Wall clock time and date at job start Tue Mar 31 2020 23:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48504 * 109.47513 * 270.00025 * 3 2 1 5 5 H 1.48501 * 109.47229 * 30.00076 * 3 2 1 6 6 H 1.48504 * 109.47005 * 150.00097 * 3 2 1 7 7 C 1.37875 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99905 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47038 * 175.06336 * 9 7 2 11 11 C 1.46894 * 111.00365 * 295.16724 * 10 9 7 12 12 C 1.53236 * 109.34274 * 187.25520 * 11 10 9 13 13 N 1.47076 * 108.51977 * 306.16262 * 12 11 10 14 14 C 1.34774 * 120.88355 * 231.18741 * 13 12 11 15 15 O 1.21581 * 120.00353 * 5.87175 * 14 13 12 16 16 C 1.47566 * 119.99787 * 185.87300 * 14 13 12 17 17 C 1.38910 * 120.29678 * 53.49215 * 16 14 13 18 18 C 1.40555 * 118.06536 * 179.97438 * 17 16 14 19 19 C 1.40541 * 121.12672 * 180.02562 * 18 17 16 20 20 C 1.36153 * 119.63868 * 180.02562 * 19 18 17 21 21 C 1.39329 * 120.82907 * 359.95484 * 20 19 18 22 22 C 1.36133 * 121.08026 * 0.02562 * 21 20 19 23 23 C 1.40537 * 119.82969 * 359.97438 * 22 21 20 24 24 N 1.33814 * 120.74635 * 180.02562 * 23 22 21 25 25 C 1.31378 * 121.65872 * 180.02562 * 24 23 22 26 26 O 1.35411 * 119.32149 * 179.97438 * 25 24 23 27 27 C 1.47083 * 118.23500 * 51.46560 * 13 12 11 28 28 C 1.46909 * 111.00054 * 59.46882 * 10 9 7 29 29 H 0.97005 * 119.99837 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47922 * 55.05955 * 9 7 2 31 31 H 1.09008 * 109.46880 * 295.05766 * 9 7 2 32 32 H 1.09004 * 109.49334 * 67.28984 * 11 10 9 33 33 H 1.09002 * 109.48893 * 307.21442 * 11 10 9 34 34 H 1.09005 * 109.62358 * 186.45821 * 12 11 10 35 35 H 1.08996 * 109.63183 * 65.87748 * 12 11 10 36 36 H 1.08000 * 120.96758 * 359.95186 * 17 16 14 37 37 H 1.07999 * 120.18235 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.58311 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.45578 * 180.30322 * 21 20 19 40 40 H 1.08004 * 120.09009 * 180.02562 * 22 21 20 41 41 H 0.96698 * 114.00042 * 270.00522 * 26 25 24 42 42 H 1.09003 * 109.63076 * 68.24359 * 27 13 12 43 43 H 1.08995 * 109.62985 * 188.82990 * 27 13 12 44 44 H 1.08995 * 109.49145 * 292.70658 * 28 10 9 45 45 H 1.09001 * 109.49138 * 52.78731 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2012 -3.6131 -0.1180 11 6 2.8924 -3.5799 -1.4138 12 6 3.7347 -4.8502 -1.5724 13 7 4.6152 -4.9762 -0.4011 14 6 5.9401 -5.1735 -0.5496 15 8 6.4388 -5.1431 -1.6580 16 6 6.7855 -5.4264 0.6331 17 6 6.4614 -6.4439 1.5215 18 6 7.2995 -6.6440 2.6320 19 6 7.0324 -7.6551 3.5709 20 6 7.8642 -7.8219 4.6358 21 6 8.9785 -7.0031 4.8066 22 6 9.2672 -6.0144 3.9163 23 6 8.4331 -5.8100 2.8038 24 7 8.6999 -4.8440 1.9171 25 6 7.9322 -4.6369 0.8713 26 8 8.2464 -3.6455 0.0041 27 6 4.0105 -4.8874 0.9368 28 6 3.1582 -3.6098 0.9966 29 1 -0.4850 0.8401 0.0004 30 1 0.5600 -2.5197 -0.8421 31 1 0.6920 -2.5958 0.9314 32 1 3.5414 -2.7053 -1.4575 33 1 2.1572 -3.5283 -2.2169 34 1 4.3376 -4.7790 -2.4777 35 1 3.0792 -5.7190 -1.6329 36 1 5.5906 -7.0629 1.3638 37 1 6.1716 -8.2958 3.4488 38 1 7.6584 -8.5994 5.3565 39 1 9.6262 -7.1581 5.6567 40 1 10.1354 -5.3893 4.0641 41 1 7.8494 -2.7913 0.2227 42 1 3.3809 -5.7597 1.1127 43 1 4.7958 -4.8408 1.6912 44 1 3.8035 -2.7348 0.9193 45 1 2.6157 -3.5799 1.9416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:02 Heat of formation + Delta-G solvation = 0.676974 kcal Electronic energy + Delta-G solvation = -29622.760575 eV Core-core repulsion = 25605.877586 eV Total energy + Delta-G solvation = -4016.882989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41951 -39.83601 -38.48202 -37.41911 -36.08651 -34.62149 -33.82681 -32.38093 -31.19496 -30.29196 -30.05384 -28.18428 -25.71636 -24.75533 -24.06822 -23.24713 -22.50317 -22.37963 -20.87800 -19.46631 -19.11816 -18.33059 -17.52428 -16.65193 -16.42333 -16.34160 -15.87748 -15.17678 -15.04842 -14.84787 -14.65007 -14.54155 -14.42002 -13.99862 -13.90110 -13.70258 -13.54641 -13.37817 -12.73474 -12.34556 -12.31798 -12.00414 -11.93207 -11.72369 -11.68803 -11.22782 -11.21324 -11.08051 -10.82605 -10.75253 -10.68583 -10.33363 -10.18291 -9.97588 -9.74617 -9.56918 -8.98309 -8.59676 -8.53033 -8.52211 -7.35387 -6.12584 -4.22331 -0.07462 0.30434 1.55274 2.28504 2.70348 3.03273 3.21469 3.28983 3.30159 3.30821 3.69939 4.11485 4.21050 4.32339 4.32801 4.45909 4.63379 4.75349 4.80047 4.87065 5.00543 5.17056 5.21241 5.34678 5.37244 5.38551 5.44216 5.54351 5.62328 5.63569 5.78962 5.91155 5.93864 5.99945 6.01789 6.06059 6.31498 6.40702 6.49182 6.62546 6.65286 7.12060 7.25140 7.40623 7.42274 7.57744 7.78498 7.87807 8.09228 8.15117 8.17031 8.87136 9.45509 10.92656 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002995 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.096137 B = 9348.225612 C = 9571.278140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.116 3.884 13 N -0.599 5.599 14 C 0.563 3.437 15 O -0.523 6.523 16 C -0.185 4.185 17 C -0.005 4.005 18 C -0.118 4.118 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.089 4.089 22 C -0.100 4.100 23 C 0.164 3.836 24 N -0.497 5.497 25 C 0.387 3.613 26 O -0.468 6.468 27 C 0.106 3.894 28 C 0.050 3.950 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.407 0.593 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -16.089 9.263 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.006 4.006 13 N -0.333 5.333 14 C 0.349 3.651 15 O -0.399 6.399 16 C -0.192 4.192 17 C -0.031 4.031 18 C -0.120 4.120 19 C -0.101 4.101 20 C -0.141 4.141 21 C -0.109 4.109 22 C -0.119 4.119 23 C 0.042 3.958 24 N -0.216 5.216 25 C 0.193 3.807 26 O -0.275 6.275 27 C -0.017 4.017 28 C -0.079 4.079 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.267 0.733 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.140 -16.280 8.545 23.195 hybrid contribution -0.116 1.817 0.075 1.823 sum 14.024 -14.463 8.620 21.912 Atomic orbital electron populations 1.69936 1.06010 1.26985 1.49789 1.24951 0.94766 0.99182 0.94730 0.86652 0.79865 0.83586 0.78265 1.20535 1.21047 1.20010 1.21714 0.93231 0.92102 1.52206 0.92628 1.19764 0.90657 0.85266 0.98033 1.62501 1.16445 1.47090 1.00410 1.22243 0.96820 0.95158 0.93685 1.21903 0.91758 0.99094 0.87869 1.48142 1.06086 1.70433 1.08594 1.17853 0.81672 0.77623 0.87983 1.90812 1.72749 1.50651 1.25678 1.21038 0.97963 1.01562 0.98647 1.21904 0.97241 0.94016 0.89987 1.18760 0.97172 0.98961 0.97156 1.21041 0.99537 0.96105 0.93415 1.20946 0.95068 0.99951 0.98166 1.20979 0.96934 0.94304 0.98716 1.20832 0.99526 0.98771 0.92787 1.18656 0.92944 0.90717 0.93511 1.67512 1.30433 1.20567 1.03093 1.19101 0.86369 0.89432 0.85819 1.84747 1.75105 1.21022 1.46651 1.22211 0.96642 1.00066 0.82827 1.22309 0.94642 0.94633 0.96343 0.92693 0.94577 0.95207 0.93834 0.90165 0.89233 0.91020 0.83091 0.84759 0.85196 0.85030 0.84438 0.73347 0.90708 0.90629 0.93835 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.55 -14.52 7.76 -34.44 -0.27 -14.79 16 8 H 0.06 1.46 5.88 -52.49 -0.31 1.15 16 9 C 0.19 4.54 5.11 -4.98 -0.03 4.51 16 10 N -0.54 -10.55 4.83 -235.46 -1.14 -11.68 16 11 C 0.05 0.92 5.25 -3.71 -0.02 0.90 16 12 C 0.12 1.78 6.61 -3.61 -0.02 1.75 16 13 N -0.60 -8.86 3.00 -173.40 -0.52 -9.38 16 14 C 0.56 8.85 6.84 -12.46 -0.09 8.76 16 15 O -0.52 -10.03 16.17 0.68 0.01 -10.02 16 16 C -0.19 -2.52 4.64 -104.70 -0.49 -3.01 16 17 C -0.01 -0.06 7.68 -38.46 -0.30 -0.35 16 18 C -0.12 -1.22 5.74 -106.80 -0.61 -1.84 16 19 C -0.08 -0.62 9.77 -39.46 -0.39 -1.00 16 20 C -0.12 -0.79 9.96 -39.93 -0.40 -1.19 16 21 C -0.09 -0.61 9.94 -39.93 -0.40 -1.01 16 22 C -0.10 -0.93 9.97 -39.47 -0.39 -1.33 16 23 C 0.16 1.95 6.61 -84.78 -0.56 1.39 16 24 N -0.50 -6.95 10.33 -10.76 -0.11 -7.06 16 25 C 0.39 5.58 7.73 -16.60 -0.13 5.46 16 26 O -0.47 -6.75 12.70 -22.54 -0.29 -7.04 16 27 C 0.11 1.40 5.71 -3.36 -0.02 1.38 16 28 C 0.05 0.86 5.17 -3.46 -0.02 0.85 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 31 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.04 0.90 7.11 -51.93 -0.37 0.53 16 33 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 34 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.15 1.24 7.76 -52.49 -0.41 0.83 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.41 4.19 9.06 45.56 0.41 4.60 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.89 5.53 -51.93 -0.29 0.60 16 44 H 0.04 0.85 6.62 -51.93 -0.34 0.50 16 45 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -33.47 369.31 -10.00 -43.47 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.02 Total: 2.63 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -4.21 Total: 2.20 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -1.03 Total: -52.73 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.28 Total: -17.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.47 -10.00 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.145 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds