Wall clock time and date at job start Tue Mar 31 2020 23:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48505 * 109.46826 * 274.99410 * 3 2 1 5 5 H 1.48494 * 109.47244 * 34.99802 * 3 2 1 6 6 H 1.48503 * 109.46982 * 155.00052 * 3 2 1 7 7 C 1.37878 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00138 * 185.73271 * 7 2 1 9 9 C 1.50698 * 119.99907 * 5.74268 * 7 2 1 10 10 H 1.09001 * 109.49628 * 306.35500 * 9 7 2 11 11 C 1.53046 * 109.52374 * 186.27616 * 9 7 2 12 12 C 1.53040 * 109.53604 * 178.66547 * 11 9 7 13 13 C 1.52758 * 109.38452 * 61.24007 * 12 11 9 14 14 N 1.46925 * 109.00942 * 305.58416 * 13 12 11 15 15 C 1.34775 * 120.63158 * 233.58290 * 14 13 12 16 16 O 1.21359 * 119.99722 * 171.06494 * 15 14 13 17 17 C 1.49335 * 120.00107 * 351.07310 * 15 14 13 18 18 O 1.21381 * 120.00022 * 353.44315 * 17 15 14 19 19 N 1.34781 * 119.99847 * 173.44811 * 17 15 14 20 20 C 1.39904 * 119.99714 * 183.30229 * 19 17 15 21 21 C 1.39462 * 119.88985 * 324.07898 * 20 19 17 22 22 C 1.37614 * 120.60571 * 179.97438 * 21 20 19 23 23 C 1.39154 * 120.02071 * 0.05058 * 22 21 20 24 24 N 1.37848 * 133.32877 * 179.97438 * 23 22 21 25 25 H 0.97010 * 125.06177 * 359.97364 * 24 23 22 26 26 C 1.36807 * 109.86868 * 179.97438 * 24 23 22 27 27 C 1.34235 * 109.94030 * 359.97438 * 26 24 23 28 28 C 1.40653 * 119.55578 * 359.96635 * 23 22 21 29 29 C 1.38271 * 119.88802 * 144.10100 * 20 19 17 30 30 C 1.46924 * 118.73789 * 53.31268 * 14 13 12 31 31 H 0.97001 * 119.99488 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.45397 * 298.68368 * 11 9 7 33 33 H 1.08996 * 109.45941 * 58.65935 * 11 9 7 34 34 H 1.09004 * 109.49215 * 181.31348 * 12 11 9 35 35 H 1.09000 * 109.49842 * 301.41273 * 12 11 9 36 36 H 1.09003 * 109.50991 * 185.70134 * 13 12 11 37 37 H 1.08999 * 109.43353 * 65.42126 * 13 12 11 38 38 H 0.96996 * 119.99801 * 3.29513 * 19 17 15 39 39 H 1.08007 * 119.70141 * 0.02653 * 21 20 19 40 40 H 1.08000 * 119.99165 * 180.02562 * 22 21 20 41 41 H 1.07993 * 125.02678 * 179.97438 * 26 24 23 42 42 H 1.07997 * 126.49527 * 179.73896 * 27 26 24 43 43 H 1.07997 * 120.20711 * 359.95705 * 29 20 19 44 44 H 1.09002 * 109.58845 * 66.42608 * 30 14 13 45 45 H 1.08999 * 109.59048 * 186.85944 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5036 2.6198 0.8030 6 1 3.5957 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0804 -1.1965 0.0940 9 6 1.2566 -2.4959 -0.1295 10 1 0.4782 -2.5459 0.6319 11 6 2.2277 -3.6643 0.0554 12 6 1.4627 -4.9861 -0.0435 13 6 0.8254 -5.1008 -1.4271 14 7 0.0044 -3.9081 -1.6762 15 6 -1.2888 -4.0275 -2.0363 16 8 -1.9993 -3.0447 -2.0815 17 6 -1.8475 -5.3693 -2.3793 18 8 -1.1126 -6.3327 -2.4500 19 7 -3.1678 -5.5104 -2.6106 20 6 -3.7020 -6.7784 -2.8638 21 6 -2.9638 -7.7106 -3.5925 22 6 -3.4746 -8.9622 -3.8497 23 6 -4.7391 -9.3076 -3.3826 24 7 -5.5022 -10.4517 -3.4764 25 1 -5.2336 -11.2649 -3.9321 26 6 -6.6948 -10.2694 -2.8312 27 6 -6.7483 -9.0342 -2.3084 28 6 -5.4871 -8.3702 -2.6476 29 6 -4.9603 -7.1029 -2.3913 30 6 0.6185 -2.5825 -1.5195 31 1 -0.4849 0.8401 0.0004 32 1 2.9916 -3.6278 -0.7214 33 1 2.7013 -3.5915 1.0343 34 1 2.1508 -5.8171 0.1114 35 1 0.6823 -5.0126 0.7170 36 1 0.1977 -5.9911 -1.4661 37 1 1.6083 -5.1698 -2.1824 38 1 -3.7476 -4.7328 -2.6013 39 1 -1.9817 -7.4482 -3.9576 40 1 -2.8942 -9.6766 -4.4147 41 1 -7.4772 -11.0097 -2.7540 42 1 -7.5680 -8.6086 -1.7488 43 1 -5.5316 -6.3810 -1.8268 44 1 1.3842 -2.4420 -2.2825 45 1 -0.1457 -1.8117 -1.6194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595083190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:23 Heat of formation + Delta-G solvation = 7.245070 kcal Electronic energy + Delta-G solvation = -28963.259327 eV Core-core repulsion = 24946.661153 eV Total energy + Delta-G solvation = -4016.598175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47986 -40.67385 -38.76905 -37.06851 -36.83332 -34.27050 -33.21311 -32.07135 -31.75403 -29.87135 -29.00084 -28.81189 -25.94870 -25.00812 -23.49473 -23.00889 -21.86177 -21.48914 -20.83860 -20.02876 -18.99949 -18.16740 -17.57141 -17.17109 -16.42784 -16.10957 -15.88364 -15.40888 -15.02652 -14.67185 -14.52076 -14.28816 -14.01232 -13.91854 -13.53750 -13.46636 -13.28291 -13.03602 -12.84568 -12.73505 -12.60493 -12.18734 -12.04936 -11.84003 -11.40880 -11.13645 -10.97002 -10.73321 -10.49509 -10.36629 -10.22735 -10.06737 -9.90672 -9.80554 -9.27946 -9.07237 -8.64724 -8.45353 -8.13144 -7.89564 -7.72496 -6.03123 -4.09329 0.90194 1.23848 1.86220 2.50751 2.59824 2.91339 3.30527 3.38263 3.40619 3.50147 3.76909 3.87913 4.42328 4.52279 4.57404 4.65302 4.94054 5.09826 5.23980 5.28520 5.32758 5.35370 5.60016 5.64890 5.71235 5.84897 5.90589 5.97259 6.14502 6.20981 6.26149 6.35881 6.44965 6.53419 6.54396 6.58646 6.68899 6.81971 6.94527 6.96243 6.99871 7.10307 7.19412 7.27566 7.55205 7.81071 7.87194 7.93552 8.05856 8.33010 8.50389 8.95744 9.55751 11.04335 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002277 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.710424 B =12294.950291 C =12915.701734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.037 0.963 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.072 3.928 14 N -0.567 5.567 15 C 0.496 3.504 16 O -0.519 6.519 17 C 0.511 3.489 18 O -0.501 6.501 19 N -0.646 5.646 20 C 0.122 3.878 21 C -0.091 4.091 22 C -0.115 4.115 23 C 0.084 3.916 24 N -0.598 5.598 25 H 0.414 0.586 26 C 0.050 3.950 27 C -0.205 4.205 28 C -0.093 4.093 29 C -0.095 4.095 30 C 0.113 3.887 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.423 0.577 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.169 0.831 42 H 0.146 0.854 43 H 0.129 0.871 44 H 0.052 0.948 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 -21.167 -7.545 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.055 0.945 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.050 4.050 14 N -0.299 5.299 15 C 0.277 3.723 16 O -0.396 6.396 17 C 0.296 3.704 18 O -0.377 6.377 19 N -0.293 5.293 20 C 0.028 3.972 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.023 4.023 24 N -0.202 5.202 25 H 0.251 0.749 26 C -0.077 4.077 27 C -0.230 4.230 28 C -0.098 4.098 29 C -0.116 4.116 30 C -0.007 4.007 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.261 0.739 39 H 0.161 0.839 40 H 0.142 0.858 41 H 0.186 0.814 42 H 0.164 0.836 43 H 0.147 0.853 44 H 0.070 0.930 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.311 -21.240 -7.644 25.249 hybrid contribution 0.316 0.924 -0.147 0.987 sum -10.995 -20.316 -7.791 24.379 Atomic orbital electron populations 1.69967 1.05802 1.26871 1.48982 1.25064 0.94858 0.99289 0.94773 0.86599 0.79936 0.83584 0.78032 1.20643 1.21229 1.19865 1.21062 0.93413 0.90164 1.51268 0.92270 1.18980 0.94181 0.92494 0.92333 0.94479 1.21658 0.98525 0.94195 1.00614 1.21895 0.99700 0.98936 0.96720 1.22599 0.96116 0.89430 0.96807 1.48407 1.08657 1.10216 1.62602 1.19638 0.83795 0.87971 0.80889 1.90790 1.57680 1.38577 1.52545 1.20875 0.82299 0.90370 0.76904 1.90482 1.57013 1.41169 1.49039 1.43218 1.08822 1.08816 1.68413 1.17431 0.94004 0.86099 0.99712 1.20943 1.00565 0.92380 0.97328 1.19875 0.92889 0.97248 1.03580 1.18307 0.94103 0.87454 1.02417 1.41799 1.15104 1.13739 1.49537 0.74918 1.21794 0.89021 0.98652 0.98185 1.21679 0.98114 0.94570 1.08681 1.18897 0.95331 0.93525 1.02030 1.20243 0.95166 0.95591 1.00649 1.22435 0.97875 0.80591 0.99824 0.92699 0.93227 0.92912 0.92012 0.92362 0.85755 0.92027 0.73938 0.83905 0.85842 0.81367 0.83604 0.85282 0.92976 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 12.09 55.43 0.67 -24.77 16 2 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.01 8.48 -34.44 -0.29 -14.30 16 8 H 0.06 1.56 7.76 -52.49 -0.41 1.16 16 9 C 0.04 0.97 2.11 -91.65 -0.19 0.77 16 10 H 0.04 1.03 8.10 -51.93 -0.42 0.61 16 11 C -0.11 -2.28 5.11 -26.69 -0.14 -2.42 16 12 C -0.13 -2.33 6.06 -26.83 -0.16 -2.50 16 13 C 0.07 1.26 5.95 -3.93 -0.02 1.24 16 14 N -0.57 -11.55 2.98 -173.58 -0.52 -12.07 16 15 C 0.50 9.82 7.73 -11.64 -0.09 9.73 16 16 O -0.52 -11.65 15.92 5.49 0.09 -11.56 16 17 C 0.51 8.37 7.56 -11.64 -0.09 8.29 16 18 O -0.50 -8.28 10.69 5.47 0.06 -8.22 16 19 N -0.65 -8.92 5.32 -10.28 -0.05 -8.98 16 20 C 0.12 1.58 6.27 -83.71 -0.52 1.05 16 21 C -0.09 -1.14 8.65 -39.35 -0.34 -1.48 16 22 C -0.11 -1.21 10.06 -39.47 -0.40 -1.61 16 23 C 0.08 0.88 7.27 -83.91 -0.61 0.27 16 24 N -0.60 -4.38 6.08 -10.62 -0.06 -4.44 16 25 H 0.41 1.75 8.96 -40.82 -0.37 1.38 16 26 C 0.05 0.34 11.81 -16.74 -0.20 0.14 16 27 C -0.20 -1.81 11.08 -37.66 -0.42 -2.23 16 28 C -0.09 -1.04 6.37 -105.14 -0.67 -1.71 16 29 C -0.10 -1.12 10.02 -39.05 -0.39 -1.51 16 30 C 0.11 2.67 5.51 -3.71 -0.02 2.65 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.13 2.09 4.33 -54.73 -0.24 1.86 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.42 5.34 8.30 -40.82 -0.34 5.00 16 39 H 0.14 1.88 6.30 -52.48 -0.33 1.55 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.11 2.97 5.84 -51.93 -0.30 2.66 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -32.25 368.26 -9.71 -41.95 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.77 Total: 8.41 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -4.65 Total: -1.97 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.03 Total: -50.25 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.15 Total: -19.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.25 -9.71 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595083190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.199 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds