Wall clock time and date at job start Tue Mar 31 2020 23:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86805 * 119.99644 * 2 1 4 4 H 1.48503 * 109.46792 * 275.89293 * 3 2 1 5 5 H 1.48500 * 109.47123 * 35.89432 * 3 2 1 6 6 H 1.48497 * 109.47004 * 155.89374 * 3 2 1 7 7 C 1.39012 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99712 * 338.76731 * 7 2 1 9 9 N 1.36884 * 119.99869 * 158.49505 * 7 2 1 10 10 C 1.38219 * 125.61980 * 135.64840 * 9 7 2 11 11 C 1.46883 * 125.43580 * 359.95786 * 10 9 7 12 12 O 1.21675 * 120.00244 * 26.25602 * 11 10 9 13 13 N 1.34774 * 120.00255 * 206.25563 * 11 10 9 14 14 C 1.46925 * 120.62877 * 1.30115 * 13 11 10 15 15 C 1.53631 * 108.54402 * 126.36660 * 14 13 11 16 16 C 1.53038 * 109.23669 * 54.85986 * 15 14 13 17 17 C 1.50700 * 109.44671 * 178.49815 * 16 15 14 18 18 N 1.34779 * 120.00118 * 300.05629 * 17 16 15 19 19 O 1.21283 * 120.00149 * 120.06334 * 17 16 15 20 20 C 1.53043 * 109.53940 * 298.50871 * 16 15 14 21 21 C 1.46928 * 120.63695 * 181.58344 * 13 11 10 22 22 C 1.36126 * 109.12842 * 179.97438 * 10 9 7 23 23 C 1.41702 * 107.74595 * 0.02562 * 22 10 9 24 24 C 1.40018 * 133.35074 * 179.97438 * 23 22 10 25 25 C 1.36576 * 119.83225 * 179.97438 * 24 23 22 26 26 C 1.38853 * 120.60130 * 0.02597 * 25 24 23 27 27 C 1.37845 * 120.63102 * 359.97438 * 26 25 24 28 28 C 1.37842 * 125.62303 * 315.33711 * 9 7 2 29 29 H 0.97001 * 120.00479 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.59125 * 246.20138 * 14 13 11 31 31 H 1.09001 * 109.58418 * 6.63053 * 14 13 11 32 32 H 1.08994 * 109.63537 * 294.86998 * 15 14 13 33 33 H 1.08999 * 109.43088 * 174.72222 * 15 14 13 34 34 H 1.09003 * 109.46382 * 58.53153 * 16 15 14 35 35 H 0.97002 * 119.99483 * 0.02562 * 18 17 16 36 36 H 0.96997 * 120.00417 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.49517 * 301.41731 * 20 16 15 38 38 H 1.08999 * 109.52189 * 181.33949 * 20 16 15 39 39 H 1.09000 * 109.58100 * 353.36939 * 21 13 11 40 40 H 1.08992 * 109.58953 * 113.65090 * 21 13 11 41 41 H 1.07995 * 126.12422 * 179.97438 * 22 10 9 42 42 H 1.07997 * 120.08535 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.70096 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.68757 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.09160 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.3703 2.1183 -1.3927 5 1 1.5126 2.6136 0.8209 6 1 3.6016 1.4076 0.5718 7 6 2.0086 -1.2038 0.0005 8 1 1.5236 -2.1073 0.3397 9 7 3.3059 -1.2452 -0.4340 10 6 4.3425 -1.9145 0.1887 11 6 4.2291 -2.6970 1.4266 12 8 3.1642 -3.1992 1.7335 13 7 5.3046 -2.8588 2.2226 14 6 6.5900 -2.2350 1.8800 15 6 7.0674 -1.4073 3.0831 16 6 7.1142 -2.3020 4.3238 17 6 7.6172 -1.5040 5.4991 18 7 8.8405 -0.9397 5.4566 19 8 6.9213 -1.3695 6.4833 20 6 5.7099 -2.8284 4.6286 21 6 5.2157 -3.6675 3.4461 22 6 5.4854 -1.7326 -0.5280 23 6 5.1699 -0.9200 -1.6452 24 6 5.9260 -0.4124 -2.7087 25 6 5.3260 0.3624 -3.6600 26 6 3.9704 0.6531 -3.5830 27 6 3.2052 0.1649 -2.5456 28 6 3.7928 -0.6311 -1.5680 29 1 -0.4851 0.8400 -0.0004 30 1 7.3226 -3.0091 1.6518 31 1 6.4613 -1.5842 1.0151 32 1 6.3778 -0.5812 3.2561 33 1 8.0635 -1.0141 2.8803 34 1 7.7850 -3.1415 4.1412 35 1 9.3969 -1.0470 4.6693 36 1 9.1641 -0.4257 6.2128 37 1 5.0331 -1.9888 4.7871 38 1 5.7393 -3.4463 5.5261 39 1 4.1800 -3.9622 3.6147 40 1 5.8365 -4.5573 3.3419 41 1 6.4585 -2.1347 -0.2877 42 1 6.9809 -0.6336 -2.7770 43 1 5.9111 0.7524 -4.4797 44 1 3.5111 1.2676 -4.3432 45 1 2.1515 0.3961 -2.4945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609159378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:46 Heat of formation + Delta-G solvation = 4.832414 kcal Electronic energy + Delta-G solvation = -30286.439385 eV Core-core repulsion = 26269.736590 eV Total energy + Delta-G solvation = -4016.702795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01548 -40.17746 -38.91780 -36.79482 -36.03503 -34.01112 -33.78259 -32.69043 -31.54459 -30.93392 -29.26895 -28.36865 -26.23773 -25.03043 -23.46812 -23.06082 -21.68141 -21.10984 -20.20566 -19.92075 -19.03075 -18.04218 -17.63778 -16.84659 -16.31325 -16.03636 -15.73975 -15.34314 -15.02949 -14.91252 -14.53844 -14.25288 -14.12239 -13.86505 -13.61391 -13.46611 -13.15870 -13.08966 -12.91571 -12.56878 -12.48552 -12.25912 -11.91490 -11.63074 -11.44885 -11.26672 -11.04440 -11.01655 -10.78243 -10.70018 -10.44511 -10.22876 -9.97798 -9.92233 -9.90363 -9.43706 -9.21615 -8.69218 -8.39746 -7.39013 -6.97734 -6.88775 -4.51580 1.58543 2.44698 2.46417 2.80201 3.01944 3.08420 3.15671 3.19518 3.32479 3.89597 3.96405 4.29937 4.47028 4.56337 4.64426 4.67611 4.77406 5.02661 5.07084 5.22744 5.27420 5.41048 5.54444 5.60006 5.63322 5.68707 5.78875 5.82121 5.87420 6.00769 6.01557 6.07376 6.19938 6.27372 6.37895 6.53836 6.54250 6.62378 6.78646 6.82601 7.08640 7.17685 7.23714 7.30531 7.56429 7.57269 7.77303 7.90511 8.06277 8.24779 8.68575 8.79386 9.04586 10.15802 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.003988 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.374821 B = 7019.027359 C = 7724.953946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.083 3.917 3 Si 0.867 3.133 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.341 4.341 8 H 0.133 0.867 9 N -0.247 5.247 10 C -0.008 4.008 11 C 0.590 3.410 12 O -0.524 6.524 13 N -0.610 5.610 14 C 0.074 3.926 15 C -0.126 4.126 16 C -0.108 4.108 17 C 0.521 3.479 18 N -0.858 5.858 19 O -0.542 6.542 20 C -0.114 4.114 21 C 0.117 3.883 22 C -0.220 4.220 23 C -0.115 4.115 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.139 4.139 27 C -0.092 4.092 28 C 0.050 3.950 29 H 0.286 0.714 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.401 0.599 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.362 -1.093 2.745 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.131 4.131 3 Si 0.690 3.310 4 H -0.172 1.172 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.469 4.469 8 H 0.150 0.850 9 N 0.092 4.908 10 C -0.125 4.125 11 C 0.380 3.620 12 O -0.400 6.400 13 N -0.346 5.346 14 C -0.048 4.048 15 C -0.165 4.165 16 C -0.129 4.129 17 C 0.307 3.693 18 N -0.421 5.421 19 O -0.418 6.418 20 C -0.153 4.153 21 C -0.006 4.006 22 C -0.246 4.246 23 C -0.120 4.120 24 C -0.104 4.104 25 C -0.172 4.172 26 C -0.159 4.159 27 C -0.111 4.111 28 C -0.063 4.063 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.230 0.770 36 H 0.229 0.771 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.164 0.836 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.536 -1.310 3.632 16.981 hybrid contribution 0.748 1.057 0.124 1.301 sum 17.284 -0.253 3.756 17.689 Atomic orbital electron populations 1.69716 1.06622 1.29622 1.38754 1.25505 0.95282 0.99253 0.93075 0.86956 0.81295 0.82288 0.80444 1.17205 1.20513 1.17941 1.19646 0.83395 0.98650 1.45201 0.85022 1.40207 1.06287 1.31446 1.12879 1.19759 0.88202 1.07733 0.96834 1.17212 0.82914 0.79621 0.82224 1.90793 1.27008 1.48828 1.73352 1.47678 1.10561 1.52240 1.24083 1.22818 0.84814 0.97743 0.99432 1.22043 1.02266 0.98570 0.93616 1.21377 0.99294 0.98718 0.93513 1.20770 0.80976 0.78873 0.88726 1.43909 1.18688 1.56949 1.22590 1.90751 1.56253 1.60376 1.34415 1.21754 0.94381 1.01115 0.98045 1.21524 1.03541 0.92623 0.82905 1.20665 0.96550 1.08552 0.98873 1.17951 0.92954 1.03343 0.97770 1.20108 0.98189 0.98449 0.93694 1.20358 0.94882 1.02219 0.99764 1.20560 0.94154 1.02778 0.98442 1.20212 0.99750 0.97561 0.93608 1.18436 0.93726 1.03666 0.90470 0.90296 0.91396 0.84915 0.90635 0.90489 0.88247 0.77044 0.77060 0.90547 0.90132 0.88479 0.91704 0.83645 0.87248 0.87356 0.87022 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.48 13.95 55.50 0.77 -21.70 16 2 C 0.08 2.24 4.83 -17.47 -0.08 2.16 16 3 Si 0.87 20.65 24.69 -169.99 -4.20 16.45 16 4 H -0.25 -5.56 5.90 56.52 0.33 -5.23 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.34 -9.51 9.35 -15.01 -0.14 -9.65 16 8 H 0.13 4.05 7.19 -52.48 -0.38 3.68 16 9 N -0.25 -6.24 2.36 -56.08 -0.13 -6.38 16 10 C -0.01 -0.17 6.42 -82.25 -0.53 -0.70 16 11 C 0.59 12.54 7.51 -12.76 -0.10 12.44 16 12 O -0.52 -13.07 14.84 5.21 0.08 -12.99 16 13 N -0.61 -9.63 2.97 -173.97 -0.52 -10.15 16 14 C 0.07 0.88 5.30 -3.48 -0.02 0.86 16 15 C -0.13 -1.27 5.28 -26.38 -0.14 -1.41 16 16 C -0.11 -1.05 2.49 -91.73 -0.23 -1.28 16 17 C 0.52 5.70 7.43 -10.98 -0.08 5.62 16 18 N -0.86 -5.71 8.76 31.22 0.27 -5.43 16 19 O -0.54 -8.46 16.82 5.55 0.09 -8.37 16 20 C -0.11 -1.42 4.65 -26.61 -0.12 -1.54 16 21 C 0.12 1.57 6.43 -3.71 -0.02 1.55 16 22 C -0.22 -4.15 8.47 -39.02 -0.33 -4.48 16 23 C -0.12 -2.36 6.16 -106.89 -0.66 -3.02 16 24 C -0.09 -1.48 10.06 -39.51 -0.40 -1.88 16 25 C -0.15 -2.57 9.97 -39.95 -0.40 -2.97 16 26 C -0.14 -2.58 10.02 -39.50 -0.40 -2.98 16 27 C -0.09 -2.03 7.03 -39.41 -0.28 -2.30 16 28 C 0.05 1.17 5.21 -83.83 -0.44 0.73 16 29 H 0.29 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.78 3.46 -51.93 -0.18 1.60 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.51 7.52 -51.93 -0.39 0.12 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 1.46 8.22 -40.82 -0.34 1.12 16 36 H 0.40 2.34 8.93 -40.82 -0.36 1.98 16 37 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 38 H 0.08 0.93 8.07 -51.93 -0.42 0.52 16 39 H 0.10 1.52 7.00 -51.93 -0.36 1.15 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.15 2.10 5.69 -52.49 -0.30 1.80 16 42 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.12 2.69 6.22 -52.49 -0.33 2.36 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -34.36 356.59 -8.25 -42.62 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.64 Total: 9.43 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -4.36 Total: -8.85 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.40 Total: -43.66 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.17 Total: -21.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.20 Total: 16.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.36 -8.25 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.448 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds