Wall clock time and date at job start Wed Apr 1 2020 00:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99958 * 2 1 4 4 H 1.48497 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47082 * 300.00163 * 3 2 1 6 6 H 1.48510 * 109.46791 * 60.00420 * 3 2 1 7 7 C 1.37879 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00236 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99886 * 170.00332 * 10 9 7 12 12 C 1.53243 * 109.33827 * 187.25236 * 11 10 9 13 13 N 1.47076 * 108.52305 * 306.16935 * 12 11 10 14 14 C 1.34776 * 120.87876 * 231.18465 * 13 12 11 15 15 O 1.21649 * 120.00262 * 4.92919 * 14 13 12 16 16 C 1.47136 * 119.99797 * 184.92778 * 14 13 12 17 17 N 1.35883 * 126.61876 * 282.72418 * 16 14 13 18 18 C 1.29926 * 108.74385 * 179.97438 * 17 16 14 19 19 O 1.34053 * 109.77859 * 359.97438 * 18 17 16 20 20 C 1.34755 * 108.23552 * 0.02562 * 19 18 17 21 21 C 1.47585 * 126.76231 * 180.02562 * 20 19 18 22 22 C 1.39688 * 120.15581 * 184.38334 * 21 20 19 23 23 C 1.37934 * 119.83929 * 179.71607 * 22 21 20 24 24 C 1.38384 * 120.15493 * 0.55099 * 23 22 21 25 25 C 1.38372 * 120.31197 * 359.72318 * 24 23 22 26 26 C 1.37925 * 120.16281 * 359.97438 * 25 24 23 27 27 C 1.47077 * 118.23588 * 51.45630 * 13 12 11 28 28 C 1.46900 * 110.99935 * 294.30359 * 10 9 7 29 29 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46675 * 60.00213 * 9 7 2 31 31 H 1.09001 * 109.47484 * 300.00504 * 9 7 2 32 32 H 1.08994 * 109.49505 * 67.29429 * 11 10 9 33 33 H 1.08999 * 109.51629 * 307.22316 * 11 10 9 34 34 H 1.09004 * 109.62849 * 186.45646 * 12 11 10 35 35 H 1.09008 * 109.62950 * 65.88273 * 12 11 10 36 36 H 1.08003 * 125.11142 * 179.73255 * 18 17 16 37 37 H 1.07997 * 120.08064 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.92389 * 180.27406 * 23 22 21 39 39 H 1.07994 * 119.84071 * 179.73951 * 24 23 22 40 40 H 1.08003 * 119.91952 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.08644 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.62697 * 68.25553 * 27 13 12 43 43 H 1.08999 * 109.62599 * 188.83078 * 27 13 12 44 44 H 1.08998 * 109.49599 * 292.70428 * 28 10 9 45 45 H 1.08996 * 109.49526 * 52.78715 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5213 -4.8935 0.2375 12 6 2.5639 -6.0032 0.4103 13 7 3.4617 -5.9862 -0.7545 14 6 3.7121 -7.1123 -1.4513 15 8 3.1246 -8.1413 -1.1759 16 6 4.6958 -7.0971 -2.5453 17 7 4.5092 -6.6004 -3.7963 18 6 5.6026 -6.7656 -4.4785 19 8 6.5277 -7.3641 -3.7149 20 6 5.9915 -7.5854 -2.4985 21 6 6.6543 -8.2217 -1.3436 22 6 5.9372 -8.4658 -0.1699 23 6 6.5616 -9.0663 0.9035 24 6 7.8980 -9.4163 0.8236 25 6 8.6159 -9.1723 -0.3339 26 6 8.0029 -8.5782 -1.4172 27 6 4.0839 -4.7089 -1.1349 28 6 2.9768 -3.6490 -1.2504 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5572 0.8896 32 1 0.8797 -5.1263 -0.6123 33 1 0.9158 -4.8195 1.1409 34 1 2.0633 -6.9694 0.4728 35 1 3.1395 -5.8265 1.3190 36 1 5.7436 -6.4692 -5.5074 37 1 4.8954 -8.1889 -0.1045 38 1 6.0073 -9.2596 1.8100 39 1 8.3829 -9.8823 1.6686 40 1 9.6585 -9.4484 -0.3894 41 1 8.5643 -8.3887 -2.3202 42 1 4.8028 -4.4103 -0.3720 43 1 4.5887 -4.8191 -2.0946 44 1 2.3150 -3.8992 -2.0796 45 1 3.4273 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:29 Heat of formation + Delta-G solvation = 12.759620 kcal Electronic energy + Delta-G solvation = -29546.899746 eV Core-core repulsion = 25530.540701 eV Total energy + Delta-G solvation = -4016.359046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.44775 -41.34019 -40.00017 -39.07133 -36.19717 -35.89094 -34.43506 -33.67831 -32.30866 -31.99527 -30.38405 -29.71331 -27.54585 -25.66968 -24.78671 -24.57321 -23.89411 -23.14528 -22.48947 -21.88454 -20.53229 -19.10890 -18.51575 -18.41532 -17.90044 -17.48620 -17.19919 -16.71939 -16.56899 -16.27864 -16.06705 -15.89410 -15.55632 -15.38285 -15.07348 -15.00693 -14.61246 -14.47258 -14.18978 -13.95697 -13.92888 -13.62948 -13.12187 -12.80777 -12.70556 -12.62697 -12.47676 -12.43727 -12.33154 -12.19220 -12.09713 -11.87315 -11.78509 -11.38527 -11.29632 -11.01113 -10.63406 -10.02358 -9.96659 -9.25171 -9.13857 -8.21075 -6.31473 -0.62311 0.36038 0.82808 1.01901 1.33735 1.37934 1.42542 1.43211 1.56643 1.80183 2.40450 2.77561 2.94278 3.10201 3.17391 3.32897 3.54340 3.81610 3.88167 3.92676 3.93398 4.10240 4.15351 4.19159 4.26044 4.28956 4.33165 4.43120 4.46739 4.62290 4.63854 4.75616 4.84536 4.85939 4.91940 5.00828 5.04286 5.13194 5.17964 5.29262 5.36978 5.41797 5.48207 5.62590 5.90110 5.99024 6.03529 6.22193 6.39027 6.50925 6.73542 6.84019 7.38495 8.90649 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.002793 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.768382 B =10022.862376 C =10269.459312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.209 3.791 10 N -0.535 5.535 11 C 0.042 3.958 12 C 0.125 3.875 13 N -0.593 5.593 14 C 0.609 3.391 15 O -0.561 6.561 16 C -0.071 4.071 17 N -0.497 5.497 18 C 0.208 3.792 19 O -0.186 6.186 20 C 0.056 3.944 21 C -0.054 4.054 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.096 4.096 25 C -0.117 4.117 26 C -0.094 4.094 27 C 0.128 3.872 28 C 0.058 3.942 29 H 0.264 0.736 30 H -0.042 1.042 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.311 0.689 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.010 0.990 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.872 -18.565 -3.628 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.087 4.087 12 C 0.003 3.997 13 N -0.324 5.324 14 C 0.396 3.604 15 O -0.441 6.441 16 C -0.192 4.192 17 N -0.226 5.226 18 C -0.019 4.019 19 O -0.073 6.073 20 C 0.000 4.000 21 C -0.054 4.054 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.111 4.111 27 C 0.006 3.994 28 C -0.071 4.071 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.325 0.675 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.181 0.819 41 H 0.163 0.837 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.029 0.971 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.196 -18.625 -3.334 27.675 hybrid contribution -0.826 0.804 -0.801 1.404 sum 19.370 -17.821 -4.134 26.643 Atomic orbital electron populations 1.70099 1.07881 1.27893 1.51795 1.25941 0.95703 1.03328 0.94760 0.85306 0.79158 0.78418 0.77572 1.18257 1.20668 1.20530 1.21474 0.93806 0.90671 1.49989 0.91284 1.19388 0.90027 0.88791 0.93547 1.62044 1.27043 1.02750 1.34113 1.22464 0.95552 0.89864 1.00838 1.21847 0.91268 0.99043 0.87541 1.48203 1.45896 1.08291 1.30007 1.16899 0.80112 0.83112 0.80243 1.90792 1.51049 1.32668 1.69578 1.21605 0.94790 1.08213 0.94556 1.70748 1.27936 1.21132 1.02738 1.29287 0.79821 0.92948 0.99821 1.84417 1.42289 1.60654 1.19938 1.21757 0.91129 1.01370 0.85755 1.17753 0.95046 1.03043 0.89607 1.21581 1.00228 0.98698 0.92924 1.21352 0.96106 0.98235 0.98320 1.21794 0.93468 0.97129 0.99016 1.21522 1.01734 0.97994 0.92253 1.21526 0.92023 0.97044 1.00555 1.21958 0.94937 0.80941 1.01612 1.22326 0.95251 0.99489 0.90013 0.92705 1.02477 0.97216 0.96910 0.88999 0.88383 0.88504 0.67460 0.86814 0.83791 0.82257 0.81949 0.83651 0.89202 0.89273 0.97128 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.52 -28.97 8.41 25.60 0.22 -28.75 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 9 C 0.21 11.12 4.72 85.56 0.40 11.52 16 10 N -0.53 -23.08 4.62 -898.91 -4.15 -27.23 16 11 C 0.04 1.56 5.62 86.39 0.49 2.04 16 12 C 0.12 3.89 6.61 86.35 0.57 4.47 16 13 N -0.59 -19.35 3.00 -821.23 -2.47 -21.82 16 14 C 0.61 20.83 5.16 86.58 0.45 21.28 16 15 O -0.56 -21.71 15.30 -4.19 -0.06 -21.77 16 16 C -0.07 -2.16 5.15 40.93 0.21 -1.95 16 17 N -0.50 -13.70 10.83 -303.74 -3.29 -16.98 16 18 C 0.21 3.55 13.16 130.52 1.72 5.26 16 19 O -0.19 -3.66 10.56 -4.57 -0.05 -3.71 16 20 C 0.06 1.42 7.14 24.81 0.18 1.60 16 21 C -0.05 -1.25 5.87 -20.11 -0.12 -1.37 16 22 C -0.12 -2.84 9.42 22.55 0.21 -2.63 16 23 C -0.12 -2.21 10.03 22.23 0.22 -1.99 16 24 C -0.10 -1.24 10.04 22.34 0.22 -1.01 16 25 C -0.12 -1.44 10.03 22.23 0.22 -1.22 16 26 C -0.09 -1.56 9.74 22.55 0.22 -1.34 16 27 C 0.13 4.07 6.51 86.50 0.56 4.64 16 28 C 0.06 2.29 5.47 86.54 0.47 2.76 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H -0.04 -2.51 8.13 -2.39 -0.02 -2.53 16 31 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 3.24 7.99 -2.39 -0.02 3.22 16 34 H 0.10 2.97 7.04 -2.39 -0.02 2.95 16 35 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.31 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.11 3.34 4.01 -2.91 -0.01 3.32 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.15 1.86 7.96 -2.91 -0.02 1.83 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.09 2.67 6.07 -2.39 -0.01 2.66 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.09 3.61 6.67 -2.39 -0.02 3.60 16 Total: -1.00 -76.92 373.05 0.02 -76.90 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.02 Total: 11.23 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 6.71 Total: 13.81 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -9.62 Total: -122.03 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.11 Total: -25.48 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -76.92 0.02 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.660 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds