Wall clock time and date at job start Tue Mar 31 2020 23:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48503 * 109.46608 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46824 * 299.99698 * 3 2 1 6 6 H 1.48499 * 109.47334 * 60.00268 * 3 2 1 7 7 C 1.38807 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00072 * 197.59111 * 7 2 1 9 9 N 1.36939 * 119.99944 * 17.59170 * 7 2 1 10 10 C 1.46963 * 120.59333 * 208.20540 * 9 7 2 11 11 C 1.53379 * 108.63159 * 235.24563 * 10 9 7 12 12 N 1.46966 * 108.63381 * 310.57536 * 11 10 9 13 13 C 1.34778 * 120.59073 * 235.20196 * 12 11 10 14 14 O 1.21278 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99673 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.46796 * 180.02562 * 15 13 12 17 17 C 1.36330 * 120.05799 * 99.98244 * 16 15 13 18 18 C 1.40901 * 118.25852 * 180.02562 * 17 16 15 19 19 C 1.40379 * 121.28840 * 179.97438 * 18 17 16 20 20 C 1.36183 * 119.63369 * 180.02562 * 19 18 17 21 21 C 1.39307 * 120.85800 * 359.97438 * 20 19 18 22 22 C 1.36116 * 121.04211 * 0.26489 * 21 20 19 23 23 C 1.40556 * 119.76013 * 359.48183 * 22 21 20 24 24 N 1.33761 * 121.01005 * 180.23133 * 23 22 21 25 25 C 1.31559 * 121.25965 * 180.28052 * 24 23 22 26 26 O 1.35575 * 119.20128 * 180.02562 * 25 24 23 27 27 C 1.46963 * 118.81109 * 55.47929 * 12 11 10 28 28 C 1.46966 * 120.59256 * 28.22218 * 9 7 2 29 29 H 0.97004 * 119.99692 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.61291 * 115.50107 * 10 9 7 31 31 H 1.08995 * 109.75637 * 355.07234 * 10 9 7 32 32 H 1.09001 * 109.60638 * 190.83427 * 11 10 9 33 33 H 1.08994 * 109.75093 * 70.40430 * 11 10 9 34 34 H 1.09000 * 109.46812 * 60.00286 * 15 13 12 35 35 H 1.09002 * 109.47321 * 300.00075 * 15 13 12 36 36 H 1.08001 * 120.86625 * 0.04052 * 17 16 15 37 37 H 1.07997 * 120.18250 * 0.06080 * 19 18 17 38 38 H 1.08003 * 119.57099 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.47906 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.12752 * 179.73568 * 22 21 20 41 41 H 0.96700 * 114.00107 * 90.00113 * 26 25 24 42 42 H 1.08993 * 109.61296 * 64.26456 * 27 12 11 43 43 H 1.08998 * 109.60744 * 184.78020 * 27 12 11 44 44 H 1.08999 * 109.60863 * 244.49610 * 28 9 7 45 45 H 1.08998 * 109.61359 * 4.83651 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0524 -1.2240 0.2821 9 7 1.3737 -2.3601 -0.3595 10 6 1.8124 -3.6538 0.1826 11 6 2.1178 -4.5972 -0.9875 12 7 0.9838 -4.5686 -1.9220 13 6 0.3578 -5.7085 -2.2760 14 8 0.7289 -6.7702 -1.8221 15 6 -0.8040 -5.6636 -3.2348 16 6 -1.3212 -7.0606 -3.4629 17 6 -2.4305 -7.4947 -2.7999 18 6 -2.8808 -8.8078 -3.0414 19 6 -4.0156 -9.3202 -2.3931 20 6 -4.4207 -10.5945 -2.6513 21 6 -3.7238 -11.3973 -3.5515 22 6 -2.6167 -10.9339 -4.1938 23 6 -2.1709 -9.6221 -3.9575 24 7 -1.0888 -9.1396 -4.5784 25 6 -0.6640 -7.9144 -4.3568 26 8 0.4373 -7.4679 -5.0095 27 6 0.5487 -3.2756 -2.4683 28 6 0.2397 -2.3316 -1.2940 29 1 -0.4850 0.8401 0.0004 30 1 1.0206 -4.0797 0.7989 31 1 2.7103 -3.5155 0.7848 32 1 2.2576 -5.6112 -0.6129 33 1 3.0221 -4.2684 -1.4995 34 1 -0.4761 -5.2379 -4.1832 35 1 -1.5982 -5.0466 -2.8147 36 1 -2.9507 -6.8489 -2.1080 37 1 -4.5647 -8.7070 -1.6938 38 1 -5.2937 -10.9878 -2.1516 39 1 -4.0650 -12.4044 -3.7399 40 1 -2.0852 -11.5705 -4.8856 41 1 0.2469 -7.0426 -5.8568 42 1 1.3432 -2.8519 -3.0825 43 1 -0.3479 -3.4166 -3.0719 44 1 -0.6640 -2.6634 -0.7828 45 1 0.0979 -1.3170 -1.6662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524812674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:24 Heat of formation + Delta-G solvation = -10.283915 kcal Electronic energy + Delta-G solvation = -29179.886901 eV Core-core repulsion = 25162.528613 eV Total energy + Delta-G solvation = -4017.358288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12973 -40.93109 -39.34157 -38.38841 -36.85776 -35.58516 -35.14703 -33.40600 -32.55086 -31.74617 -30.66529 -29.30298 -28.10074 -25.50667 -24.97959 -24.53631 -23.78771 -23.08610 -22.07647 -20.24062 -20.00427 -19.02333 -18.74863 -18.08623 -17.62065 -17.21513 -16.84410 -16.53325 -16.36599 -15.89741 -15.57353 -15.45162 -15.23488 -15.17331 -14.96672 -14.73224 -14.55179 -14.29644 -14.16960 -13.95090 -13.32031 -13.17135 -13.03389 -12.95696 -12.69480 -12.50587 -12.44128 -12.34942 -12.25025 -12.20321 -12.01632 -11.87111 -11.64954 -11.55689 -10.81459 -10.58070 -10.52657 -9.80416 -9.56679 -9.21311 -8.64459 -7.88459 -5.35823 -0.61426 -0.26490 0.97592 1.47993 1.51562 1.61064 1.67818 1.77428 2.15750 2.52129 2.58395 3.03814 3.26100 3.36731 3.60636 3.62597 3.65967 3.74186 3.88664 4.03923 4.20873 4.24935 4.28881 4.32297 4.39249 4.41491 4.42999 4.57502 4.60128 4.69151 4.76042 4.80013 4.82596 4.99300 5.01435 5.07764 5.08631 5.25023 5.40512 5.47376 5.50607 5.56814 5.62269 5.68551 5.89973 6.36699 6.52549 6.58615 6.86596 7.12312 7.21738 7.79365 8.32715 9.16672 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.002365 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.715142 B =11838.276473 C =12242.322023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.295 1.295 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.134 3.866 11 C 0.107 3.893 12 N -0.602 5.602 13 C 0.514 3.486 14 O -0.588 6.588 15 C -0.084 4.084 16 C -0.141 4.141 17 C -0.036 4.036 18 C -0.129 4.129 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.085 4.085 22 C -0.122 4.122 23 C 0.121 3.879 24 N -0.529 5.529 25 C 0.352 3.648 26 O -0.490 6.490 27 C 0.095 3.905 28 C 0.161 3.839 29 H 0.252 0.748 30 H 0.009 0.991 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.167 0.833 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.137 0.863 41 H 0.419 0.581 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.004 0.996 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 -16.700 -10.998 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.332 5.332 10 C 0.008 3.992 11 C -0.018 4.018 12 N -0.334 5.334 13 C 0.304 3.696 14 O -0.469 6.469 15 C -0.124 4.124 16 C -0.145 4.145 17 C -0.061 4.061 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.105 4.105 22 C -0.141 4.141 23 C 0.000 4.000 24 N -0.249 5.249 25 C 0.158 3.842 26 O -0.300 6.300 27 C -0.029 4.029 28 C 0.034 3.966 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.185 0.815 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.155 0.845 41 H 0.280 0.720 42 H 0.088 0.912 43 H 0.132 0.868 44 H 0.022 0.978 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.994 -17.888 -10.876 23.198 hybrid contribution 0.228 1.808 0.450 1.877 sum -9.766 -16.080 -10.426 21.509 Atomic orbital electron populations 1.70153 1.06470 1.26021 1.54984 1.25739 0.96042 1.01266 1.00929 0.85234 0.78541 0.79926 0.76842 1.19473 1.21175 1.22258 1.19510 0.93042 0.85788 1.41047 0.91665 1.44265 1.37057 1.01876 1.50049 1.21318 0.97924 0.86326 0.93671 1.21941 0.88539 0.99996 0.91301 1.48113 1.32834 1.07273 1.45192 1.20985 0.84094 0.82634 0.81860 1.90656 1.67767 1.30892 1.57611 1.20575 0.96654 0.94094 1.01072 1.20200 0.96761 0.97105 1.00418 1.21670 0.94403 0.94575 0.95430 1.19092 0.99035 0.95192 0.99744 1.21345 0.94204 0.97127 0.98641 1.21364 1.00931 0.93598 0.97851 1.21326 0.93360 1.01385 0.94406 1.20989 0.98307 0.92893 1.01903 1.18998 0.90790 0.95829 0.94378 1.67490 1.14285 1.14831 1.28321 1.19298 0.85288 0.87884 0.91686 1.84778 1.27666 1.78240 1.39269 1.22619 1.01125 0.82388 0.96759 1.21156 0.88011 0.98571 0.88831 0.93830 0.97326 0.91265 0.90334 0.91438 0.84971 0.85230 0.81532 0.82744 0.82074 0.82041 0.84514 0.71977 0.91200 0.86775 0.97812 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.68 11.20 21.65 0.24 -51.44 16 2 C -0.04 -2.32 4.90 84.86 0.42 -1.90 16 3 Si 0.97 42.75 29.59 68.60 2.03 44.78 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.26 -13.86 9.58 84.03 0.80 -13.06 16 8 H 0.07 3.38 7.89 -2.91 -0.02 3.36 16 9 N -0.61 -29.23 2.97 -697.34 -2.07 -31.30 16 10 C 0.13 5.63 6.67 86.42 0.58 6.21 16 11 C 0.11 3.94 6.59 86.42 0.57 4.50 16 12 N -0.60 -20.59 2.94 -817.15 -2.40 -22.99 16 13 C 0.51 17.05 7.69 87.66 0.67 17.73 16 14 O -0.59 -24.41 15.37 -3.02 -0.05 -24.46 16 15 C -0.08 -1.92 3.82 29.10 0.11 -1.81 16 16 C -0.14 -3.60 4.41 -19.88 -0.09 -3.69 16 17 C -0.04 -0.81 9.49 22.48 0.21 -0.60 16 18 C -0.13 -3.00 5.74 -21.27 -0.12 -3.12 16 19 C -0.09 -1.56 9.77 22.31 0.22 -1.34 16 20 C -0.12 -1.54 9.96 22.05 0.22 -1.32 16 21 C -0.09 -1.20 9.94 22.03 0.22 -0.98 16 22 C -0.12 -2.53 9.98 22.34 0.22 -2.31 16 23 C 0.12 3.22 6.60 40.26 0.27 3.49 16 24 N -0.53 -16.10 10.37 -302.14 -3.13 -19.23 16 25 C 0.35 10.05 7.60 85.16 0.65 10.69 16 26 O -0.49 -12.54 12.75 -88.83 -1.13 -13.68 16 27 C 0.09 3.01 6.54 86.56 0.57 3.58 16 28 C 0.16 6.95 5.54 86.56 0.48 7.42 16 29 H 0.25 13.53 8.31 -92.71 -0.77 12.75 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 2.80 7.94 -2.39 -0.02 2.78 16 32 H 0.08 2.94 6.99 -2.39 -0.02 2.93 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.13 2.24 7.60 -2.39 -0.02 2.22 16 35 H 0.13 2.35 7.59 -2.39 -0.02 2.33 16 36 H 0.17 2.85 8.04 -2.91 -0.02 2.82 16 37 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.42 5.62 9.06 -74.06 -0.67 4.95 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.11 2.64 5.91 -2.39 -0.01 2.63 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.08 3.70 5.98 -2.39 -0.01 3.69 16 Total: -1.00 -77.83 371.44 -0.16 -77.99 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.36 Total: 16.82 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 5.99 Total: 23.50 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -7.36 Total: -124.95 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.18 Total: -38.14 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.83 -0.16 -77.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524812674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.708 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds