Wall clock time and date at job start Tue Mar 31 2020 23:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48504 * 109.47513 * 270.00025 * 3 2 1 5 5 H 1.48501 * 109.47229 * 30.00076 * 3 2 1 6 6 H 1.48504 * 109.47005 * 150.00097 * 3 2 1 7 7 C 1.37875 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99905 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47038 * 175.06336 * 9 7 2 11 11 C 1.46894 * 111.00365 * 295.16724 * 10 9 7 12 12 C 1.53236 * 109.34274 * 187.25520 * 11 10 9 13 13 N 1.47076 * 108.51977 * 306.16262 * 12 11 10 14 14 C 1.34774 * 120.88355 * 231.18741 * 13 12 11 15 15 O 1.21581 * 120.00353 * 5.87175 * 14 13 12 16 16 C 1.47566 * 119.99787 * 185.87300 * 14 13 12 17 17 C 1.38910 * 120.29678 * 53.49215 * 16 14 13 18 18 C 1.40555 * 118.06536 * 179.97438 * 17 16 14 19 19 C 1.40541 * 121.12672 * 180.02562 * 18 17 16 20 20 C 1.36153 * 119.63868 * 180.02562 * 19 18 17 21 21 C 1.39329 * 120.82907 * 359.95484 * 20 19 18 22 22 C 1.36133 * 121.08026 * 0.02562 * 21 20 19 23 23 C 1.40537 * 119.82969 * 359.97438 * 22 21 20 24 24 N 1.33814 * 120.74635 * 180.02562 * 23 22 21 25 25 C 1.31378 * 121.65872 * 180.02562 * 24 23 22 26 26 O 1.35411 * 119.32149 * 179.97438 * 25 24 23 27 27 C 1.47083 * 118.23500 * 51.46560 * 13 12 11 28 28 C 1.46909 * 111.00054 * 59.46882 * 10 9 7 29 29 H 0.97005 * 119.99837 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47922 * 55.05955 * 9 7 2 31 31 H 1.09008 * 109.46880 * 295.05766 * 9 7 2 32 32 H 1.09004 * 109.49334 * 67.28984 * 11 10 9 33 33 H 1.09002 * 109.48893 * 307.21442 * 11 10 9 34 34 H 1.09005 * 109.62358 * 186.45821 * 12 11 10 35 35 H 1.08996 * 109.63183 * 65.87748 * 12 11 10 36 36 H 1.08000 * 120.96758 * 359.95186 * 17 16 14 37 37 H 1.07999 * 120.18235 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.58311 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.45578 * 180.30322 * 21 20 19 40 40 H 1.08004 * 120.09009 * 180.02562 * 22 21 20 41 41 H 0.96698 * 114.00042 * 270.00522 * 26 25 24 42 42 H 1.09003 * 109.63076 * 68.24359 * 27 13 12 43 43 H 1.08995 * 109.62985 * 188.82990 * 27 13 12 44 44 H 1.08995 * 109.49145 * 292.70658 * 28 10 9 45 45 H 1.09001 * 109.49138 * 52.78731 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2012 -3.6131 -0.1180 11 6 2.8924 -3.5799 -1.4138 12 6 3.7347 -4.8502 -1.5724 13 7 4.6152 -4.9762 -0.4011 14 6 5.9401 -5.1735 -0.5496 15 8 6.4388 -5.1431 -1.6580 16 6 6.7855 -5.4264 0.6331 17 6 6.4614 -6.4439 1.5215 18 6 7.2995 -6.6440 2.6320 19 6 7.0324 -7.6551 3.5709 20 6 7.8642 -7.8219 4.6358 21 6 8.9785 -7.0031 4.8066 22 6 9.2672 -6.0144 3.9163 23 6 8.4331 -5.8100 2.8038 24 7 8.6999 -4.8440 1.9171 25 6 7.9322 -4.6369 0.8713 26 8 8.2464 -3.6455 0.0041 27 6 4.0105 -4.8874 0.9368 28 6 3.1582 -3.6098 0.9966 29 1 -0.4850 0.8401 0.0004 30 1 0.5600 -2.5197 -0.8421 31 1 0.6920 -2.5958 0.9314 32 1 3.5414 -2.7053 -1.4575 33 1 2.1572 -3.5283 -2.2169 34 1 4.3376 -4.7790 -2.4777 35 1 3.0792 -5.7190 -1.6329 36 1 5.5906 -7.0629 1.3638 37 1 6.1716 -8.2958 3.4488 38 1 7.6584 -8.5994 5.3565 39 1 9.6262 -7.1581 5.6567 40 1 10.1354 -5.3893 4.0641 41 1 7.8494 -2.7913 0.2227 42 1 3.3809 -5.7597 1.1127 43 1 4.7958 -4.8408 1.6912 44 1 3.8035 -2.7348 0.9193 45 1 2.6157 -3.5799 1.9416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:01 Heat of formation + Delta-G solvation = -25.491763 kcal Electronic energy + Delta-G solvation = -29623.895337 eV Core-core repulsion = 25605.877586 eV Total energy + Delta-G solvation = -4018.017750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31448 -40.95972 -39.47293 -38.80298 -36.92596 -36.08947 -34.82963 -34.21719 -32.32515 -31.32442 -30.76406 -29.81051 -27.32651 -25.81136 -25.03510 -24.50055 -24.01226 -23.16085 -22.22959 -20.58063 -20.20443 -19.24003 -18.74842 -18.19358 -17.69315 -17.38627 -16.76537 -16.74570 -16.19987 -16.02895 -15.96994 -15.56562 -15.43714 -15.23986 -15.06298 -14.85684 -14.67439 -14.31786 -14.26206 -13.74964 -13.61163 -13.14060 -13.02359 -12.95828 -12.63974 -12.58090 -12.52430 -12.45560 -12.42882 -12.24085 -12.03221 -11.84454 -11.67558 -11.63797 -11.22991 -10.63698 -10.58176 -9.88517 -9.72589 -9.27417 -9.08364 -8.19719 -6.38361 -0.82084 -0.50903 0.84445 1.32514 1.34599 1.35494 1.43193 1.66995 1.95015 2.33280 2.43508 2.95428 3.06068 3.15767 3.29036 3.48567 3.50278 3.76885 3.87870 3.96381 4.07680 4.17950 4.24490 4.30415 4.33234 4.35017 4.47989 4.58345 4.60737 4.64552 4.72715 4.84834 4.88144 5.02641 5.05034 5.14334 5.19980 5.29507 5.31061 5.37566 5.41446 5.48731 5.71065 5.84633 5.96997 6.12572 6.27751 6.37550 6.42668 6.70678 6.81848 6.95693 7.33305 8.82675 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002995 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.096137 B = 9348.225612 C = 9571.278140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.201 3.799 10 N -0.532 5.532 11 C 0.055 3.945 12 C 0.126 3.874 13 N -0.599 5.599 14 C 0.569 3.431 15 O -0.566 6.566 16 C -0.212 4.212 17 C 0.015 3.985 18 C -0.129 4.129 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.070 4.070 22 C -0.127 4.127 23 C 0.139 3.861 24 N -0.521 5.521 25 C 0.365 3.635 26 O -0.489 6.489 27 C 0.119 3.881 28 C 0.049 3.951 29 H 0.266 0.734 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.182 0.818 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.138 0.862 41 H 0.416 0.584 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.015 0.985 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -18.834 11.903 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.069 0.931 9 C 0.074 3.926 10 N -0.255 5.255 11 C -0.075 4.075 12 C 0.004 3.996 13 N -0.331 5.331 14 C 0.357 3.643 15 O -0.445 6.445 16 C -0.219 4.219 17 C -0.010 4.010 18 C -0.131 4.131 19 C -0.099 4.099 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.146 4.146 23 C 0.017 3.983 24 N -0.241 5.241 25 C 0.171 3.829 26 O -0.298 6.298 27 C -0.004 4.004 28 C -0.080 4.080 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.199 0.801 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.181 0.819 40 H 0.155 0.845 41 H 0.277 0.723 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.033 0.967 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.719 -19.036 11.212 26.547 hybrid contribution -0.236 2.556 -0.564 2.628 sum 14.484 -16.480 10.649 24.388 Atomic orbital electron populations 1.70037 1.07316 1.27873 1.50903 1.25708 0.95543 1.02470 0.94575 0.85689 0.78754 0.79777 0.78272 1.20298 1.20367 1.19552 1.21957 0.93108 0.93219 1.51403 0.93147 1.19429 0.91023 0.86207 0.95894 1.62443 1.16849 1.44495 1.01751 1.22215 0.96437 0.95793 0.93023 1.21757 0.91569 0.98102 0.88184 1.48189 1.05964 1.69999 1.08941 1.18118 0.81664 0.76460 0.88057 1.90779 1.73456 1.52678 1.27593 1.20796 0.98145 1.03739 0.99192 1.22243 0.97588 0.92464 0.88749 1.18990 0.96627 0.99651 0.97836 1.21442 1.00644 0.95188 0.92591 1.21443 0.93905 0.99937 0.98144 1.21437 0.96962 0.92328 0.98267 1.21011 0.99954 1.00459 0.93182 1.19150 0.94339 0.90894 0.93868 1.67474 1.30928 1.22042 1.03629 1.19252 0.87295 0.89933 0.86414 1.84701 1.75660 1.21931 1.47529 1.22233 0.96823 0.98766 0.82539 1.22386 0.94128 0.95974 0.95542 0.92525 0.97137 0.96937 0.96927 0.90471 0.89734 0.88495 0.80059 0.81557 0.81557 0.81857 0.84458 0.72322 0.87555 0.88576 0.96659 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 13.29 21.45 0.28 -53.24 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.56 -30.05 7.76 25.60 0.20 -29.85 16 8 H 0.05 2.73 5.88 -2.91 -0.02 2.71 16 9 C 0.20 9.99 5.11 85.56 0.44 10.43 16 10 N -0.53 -20.87 4.83 -898.88 -4.34 -25.21 16 11 C 0.05 2.04 5.25 86.38 0.45 2.49 16 12 C 0.13 3.79 6.61 86.35 0.57 4.36 16 13 N -0.60 -17.09 3.00 -820.78 -2.46 -19.55 16 14 C 0.57 17.84 6.84 86.70 0.59 18.43 16 15 O -0.57 -22.29 16.17 0.45 0.01 -22.28 16 16 C -0.21 -5.68 4.64 -19.92 -0.09 -5.77 16 17 C 0.02 0.29 7.68 23.00 0.18 0.46 16 18 C -0.13 -2.32 5.74 -21.28 -0.12 -2.44 16 19 C -0.08 -0.82 9.77 22.35 0.22 -0.60 16 20 C -0.12 -0.88 9.96 22.05 0.22 -0.66 16 21 C -0.07 -0.68 9.94 22.04 0.22 -0.46 16 22 C -0.13 -2.15 9.97 22.34 0.22 -1.93 16 23 C 0.14 3.17 6.61 40.28 0.27 3.44 16 24 N -0.52 -14.97 10.33 -301.40 -3.11 -18.08 16 25 C 0.36 10.93 7.73 85.50 0.66 11.59 16 26 O -0.49 -15.20 12.70 -82.63 -1.05 -16.25 16 27 C 0.12 2.88 5.71 86.50 0.49 3.37 16 28 C 0.05 1.66 5.17 86.54 0.45 2.11 16 29 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 30 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 31 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.01 0.54 7.11 -2.39 -0.02 0.52 16 33 H 0.08 2.88 8.06 -2.39 -0.02 2.86 16 34 H 0.08 2.68 7.04 -2.38 -0.02 2.66 16 35 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.18 2.16 7.76 -2.91 -0.02 2.14 16 37 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.17 0.14 8.06 -2.91 -0.02 0.11 16 39 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.42 9.67 9.06 -74.06 -0.67 9.00 16 42 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.01 5.53 -2.39 -0.01 2.00 16 44 H 0.02 0.60 6.62 -2.39 -0.02 0.59 16 45 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 Total: -1.00 -76.70 369.31 -2.86 -79.56 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.37 Total: 13.07 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.43 Total: 16.36 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -9.63 Total: -116.08 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.04 Total: -38.53 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.70 -2.86 -79.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.068 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds