Wall clock time and date at job start Tue Mar 31 2020 23:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48505 * 109.46826 * 274.99410 * 3 2 1 5 5 H 1.48494 * 109.47244 * 34.99802 * 3 2 1 6 6 H 1.48503 * 109.46982 * 155.00052 * 3 2 1 7 7 C 1.37878 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00138 * 185.73271 * 7 2 1 9 9 C 1.50698 * 119.99907 * 5.74268 * 7 2 1 10 10 H 1.09001 * 109.49628 * 306.35500 * 9 7 2 11 11 C 1.53046 * 109.52374 * 186.27616 * 9 7 2 12 12 C 1.53040 * 109.53604 * 178.66547 * 11 9 7 13 13 C 1.52758 * 109.38452 * 61.24007 * 12 11 9 14 14 N 1.46925 * 109.00942 * 305.58416 * 13 12 11 15 15 C 1.34775 * 120.63158 * 233.58290 * 14 13 12 16 16 O 1.21359 * 119.99722 * 171.06494 * 15 14 13 17 17 C 1.49335 * 120.00107 * 351.07310 * 15 14 13 18 18 O 1.21381 * 120.00022 * 353.44315 * 17 15 14 19 19 N 1.34781 * 119.99847 * 173.44811 * 17 15 14 20 20 C 1.39904 * 119.99714 * 183.30229 * 19 17 15 21 21 C 1.39462 * 119.88985 * 324.07898 * 20 19 17 22 22 C 1.37614 * 120.60571 * 179.97438 * 21 20 19 23 23 C 1.39154 * 120.02071 * 0.05058 * 22 21 20 24 24 N 1.37848 * 133.32877 * 179.97438 * 23 22 21 25 25 H 0.97010 * 125.06177 * 359.97364 * 24 23 22 26 26 C 1.36807 * 109.86868 * 179.97438 * 24 23 22 27 27 C 1.34235 * 109.94030 * 359.97438 * 26 24 23 28 28 C 1.40653 * 119.55578 * 359.96635 * 23 22 21 29 29 C 1.38271 * 119.88802 * 144.10100 * 20 19 17 30 30 C 1.46924 * 118.73789 * 53.31268 * 14 13 12 31 31 H 0.97001 * 119.99488 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.45397 * 298.68368 * 11 9 7 33 33 H 1.08996 * 109.45941 * 58.65935 * 11 9 7 34 34 H 1.09004 * 109.49215 * 181.31348 * 12 11 9 35 35 H 1.09000 * 109.49842 * 301.41273 * 12 11 9 36 36 H 1.09003 * 109.50991 * 185.70134 * 13 12 11 37 37 H 1.08999 * 109.43353 * 65.42126 * 13 12 11 38 38 H 0.96996 * 119.99801 * 3.29513 * 19 17 15 39 39 H 1.08007 * 119.70141 * 0.02653 * 21 20 19 40 40 H 1.08000 * 119.99165 * 180.02562 * 22 21 20 41 41 H 1.07993 * 125.02678 * 179.97438 * 26 24 23 42 42 H 1.07997 * 126.49527 * 179.73896 * 27 26 24 43 43 H 1.07997 * 120.20711 * 359.95705 * 29 20 19 44 44 H 1.09002 * 109.58845 * 66.42608 * 30 14 13 45 45 H 1.08999 * 109.59048 * 186.85944 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5036 2.6198 0.8030 6 1 3.5957 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0804 -1.1965 0.0940 9 6 1.2566 -2.4959 -0.1295 10 1 0.4782 -2.5459 0.6319 11 6 2.2277 -3.6643 0.0554 12 6 1.4627 -4.9861 -0.0435 13 6 0.8254 -5.1008 -1.4271 14 7 0.0044 -3.9081 -1.6762 15 6 -1.2888 -4.0275 -2.0363 16 8 -1.9993 -3.0447 -2.0815 17 6 -1.8475 -5.3693 -2.3793 18 8 -1.1126 -6.3327 -2.4500 19 7 -3.1678 -5.5104 -2.6106 20 6 -3.7020 -6.7784 -2.8638 21 6 -2.9638 -7.7106 -3.5925 22 6 -3.4746 -8.9622 -3.8497 23 6 -4.7391 -9.3076 -3.3826 24 7 -5.5022 -10.4517 -3.4764 25 1 -5.2336 -11.2649 -3.9321 26 6 -6.6948 -10.2694 -2.8312 27 6 -6.7483 -9.0342 -2.3084 28 6 -5.4871 -8.3702 -2.6476 29 6 -4.9603 -7.1029 -2.3913 30 6 0.6185 -2.5825 -1.5195 31 1 -0.4849 0.8401 0.0004 32 1 2.9916 -3.6278 -0.7214 33 1 2.7013 -3.5915 1.0343 34 1 2.1508 -5.8171 0.1114 35 1 0.6823 -5.0126 0.7170 36 1 0.1977 -5.9911 -1.4661 37 1 1.6083 -5.1698 -2.1824 38 1 -3.7476 -4.7328 -2.6013 39 1 -1.9817 -7.4482 -3.9576 40 1 -2.8942 -9.6766 -4.4147 41 1 -7.4772 -11.0097 -2.7540 42 1 -7.5680 -8.6086 -1.7488 43 1 -5.5316 -6.3810 -1.8268 44 1 1.3842 -2.4420 -2.2825 45 1 -0.1457 -1.8117 -1.6194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595083190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:22 Heat of formation + Delta-G solvation = -13.263489 kcal Electronic energy + Delta-G solvation = -28964.148645 eV Core-core repulsion = 24946.661153 eV Total energy + Delta-G solvation = -4017.487492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40760 -41.84533 -40.17752 -38.57275 -38.03168 -35.50283 -34.97070 -33.47615 -32.81485 -31.68186 -29.85082 -29.63299 -27.57804 -26.82295 -24.83504 -23.87592 -23.54398 -22.58389 -21.68176 -21.22613 -20.58179 -19.09177 -18.79936 -18.37097 -18.27392 -17.45937 -17.26067 -16.63055 -16.51943 -16.28104 -15.58175 -15.45956 -15.21225 -14.99415 -14.87887 -14.70800 -14.66361 -14.40763 -14.04762 -13.95126 -13.82669 -13.50311 -13.41483 -13.01347 -12.94655 -12.84756 -12.52305 -12.32931 -12.14059 -11.96504 -11.77196 -11.65183 -11.20490 -11.08740 -10.91395 -10.64334 -10.54976 -10.13970 -9.59526 -8.92615 -8.53681 -8.13723 -6.27367 -0.03525 0.23364 0.69182 1.25245 1.42355 1.42899 1.53622 1.87303 2.06755 2.30686 2.41568 2.50669 2.88015 3.16513 3.21459 3.77916 3.98833 4.09884 4.17419 4.24788 4.29190 4.33855 4.43437 4.52580 4.59178 4.67460 4.71680 4.79538 4.89733 4.99097 5.03682 5.11448 5.13009 5.20820 5.21562 5.28740 5.30483 5.40597 5.49287 5.58221 5.74154 5.81982 5.83666 5.90893 5.99359 6.16364 6.30038 6.36198 6.67485 6.77239 6.84922 6.91371 7.41977 8.93105 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002277 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.710424 B =12294.950291 C =12915.701734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.007 1.007 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.073 3.927 14 N -0.573 5.573 15 C 0.490 3.510 16 O -0.555 6.555 17 C 0.521 3.479 18 O -0.502 6.502 19 N -0.632 5.632 20 C 0.098 3.902 21 C -0.111 4.111 22 C -0.108 4.108 23 C 0.073 3.927 24 N -0.587 5.587 25 H 0.431 0.569 26 C 0.073 3.927 27 C -0.234 4.234 28 C -0.114 4.114 29 C -0.100 4.100 30 C 0.126 3.874 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.426 0.574 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.213 0.787 42 H 0.159 0.841 43 H 0.137 0.863 44 H 0.056 0.944 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 -24.291 -8.202 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.011 0.989 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.304 5.304 15 C 0.272 3.728 16 O -0.434 6.434 17 C 0.304 3.696 18 O -0.378 6.378 19 N -0.278 5.278 20 C 0.005 3.995 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.035 4.035 24 N -0.191 5.191 25 H 0.271 0.729 26 C -0.054 4.054 27 C -0.259 4.259 28 C -0.119 4.119 29 C -0.121 4.121 30 C 0.004 3.996 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.264 0.736 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.230 0.770 42 H 0.176 0.824 43 H 0.155 0.845 44 H 0.074 0.926 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.397 -24.432 -8.313 28.212 hybrid contribution 0.195 1.743 0.049 1.754 sum -11.202 -22.689 -8.264 26.619 Atomic orbital electron populations 1.70131 1.07482 1.27431 1.50343 1.25887 0.95543 1.02897 0.94514 0.85561 0.78915 0.79212 0.78108 1.20127 1.21299 1.18667 1.21462 0.93755 0.91373 1.50634 0.91850 1.18909 0.93876 0.93922 0.91455 0.98889 1.21551 0.97879 0.93909 1.01013 1.21867 0.99773 0.98547 0.96304 1.22826 0.96369 0.88275 0.97315 1.48419 1.09354 1.09936 1.62720 1.20260 0.83384 0.89205 0.79903 1.90762 1.58520 1.40289 1.53854 1.20018 0.83247 0.88550 0.77759 1.90463 1.57239 1.40393 1.49743 1.43065 1.07757 1.09764 1.67218 1.17576 0.94873 0.85593 1.01460 1.20919 1.00457 0.93345 0.98485 1.20071 0.93146 0.96797 1.02865 1.18442 0.94242 0.88536 1.02305 1.41896 1.14796 1.13478 1.48960 0.72924 1.22489 0.88972 0.98570 0.95331 1.21981 0.97921 0.95574 1.10435 1.19300 0.96760 0.93532 1.02342 1.20374 0.94749 0.96380 1.00611 1.21914 0.96693 0.81611 0.99358 0.93020 0.92089 0.92832 0.87998 0.93565 0.84650 0.90287 0.73570 0.84922 0.83415 0.77030 0.82367 0.84546 0.92613 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 12.09 21.45 0.26 -55.14 16 2 C 0.01 0.64 5.29 84.65 0.45 1.09 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.53 -29.35 8.48 25.60 0.22 -29.13 16 8 H 0.06 3.35 7.76 -2.91 -0.02 3.33 16 9 C 0.04 1.92 2.11 -11.46 -0.02 1.89 16 10 H -0.01 -0.42 8.10 -2.39 -0.02 -0.44 16 11 C -0.11 -4.24 5.11 30.62 0.16 -4.08 16 12 C -0.13 -4.22 6.06 30.53 0.19 -4.04 16 13 C 0.07 2.45 5.95 86.22 0.51 2.96 16 14 N -0.57 -23.94 2.98 -821.45 -2.45 -26.39 16 15 C 0.49 20.21 7.73 87.23 0.67 20.88 16 16 O -0.55 -26.48 15.92 -3.28 -0.05 -26.53 16 17 C 0.52 17.42 7.56 87.23 0.66 18.07 16 18 O -0.50 -16.42 10.69 -3.34 -0.04 -16.45 16 19 N -0.63 -17.99 5.32 -304.80 -1.62 -19.61 16 20 C 0.10 2.57 6.27 38.16 0.24 2.81 16 21 C -0.11 -2.74 8.65 22.42 0.19 -2.55 16 22 C -0.11 -2.11 10.06 22.34 0.22 -1.89 16 23 C 0.07 1.37 7.27 39.01 0.28 1.65 16 24 N -0.59 -6.55 6.08 -187.51 -1.14 -7.69 16 25 H 0.43 1.93 8.96 -92.70 -0.83 1.10 16 26 C 0.07 0.70 11.81 83.00 0.98 1.68 16 27 C -0.23 -3.60 11.08 23.51 0.26 -3.34 16 28 C -0.11 -2.42 6.37 -20.20 -0.13 -2.55 16 29 C -0.10 -2.34 10.02 22.61 0.23 -2.11 16 30 C 0.13 6.21 5.51 86.37 0.48 6.69 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.14 4.37 4.33 -46.79 -0.20 4.17 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.43 11.35 8.30 -92.71 -0.77 10.58 16 39 H 0.13 3.48 6.30 -2.91 -0.02 3.46 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.07 3.96 5.84 -2.39 -0.01 3.94 16 Total: -1.00 -73.57 368.26 1.84 -71.73 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.74 Total: 25.92 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.59 Total: 8.04 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.95 Total: -108.83 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.09 Total: -42.98 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.57 1.84 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595083190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.465 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds