Wall clock time and date at job start Tue Mar 31 2020 23:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48510 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46989 * 299.99353 * 3 2 1 6 6 H 1.48497 * 109.47650 * 59.99780 * 3 2 1 7 7 C 1.37880 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.49950 * 299.92886 * 9 7 2 11 11 C 1.53046 * 109.52633 * 179.85226 * 9 7 2 12 12 C 1.53038 * 109.54145 * 178.66416 * 11 9 7 13 13 C 1.52763 * 109.38083 * 61.23627 * 12 11 9 14 14 N 1.46927 * 109.01360 * 305.58871 * 13 12 11 15 15 C 1.34774 * 120.63290 * 233.58457 * 14 13 12 16 16 O 1.21361 * 119.99760 * 171.03089 * 15 14 13 17 17 C 1.49327 * 120.00020 * 351.03493 * 15 14 13 18 18 O 1.21393 * 119.99678 * 353.38970 * 17 15 14 19 19 N 1.34768 * 119.99988 * 173.39720 * 17 15 14 20 20 C 1.39771 * 120.00339 * 183.61194 * 19 17 15 21 21 C 1.38482 * 120.17848 * 326.91711 * 20 19 17 22 22 C 1.38685 * 120.57574 * 179.97438 * 21 20 19 23 23 C 1.36682 * 120.59780 * 0.30658 * 22 21 20 24 24 C 1.39733 * 119.91261 * 359.44636 * 23 22 21 25 25 C 1.46493 * 133.98021 * 180.23313 * 24 23 22 26 26 C 1.34259 * 107.00116 * 180.26066 * 25 24 23 27 27 N 1.36770 * 109.90603 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.06844 * 179.97438 * 27 26 25 29 29 C 1.37733 * 109.86322 * 359.97438 * 27 26 25 30 30 C 1.46932 * 118.73455 * 53.30595 * 14 13 12 31 31 H 0.96993 * 119.99654 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.45635 * 298.68445 * 11 9 7 33 33 H 1.08993 * 109.45912 * 58.65520 * 11 9 7 34 34 H 1.08992 * 109.50240 * 181.31340 * 12 11 9 35 35 H 1.09002 * 109.49835 * 301.41652 * 12 11 9 36 36 H 1.09001 * 109.50972 * 185.70317 * 13 12 11 37 37 H 1.09000 * 109.43606 * 65.42776 * 13 12 11 38 38 H 0.97000 * 120.00419 * 3.61557 * 19 17 15 39 39 H 1.08006 * 119.71050 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.69949 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.03848 * 179.71514 * 23 22 21 42 42 H 1.08003 * 126.49668 * 0.26135 * 25 24 23 43 43 H 1.08001 * 125.04570 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.58297 * 66.43364 * 30 14 13 45 45 H 1.08994 * 109.58400 * 186.71150 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6249 -2.5577 0.8908 11 6 2.2445 -3.6633 -0.0025 12 6 1.4800 -4.9887 0.0311 13 6 0.6015 -5.0989 -1.2138 14 7 -0.2562 -3.9091 -1.3012 15 6 -1.5930 -4.0335 -1.4200 16 8 -2.3040 -3.0544 -1.3279 17 6 -2.1991 -5.3761 -1.6650 18 8 -1.4851 -6.3348 -1.8766 19 7 -3.5386 -5.5233 -1.6515 20 6 -4.1039 -6.7923 -1.8055 21 6 -3.4843 -7.7379 -2.6054 22 6 -4.0377 -8.9997 -2.7636 23 6 -5.2072 -9.3299 -2.1380 24 6 -5.8488 -8.3950 -1.3215 25 6 -7.0758 -8.4154 -0.5214 26 6 -7.1892 -7.2079 0.0543 27 7 -6.1356 -6.4164 -0.3122 28 1 -5.9993 -5.5007 -0.0227 29 6 -5.2972 -7.1136 -1.1537 30 6 0.3705 -2.5812 -1.2502 31 1 -0.4849 0.8400 -0.0004 32 1 2.8538 -3.6183 -0.9053 33 1 2.8885 -3.5935 0.8740 34 1 2.1883 -5.8168 0.0524 35 1 0.8516 -5.0237 0.9210 36 1 -0.0190 -5.9923 -1.1435 37 1 1.2337 -5.1594 -2.0997 38 1 -4.1106 -4.7486 -1.5349 39 1 -2.5618 -7.4908 -3.1097 40 1 -3.5424 -9.7264 -3.3904 41 1 -5.6325 -10.3138 -2.2713 42 1 -7.7596 -9.2446 -0.4150 43 1 -7.9933 -6.9060 0.7090 44 1 0.9836 -2.4322 -2.1391 45 1 -0.4024 -1.8139 -1.2066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:48 Heat of formation + Delta-G solvation = 8.373110 kcal Electronic energy + Delta-G solvation = -29373.427530 eV Core-core repulsion = 25356.878271 eV Total energy + Delta-G solvation = -4016.549259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64816 -40.60220 -38.68260 -37.00869 -36.88402 -35.05593 -33.30767 -31.83132 -31.17715 -29.84142 -29.39402 -28.73613 -26.06636 -25.07039 -23.73181 -22.31093 -22.11850 -21.80598 -20.80066 -19.99868 -19.21658 -18.35172 -17.19436 -17.14202 -16.47067 -15.97525 -15.85831 -15.64940 -15.05136 -14.77794 -14.68926 -14.54381 -14.21579 -13.89648 -13.58470 -13.43711 -13.21269 -13.00835 -12.78407 -12.63798 -12.23349 -12.05484 -11.91916 -11.79299 -11.72210 -11.20556 -11.02570 -10.82485 -10.66208 -10.49109 -10.35493 -10.17530 -9.94008 -9.34442 -9.25253 -9.16626 -8.68053 -8.50377 -8.38082 -7.91827 -7.60516 -6.06168 -4.14580 0.85510 1.46395 1.71089 2.46406 2.57078 2.90144 3.26224 3.34830 3.38132 3.46586 3.76281 3.83783 4.37919 4.53395 4.56293 4.73191 4.89585 5.04939 5.24099 5.30610 5.36615 5.42914 5.56775 5.60908 5.71094 5.76672 5.86428 6.12123 6.16142 6.20122 6.30740 6.37033 6.50822 6.54021 6.55972 6.59569 6.66053 6.78649 6.92883 6.93058 7.01182 7.07390 7.11175 7.26918 7.52711 7.74257 7.82102 7.89208 8.05980 8.28683 8.45842 8.89750 9.51273 10.99180 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.002621 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.007928 B =10681.665918 C =11574.615301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.071 3.929 14 N -0.565 5.565 15 C 0.496 3.504 16 O -0.520 6.520 17 C 0.510 3.490 18 O -0.495 6.495 19 N -0.649 5.649 20 C 0.134 3.866 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.088 4.088 24 C -0.093 4.093 25 C -0.207 4.207 26 C 0.054 3.946 27 N -0.593 5.593 28 H 0.416 0.584 29 C 0.077 3.923 30 C 0.108 3.892 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.146 0.854 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.171 0.829 44 H 0.050 0.950 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 -17.087 -2.943 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.051 4.051 14 N -0.297 5.297 15 C 0.277 3.723 16 O -0.397 6.397 17 C 0.294 3.706 18 O -0.370 6.370 19 N -0.295 5.295 20 C 0.038 3.962 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.107 4.107 24 C -0.099 4.099 25 C -0.232 4.232 26 C -0.073 4.073 27 N -0.196 5.196 28 H 0.253 0.747 29 C -0.031 4.031 30 C -0.012 4.012 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.081 0.919 38 H 0.255 0.745 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.188 0.812 44 H 0.069 0.931 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.468 -16.918 -2.973 21.225 hybrid contribution 0.272 1.807 0.288 1.850 sum -12.196 -15.111 -2.685 19.604 Atomic orbital electron populations 1.69888 1.05756 1.26758 1.49538 1.25069 0.94919 0.99346 0.94782 0.86515 0.80098 0.83643 0.77639 1.19738 1.20949 1.20995 1.21126 0.93038 0.89976 1.51566 0.92153 1.18967 0.92652 0.92567 0.93673 0.95209 1.21660 0.98559 0.94166 1.00670 1.21886 0.98637 0.98962 0.97709 1.22608 0.94737 0.89559 0.98192 1.48451 1.04251 1.10368 1.66630 1.19601 0.84153 0.87803 0.80791 1.90787 1.60184 1.38798 1.49942 1.20931 0.82202 0.90490 0.76968 1.90487 1.59107 1.41408 1.46044 1.43157 1.07118 1.08654 1.70530 1.16799 0.92702 0.86712 0.99973 1.21095 1.01101 0.92967 0.97467 1.20554 0.96132 0.96360 1.01421 1.20283 0.95225 0.98481 0.96710 1.19053 0.96668 0.92756 1.01389 1.21667 0.99167 0.98200 1.04215 1.21837 0.92308 0.91482 1.01666 1.41770 1.20900 1.14886 1.42062 0.74675 1.18005 0.94255 0.93280 0.97591 1.22530 0.98848 0.80473 0.99325 0.92702 0.93083 0.92967 0.91935 0.92468 0.85842 0.91925 0.74549 0.83649 0.85553 0.85962 0.83521 0.81186 0.93134 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 11.39 55.43 0.63 -24.43 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.84 8.57 -34.44 -0.30 -14.13 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 0.99 2.25 -91.66 -0.21 0.79 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.27 5.11 -26.69 -0.14 -2.41 16 12 C -0.13 -2.30 6.07 -26.83 -0.16 -2.47 16 13 C 0.07 1.23 5.95 -3.93 -0.02 1.21 16 14 N -0.57 -11.49 2.98 -173.59 -0.52 -12.01 16 15 C 0.50 9.75 7.73 -11.64 -0.09 9.66 16 16 O -0.52 -11.54 15.92 5.49 0.09 -11.45 16 17 C 0.51 8.31 7.58 -11.65 -0.09 8.22 16 18 O -0.50 -8.17 10.53 5.46 0.06 -8.11 16 19 N -0.65 -8.91 5.34 -10.21 -0.05 -8.97 16 20 C 0.13 1.77 6.35 -83.59 -0.53 1.24 16 21 C -0.10 -1.35 8.69 -39.33 -0.34 -1.69 16 22 C -0.12 -1.34 9.97 -39.98 -0.40 -1.74 16 23 C -0.09 -0.91 10.05 -39.59 -0.40 -1.31 16 24 C -0.09 -1.06 6.37 -105.15 -0.67 -1.73 16 25 C -0.21 -1.88 11.08 -37.66 -0.42 -2.29 16 26 C 0.05 0.43 11.82 -16.75 -0.20 0.23 16 27 N -0.59 -5.60 6.07 -10.54 -0.06 -5.66 16 28 H 0.42 3.18 8.96 -40.82 -0.37 2.82 16 29 C 0.08 0.93 7.20 -83.80 -0.60 0.32 16 30 C 0.11 2.56 5.41 -3.71 -0.02 2.54 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 2.07 4.33 -54.71 -0.24 1.83 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.42 5.21 8.30 -40.82 -0.34 4.88 16 39 H 0.15 1.97 6.08 -52.48 -0.32 1.65 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.12 3.38 5.13 -51.93 -0.27 3.12 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -31.41 366.64 -9.75 -41.16 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.72 Total: 10.03 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -4.67 Total: -1.99 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.00 Total: -51.07 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.14 Total: -19.56 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.41 -9.75 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.531 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds