Wall clock time and date at job start Wed Apr 1 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99958 * 2 1 4 4 H 1.48497 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47082 * 300.00163 * 3 2 1 6 6 H 1.48510 * 109.46791 * 60.00420 * 3 2 1 7 7 C 1.37879 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00236 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99886 * 170.00332 * 10 9 7 12 12 C 1.53243 * 109.33827 * 187.25236 * 11 10 9 13 13 N 1.47076 * 108.52305 * 306.16935 * 12 11 10 14 14 C 1.34776 * 120.87876 * 231.18465 * 13 12 11 15 15 O 1.21649 * 120.00262 * 4.92919 * 14 13 12 16 16 C 1.47136 * 119.99797 * 184.92778 * 14 13 12 17 17 N 1.35883 * 126.61876 * 282.72418 * 16 14 13 18 18 C 1.29926 * 108.74385 * 179.97438 * 17 16 14 19 19 O 1.34053 * 109.77859 * 359.97438 * 18 17 16 20 20 C 1.34755 * 108.23552 * 0.02562 * 19 18 17 21 21 C 1.47585 * 126.76231 * 180.02562 * 20 19 18 22 22 C 1.39688 * 120.15581 * 184.38334 * 21 20 19 23 23 C 1.37934 * 119.83929 * 179.71607 * 22 21 20 24 24 C 1.38384 * 120.15493 * 0.55099 * 23 22 21 25 25 C 1.38372 * 120.31197 * 359.72318 * 24 23 22 26 26 C 1.37925 * 120.16281 * 359.97438 * 25 24 23 27 27 C 1.47077 * 118.23588 * 51.45630 * 13 12 11 28 28 C 1.46900 * 110.99935 * 294.30359 * 10 9 7 29 29 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46675 * 60.00213 * 9 7 2 31 31 H 1.09001 * 109.47484 * 300.00504 * 9 7 2 32 32 H 1.08994 * 109.49505 * 67.29429 * 11 10 9 33 33 H 1.08999 * 109.51629 * 307.22316 * 11 10 9 34 34 H 1.09004 * 109.62849 * 186.45646 * 12 11 10 35 35 H 1.09008 * 109.62950 * 65.88273 * 12 11 10 36 36 H 1.08003 * 125.11142 * 179.73255 * 18 17 16 37 37 H 1.07997 * 120.08064 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.92389 * 180.27406 * 23 22 21 39 39 H 1.07994 * 119.84071 * 179.73951 * 24 23 22 40 40 H 1.08003 * 119.91952 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.08644 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.62697 * 68.25553 * 27 13 12 43 43 H 1.08999 * 109.62599 * 188.83078 * 27 13 12 44 44 H 1.08998 * 109.49599 * 292.70428 * 28 10 9 45 45 H 1.08996 * 109.49526 * 52.78715 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5213 -4.8935 0.2375 12 6 2.5639 -6.0032 0.4103 13 7 3.4617 -5.9862 -0.7545 14 6 3.7121 -7.1123 -1.4513 15 8 3.1246 -8.1413 -1.1759 16 6 4.6958 -7.0971 -2.5453 17 7 4.5092 -6.6004 -3.7963 18 6 5.6026 -6.7656 -4.4785 19 8 6.5277 -7.3641 -3.7149 20 6 5.9915 -7.5854 -2.4985 21 6 6.6543 -8.2217 -1.3436 22 6 5.9372 -8.4658 -0.1699 23 6 6.5616 -9.0663 0.9035 24 6 7.8980 -9.4163 0.8236 25 6 8.6159 -9.1723 -0.3339 26 6 8.0029 -8.5782 -1.4172 27 6 4.0839 -4.7089 -1.1349 28 6 2.9768 -3.6490 -1.2504 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5572 0.8896 32 1 0.8797 -5.1263 -0.6123 33 1 0.9158 -4.8195 1.1409 34 1 2.0633 -6.9694 0.4728 35 1 3.1395 -5.8265 1.3190 36 1 5.7436 -6.4692 -5.5074 37 1 4.8954 -8.1889 -0.1045 38 1 6.0073 -9.2596 1.8100 39 1 8.3829 -9.8823 1.6686 40 1 9.6585 -9.4484 -0.3894 41 1 8.5643 -8.3887 -2.3202 42 1 4.8028 -4.4103 -0.3720 43 1 4.5887 -4.8191 -2.0946 44 1 2.3150 -3.8992 -2.0796 45 1 3.4273 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:30 Heat of formation + Delta-G solvation = 37.125293 kcal Electronic energy + Delta-G solvation = -29545.843172 eV Core-core repulsion = 25530.540701 eV Total energy + Delta-G solvation = -4015.302471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.56227 -40.06277 -39.24477 -37.56378 -35.10551 -34.40673 -32.91123 -32.41397 -31.29897 -30.89109 -29.22646 -28.20794 -25.90004 -24.44750 -23.81074 -23.32617 -22.63376 -21.88229 -21.51740 -20.61250 -19.30718 -18.00733 -17.44914 -17.00084 -16.50912 -16.39810 -16.11810 -15.62388 -15.42416 -14.98168 -14.76493 -14.44787 -14.24551 -13.97291 -13.88994 -13.67858 -13.58808 -13.49803 -13.22159 -12.76100 -12.36612 -11.98100 -11.80035 -11.59127 -11.35933 -11.29963 -11.09112 -11.00336 -10.91506 -10.75748 -10.64749 -10.54475 -10.26727 -10.06772 -9.88372 -9.31038 -9.28043 -8.60585 -8.47215 -8.41360 -7.34489 -6.06912 -4.08861 0.20132 1.06103 1.61201 2.09164 2.22947 2.41423 2.95463 3.28203 3.35857 3.39849 3.49022 3.87839 4.21486 4.37891 4.41037 4.59300 4.61841 4.78802 4.80651 5.00741 5.07368 5.17344 5.24674 5.28795 5.36895 5.38225 5.49341 5.55029 5.63846 5.68547 5.70201 5.77888 5.86924 5.96812 6.07491 6.11430 6.16265 6.25944 6.42842 6.47998 6.55271 6.59501 7.20079 7.26194 7.27600 7.34829 7.73361 7.99295 8.00068 8.10758 8.46370 8.98502 9.55706 11.03983 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.002793 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.768382 B =10022.862376 C =10269.459312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.116 3.884 13 N -0.589 5.589 14 C 0.605 3.395 15 O -0.533 6.533 16 C -0.034 4.034 17 N -0.452 5.452 18 C 0.181 3.819 19 O -0.193 6.193 20 C 0.048 3.952 21 C -0.027 4.027 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.122 4.122 26 C -0.093 4.093 27 C 0.112 3.888 28 C 0.054 3.946 29 H 0.261 0.739 30 H -0.008 1.008 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.258 0.742 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.029 0.971 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.019 -18.047 -3.489 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.006 4.006 13 N -0.321 5.321 14 C 0.391 3.609 15 O -0.411 6.411 16 C -0.156 4.156 17 N -0.180 5.180 18 C -0.046 4.046 19 O -0.079 6.079 20 C -0.007 4.007 21 C -0.027 4.027 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.111 4.111 27 C -0.011 4.011 28 C -0.075 4.075 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.274 0.726 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.335 -18.090 -3.200 24.583 hybrid contribution 0.331 0.750 -0.815 1.156 sum 16.665 -17.340 -4.015 24.383 Atomic orbital electron populations 1.69964 1.06090 1.26758 1.50847 1.24995 0.94856 0.99358 0.95373 0.86447 0.80046 0.83419 0.77536 1.19638 1.21112 1.20993 1.21170 0.93488 0.89853 1.50243 0.91765 1.19729 0.89982 0.87111 0.96296 1.62102 1.28063 1.02713 1.33210 1.22398 0.94834 0.90432 1.01208 1.21910 0.91730 1.00064 0.86869 1.48170 1.45816 1.08210 1.29917 1.16677 0.80348 0.83692 0.80211 1.90833 1.49785 1.31776 1.68669 1.21825 0.94086 1.05371 0.94298 1.70798 1.25647 1.19012 1.02581 1.28124 0.81492 0.96037 0.98933 1.84382 1.42318 1.60600 1.20610 1.21576 0.91735 1.02434 0.84935 1.17574 0.93773 1.01487 0.89906 1.21628 1.00986 0.96825 0.91505 1.21114 0.94957 0.98465 0.98563 1.21387 0.94351 0.98525 0.97955 1.21084 1.00254 0.99530 0.93139 1.21262 0.93064 0.97540 0.99272 1.22130 0.96320 0.82170 1.00467 1.22366 0.94950 0.98720 0.91502 0.92912 0.99017 0.94956 0.95270 0.89754 0.89033 0.90324 0.72610 0.84325 0.84975 0.85425 0.85298 0.85251 0.90480 0.90409 0.95286 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 9 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 10 N -0.54 -11.18 4.62 -235.47 -1.09 -12.27 16 11 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 12 C 0.12 1.78 6.61 -3.60 -0.02 1.76 16 13 N -0.59 -9.43 3.00 -173.55 -0.52 -9.95 16 14 C 0.60 10.03 5.16 -12.65 -0.07 9.96 16 15 O -0.53 -9.87 15.30 5.23 0.08 -9.79 16 16 C -0.03 -0.51 5.15 -82.35 -0.42 -0.93 16 17 N -0.45 -6.33 10.83 -11.04 -0.12 -6.45 16 18 C 0.18 1.74 13.16 51.96 0.68 2.43 16 19 O -0.19 -2.08 10.56 5.13 0.05 -2.03 16 20 C 0.05 0.63 7.14 -35.66 -0.25 0.37 16 21 C -0.03 -0.32 5.87 -105.00 -0.62 -0.94 16 22 C -0.09 -1.12 9.42 -39.15 -0.37 -1.49 16 23 C -0.11 -1.10 10.03 -39.64 -0.40 -1.49 16 24 C -0.10 -0.83 10.04 -39.48 -0.40 -1.23 16 25 C -0.12 -0.97 10.03 -39.65 -0.40 -1.37 16 26 C -0.09 -0.89 9.74 -39.15 -0.38 -1.27 16 27 C 0.11 1.77 6.51 -3.37 -0.02 1.75 16 28 C 0.05 1.03 5.47 -3.46 -0.02 1.01 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H -0.01 -0.22 8.13 -51.93 -0.42 -0.64 16 31 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 34 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 35 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.26 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.14 1.95 4.01 -52.49 -0.21 1.74 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 41 H 0.13 1.02 7.96 -52.49 -0.42 0.60 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.17 6.07 -51.93 -0.32 0.85 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.96 6.67 -51.93 -0.35 1.62 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -33.76 373.05 -9.17 -42.93 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.80 Total: -0.10 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.11 Total: 1.46 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.99 Total: -54.26 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.13 Total: -11.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.76 -9.17 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.050 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds