.55419 -15.17371 -14.89667 -14.85431 -14.62179 -14.35611 -13.91298 -13.72362 -13.50648 -13.46966 -13.34423 -13.20889 -13.03708 -12.72416 -12.14265 -11.96830 -11.71277 -11.65159 -11.57921 -11.42404 -11.37952 -10.89100 -10.78008 -10.67251 -10.50787 -10.27696 -10.06911 -9.87479 -9.61399 -9.42918 -8.71352 -8.64181 -8.42745 -8.25110 -6.75711 -5.90579 -3.34402 0.19065 0.57426 1.79367 2.59140 2.99102 3.30220 3.38886 3.40561 3.41814 3.46083 3.88530 4.23899 4.40722 4.42098 4.53807 4.63738 4.76689 4.89012 4.93266 5.00498 5.14946 5.22646 5.24220 5.31215 5.40901 5.58658 5.70724 5.77542 5.79258 5.83000 5.85145 5.92826 6.08523 6.12912 6.19491 6.20319 6.26062 6.30852 6.41428 6.57997 6.75622 6.90485 7.16045 7.34479 7.40164 7.68837 7.73816 7.90203 8.31227 8.56671 9.07615 9.70061 10.27004 11.17259 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.002365 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.715142 B =11838.276473 C =12242.322023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.097 3.903 12 N -0.597 5.597 13 C 0.516 3.484 14 O -0.549 6.549 15 C -0.093 4.093 16 C -0.122 4.122 17 C -0.036 4.036 18 C -0.109 4.109 19 C -0.088 4.088 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.097 4.097 23 C 0.148 3.852 24 N -0.499 5.499 25 C 0.367 3.633 26 O -0.474 6.474 27 C 0.079 3.921 28 C 0.157 3.843 29 H 0.255 0.745 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.399 0.601 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.023 0.977 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -16.052 -10.328 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.027 4.027 12 N -0.330 5.330 13 C 0.303 3.697 14 O -0.427 6.427 15 C -0.134 4.134 16 C -0.126 4.126 17 C -0.061 4.061 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.119 4.119 22 C -0.116 4.116 23 C 0.027 3.973 24 N -0.218 5.218 25 C 0.173 3.827 26 O -0.280 6.280 27 C -0.045 4.045 28 C 0.030 3.970 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.041 0.959 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.534 -17.234 -10.173 21.756 hybrid contribution -0.150 1.757 0.181 1.773 sum -8.684 -15.476 -9.992 20.366 Atomic orbital electron populations 1.70024 1.05298 1.25603 1.53801 1.25064 0.95314 0.98553 1.00681 0.86206 0.79435 0.83702 0.77333 1.20187 1.21461 1.21677 1.19253 0.92903 0.84676 1.41444 0.91413 1.43993 1.36699 1.01578 1.49141 1.21297 0.98411 0.86989 0.92806 1.22183 0.87704 1.01014 0.91790 1.48028 1.33019 1.06642 1.45272 1.20195 0.83695 0.83744 0.82025 1.90674 1.66502 1.29523 1.56046 1.20547 0.98166 0.93620 1.01053 1.20159 0.95958 0.96822 0.99664 1.21311 0.94730 0.94219 0.95887 1.18816 0.97961 0.95019 0.99328 1.21000 0.94949 0.96113 0.98584 1.20901 1.00422 0.94264 0.98682 1.20889 0.94941 1.00054 0.96060 1.20780 0.96853 0.93429 1.00532 1.18534 0.90625 0.94523 0.93613 1.67510 1.13057 1.14204 1.27016 1.19080 0.84965 0.87619 0.91036 1.84839 1.27427 1.77942 1.37808 1.22783 0.99054 0.83983 0.98709 1.21265 0.89263 0.98658 0.87794 0.93543 0.95923 0.91542 0.90087 0.91983 0.87780 0.87561 0.83726 0.85075 0.85508 0.85325 0.84778 0.74352 0.91674 0.91105 0.95870 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 11.20 55.49 0.62 -24.20 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.12 2.97 -171.76 -0.51 -14.63 16 10 C 0.13 2.75 6.67 -3.59 -0.02 2.73 16 11 C 0.10 1.81 6.59 -3.59 -0.02 1.78 16 12 N -0.60 -10.58 2.94 -172.21 -0.51 -11.08 16 13 C 0.52 8.87 7.69 -10.98 -0.08 8.78 16 14 O -0.55 -11.42 15.37 5.56 0.09 -11.33 16 15 C -0.09 -1.17 3.82 -29.03 -0.11 -1.28 16 16 C -0.12 -1.62 4.41 -104.65 -0.46 -2.08 16 17 C -0.04 -0.43 9.49 -39.26 -0.37 -0.81 16 18 C -0.11 -1.33 5.74 -106.79 -0.61 -1.94 16 19 C -0.09 -0.83 9.77 -39.52 -0.39 -1.22 16 20 C -0.12 -1.01 9.96 -39.92 -0.40 -1.41 16 21 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 22 C -0.10 -1.04 9.98 -39.47 -0.39 -1.43 16 23 C 0.15 1.98 6.60 -84.85 -0.56 1.42 16 24 N -0.50 -7.41 10.37 -11.05 -0.11 -7.53 16 25 C 0.37 5.22 7.60 -17.01 -0.13 5.09 16 26 O -0.47 -6.10 12.75 -18.42 -0.23 -6.33 16 27 C 0.08 1.33 6.54 -3.37 -0.02 1.31 16 28 C 0.16 3.41 5.54 -3.37 -0.02 3.39 16 29 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 32 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.05 7.60 -51.93 -0.39 0.65 16 35 H 0.11 1.14 7.59 -51.93 -0.39 0.74 16 36 H 0.15 1.39 8.04 -52.49 -0.42 0.97 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.40 2.76 9.06 45.56 0.41 3.17 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 0.94 5.91 -51.93 -0.31 0.63 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 2.41 5.98 -51.93 -0.31 2.10 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -34.90 371.44 -9.44 -44.34 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.12 Total: 3.13 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -4.22 Total: 6.32 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.51 Total: -57.44 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.15 Total: -17.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.90 -9.44 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524812674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.158 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds