Wall clock time and date at job start Tue Mar 31 2020 23:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48510 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46989 * 299.99353 * 3 2 1 6 6 H 1.48497 * 109.47650 * 59.99780 * 3 2 1 7 7 C 1.37880 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.49950 * 299.92886 * 9 7 2 11 11 C 1.53046 * 109.52633 * 179.85226 * 9 7 2 12 12 C 1.53038 * 109.54145 * 178.66416 * 11 9 7 13 13 C 1.52763 * 109.38083 * 61.23627 * 12 11 9 14 14 N 1.46927 * 109.01360 * 305.58871 * 13 12 11 15 15 C 1.34774 * 120.63290 * 233.58457 * 14 13 12 16 16 O 1.21361 * 119.99760 * 171.03089 * 15 14 13 17 17 C 1.49327 * 120.00020 * 351.03493 * 15 14 13 18 18 O 1.21393 * 119.99678 * 353.38970 * 17 15 14 19 19 N 1.34768 * 119.99988 * 173.39720 * 17 15 14 20 20 C 1.39771 * 120.00339 * 183.61194 * 19 17 15 21 21 C 1.38482 * 120.17848 * 326.91711 * 20 19 17 22 22 C 1.38685 * 120.57574 * 179.97438 * 21 20 19 23 23 C 1.36682 * 120.59780 * 0.30658 * 22 21 20 24 24 C 1.39733 * 119.91261 * 359.44636 * 23 22 21 25 25 C 1.46493 * 133.98021 * 180.23313 * 24 23 22 26 26 C 1.34259 * 107.00116 * 180.26066 * 25 24 23 27 27 N 1.36770 * 109.90603 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.06844 * 179.97438 * 27 26 25 29 29 C 1.37733 * 109.86322 * 359.97438 * 27 26 25 30 30 C 1.46932 * 118.73455 * 53.30595 * 14 13 12 31 31 H 0.96993 * 119.99654 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.45635 * 298.68445 * 11 9 7 33 33 H 1.08993 * 109.45912 * 58.65520 * 11 9 7 34 34 H 1.08992 * 109.50240 * 181.31340 * 12 11 9 35 35 H 1.09002 * 109.49835 * 301.41652 * 12 11 9 36 36 H 1.09001 * 109.50972 * 185.70317 * 13 12 11 37 37 H 1.09000 * 109.43606 * 65.42776 * 13 12 11 38 38 H 0.97000 * 120.00419 * 3.61557 * 19 17 15 39 39 H 1.08006 * 119.71050 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.69949 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.03848 * 179.71514 * 23 22 21 42 42 H 1.08003 * 126.49668 * 0.26135 * 25 24 23 43 43 H 1.08001 * 125.04570 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.58297 * 66.43364 * 30 14 13 45 45 H 1.08994 * 109.58400 * 186.71150 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6249 -2.5577 0.8908 11 6 2.2445 -3.6633 -0.0025 12 6 1.4800 -4.9887 0.0311 13 6 0.6015 -5.0989 -1.2138 14 7 -0.2562 -3.9091 -1.3012 15 6 -1.5930 -4.0335 -1.4200 16 8 -2.3040 -3.0544 -1.3279 17 6 -2.1991 -5.3761 -1.6650 18 8 -1.4851 -6.3348 -1.8766 19 7 -3.5386 -5.5233 -1.6515 20 6 -4.1039 -6.7923 -1.8055 21 6 -3.4843 -7.7379 -2.6054 22 6 -4.0377 -8.9997 -2.7636 23 6 -5.2072 -9.3299 -2.1380 24 6 -5.8488 -8.3950 -1.3215 25 6 -7.0758 -8.4154 -0.5214 26 6 -7.1892 -7.2079 0.0543 27 7 -6.1356 -6.4164 -0.3122 28 1 -5.9993 -5.5007 -0.0227 29 6 -5.2972 -7.1136 -1.1537 30 6 0.3705 -2.5812 -1.2502 31 1 -0.4849 0.8400 -0.0004 32 1 2.8538 -3.6183 -0.9053 33 1 2.8885 -3.5935 0.8740 34 1 2.1883 -5.8168 0.0524 35 1 0.8516 -5.0237 0.9210 36 1 -0.0190 -5.9923 -1.1435 37 1 1.2337 -5.1594 -2.0997 38 1 -4.1106 -4.7486 -1.5349 39 1 -2.5618 -7.4908 -3.1097 40 1 -3.5424 -9.7264 -3.3904 41 1 -5.6325 -10.3138 -2.2713 42 1 -7.7596 -9.2446 -0.4150 43 1 -7.9933 -6.9060 0.7090 44 1 0.9836 -2.4322 -2.1391 45 1 -0.4024 -1.8139 -1.2066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:47 Heat of formation + Delta-G solvation = -11.141395 kcal Electronic energy + Delta-G solvation = -29374.273742 eV Core-core repulsion = 25356.878271 eV Total energy + Delta-G solvation = -4017.395472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60800 -41.82104 -40.10159 -38.60623 -37.87837 -36.18334 -35.17881 -33.52331 -32.02351 -31.63603 -30.23786 -29.57393 -27.68109 -26.87680 -25.04536 -23.61001 -23.20166 -23.07154 -21.79132 -21.16002 -20.67590 -19.52007 -18.65074 -18.35524 -18.06901 -17.42159 -17.17559 -16.69833 -16.52664 -16.28106 -15.76105 -15.65045 -15.47495 -15.13230 -14.96307 -14.80233 -14.67293 -14.43499 -14.00130 -13.88063 -13.66006 -13.52560 -13.08959 -12.92293 -12.86815 -12.58527 -12.54075 -12.33711 -12.25836 -12.14327 -11.83497 -11.70591 -11.60580 -11.15207 -11.00701 -10.57070 -10.27816 -10.08542 -9.61447 -9.19808 -8.44651 -8.13457 -6.29910 -0.15365 0.42434 0.65605 1.16655 1.39985 1.41828 1.53337 1.79984 2.04200 2.17897 2.38513 2.45208 2.92763 3.12374 3.16717 3.82243 4.06385 4.07960 4.09329 4.14456 4.24165 4.31985 4.48585 4.52020 4.57386 4.69293 4.73564 4.78272 4.86962 4.97523 5.03612 5.05317 5.15246 5.20315 5.26232 5.30084 5.36256 5.43116 5.55331 5.66381 5.78495 5.79781 5.83099 5.88748 5.92498 6.16731 6.26830 6.34041 6.57447 6.61963 6.80324 6.87189 7.40033 8.90474 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.002621 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.007928 B =10681.665918 C =11574.615301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.011 1.011 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.071 3.929 14 N -0.572 5.572 15 C 0.490 3.510 16 O -0.554 6.554 17 C 0.519 3.481 18 O -0.497 6.497 19 N -0.633 5.633 20 C 0.109 3.891 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.083 4.083 24 C -0.112 4.112 25 C -0.220 4.220 26 C 0.061 3.939 27 N -0.594 5.594 28 H 0.422 0.578 29 C 0.059 3.941 30 C 0.121 3.879 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.421 0.579 39 H 0.134 0.866 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.171 0.829 43 H 0.209 0.791 44 H 0.048 0.952 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 -19.243 -2.907 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.020 3.980 10 H 0.008 0.992 11 C -0.144 4.144 12 C -0.164 4.164 13 C -0.050 4.050 14 N -0.303 5.303 15 C 0.272 3.728 16 O -0.433 6.433 17 C 0.302 3.698 18 O -0.373 6.373 19 N -0.279 5.279 20 C 0.014 3.986 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.102 4.102 24 C -0.117 4.117 25 C -0.244 4.244 26 C -0.065 4.065 27 N -0.198 5.198 28 H 0.260 0.740 29 C -0.050 4.050 30 C -0.001 4.001 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.096 0.904 38 H 0.259 0.741 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.188 0.812 43 H 0.226 0.774 44 H 0.067 0.933 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.926 -19.114 -2.934 23.260 hybrid contribution 0.285 2.408 0.301 2.444 sum -12.641 -16.705 -2.633 21.114 Atomic orbital electron populations 1.70062 1.07293 1.27305 1.50565 1.25874 0.95628 1.02829 0.94501 0.85496 0.79233 0.79414 0.77468 1.18633 1.20718 1.20878 1.21504 0.93343 0.91229 1.51146 0.91900 1.18904 0.93069 0.93932 0.92132 0.99244 1.21555 0.97755 0.93944 1.01178 1.21858 0.98875 0.98530 0.97147 1.22828 0.94727 0.88454 0.98943 1.48450 1.05040 1.10054 1.66755 1.20196 0.83823 0.89027 0.79712 1.90759 1.60921 1.40445 1.51204 1.20082 0.83113 0.88699 0.77869 1.90471 1.59376 1.40690 1.46781 1.42974 1.06027 1.09531 1.69332 1.16954 0.93800 0.86201 1.01648 1.21154 1.00981 0.93973 0.97758 1.20807 0.96502 0.95920 1.01815 1.20651 0.94662 0.99434 0.95417 1.19534 0.97686 0.92627 1.01895 1.22034 0.98823 0.99488 1.04053 1.22524 0.92125 0.90855 1.00967 1.41933 1.20932 1.15350 1.41561 0.73989 1.18125 0.94284 0.94249 0.98317 1.21998 0.97606 0.81627 0.98827 0.92981 0.92231 0.92697 0.87991 0.93465 0.84723 0.90424 0.74102 0.84830 0.83286 0.83228 0.81187 0.77449 0.93347 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.04 11.39 21.45 0.24 -53.80 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.53 -29.08 8.57 25.60 0.22 -28.86 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.11 -4.24 5.11 30.62 0.16 -4.08 16 12 C -0.13 -4.16 6.07 30.53 0.19 -3.97 16 13 C 0.07 2.40 5.95 86.22 0.51 2.91 16 14 N -0.57 -23.80 2.98 -821.46 -2.45 -26.24 16 15 C 0.49 19.98 7.73 87.23 0.67 20.65 16 16 O -0.55 -25.94 15.92 -3.28 -0.05 -25.99 16 17 C 0.52 17.18 7.58 87.23 0.66 17.84 16 18 O -0.50 -16.24 10.53 -3.38 -0.04 -16.28 16 19 N -0.63 -17.72 5.34 -304.56 -1.63 -19.34 16 20 C 0.11 2.86 6.35 38.29 0.24 3.11 16 21 C -0.12 -2.97 8.69 22.43 0.20 -2.77 16 22 C -0.13 -2.61 9.97 22.01 0.22 -2.39 16 23 C -0.08 -1.53 10.05 22.27 0.22 -1.31 16 24 C -0.11 -2.33 6.37 -20.21 -0.13 -2.46 16 25 C -0.22 -3.37 11.08 23.51 0.26 -3.11 16 26 C 0.06 0.81 11.82 83.01 0.98 1.79 16 27 N -0.59 -10.42 6.07 -187.27 -1.14 -11.56 16 28 H 0.42 6.12 8.96 -92.71 -0.83 5.29 16 29 C 0.06 1.37 7.20 39.13 0.28 1.65 16 30 C 0.12 5.97 5.41 86.36 0.47 6.43 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.14 4.34 4.33 -46.46 -0.20 4.14 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.42 10.91 8.30 -92.71 -0.77 10.14 16 39 H 0.13 3.63 6.08 -2.91 -0.02 3.61 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 41 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.09 4.98 5.13 -2.39 -0.01 4.97 16 Total: -1.00 -70.85 366.64 1.82 -69.04 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.73 Total: 30.13 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.57 Total: 8.43 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.96 Total: -110.94 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.09 Total: -42.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.85 1.82 -69.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.894 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds