Wall clock time and date at job start Tue Mar 31 2020 23:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86805 * 119.99644 * 2 1 4 4 H 1.48503 * 109.46792 * 275.89293 * 3 2 1 5 5 H 1.48500 * 109.47123 * 35.89432 * 3 2 1 6 6 H 1.48497 * 109.47004 * 155.89374 * 3 2 1 7 7 C 1.39012 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99712 * 338.76731 * 7 2 1 9 9 N 1.36884 * 119.99869 * 158.49505 * 7 2 1 10 10 C 1.38219 * 125.61980 * 135.64840 * 9 7 2 11 11 C 1.46883 * 125.43580 * 359.95786 * 10 9 7 12 12 O 1.21675 * 120.00244 * 26.25602 * 11 10 9 13 13 N 1.34774 * 120.00255 * 206.25563 * 11 10 9 14 14 C 1.46925 * 120.62877 * 1.30115 * 13 11 10 15 15 C 1.53631 * 108.54402 * 126.36660 * 14 13 11 16 16 C 1.53038 * 109.23669 * 54.85986 * 15 14 13 17 17 C 1.50700 * 109.44671 * 178.49815 * 16 15 14 18 18 N 1.34779 * 120.00118 * 300.05629 * 17 16 15 19 19 O 1.21283 * 120.00149 * 120.06334 * 17 16 15 20 20 C 1.53043 * 109.53940 * 298.50871 * 16 15 14 21 21 C 1.46928 * 120.63695 * 181.58344 * 13 11 10 22 22 C 1.36126 * 109.12842 * 179.97438 * 10 9 7 23 23 C 1.41702 * 107.74595 * 0.02562 * 22 10 9 24 24 C 1.40018 * 133.35074 * 179.97438 * 23 22 10 25 25 C 1.36576 * 119.83225 * 179.97438 * 24 23 22 26 26 C 1.38853 * 120.60130 * 0.02597 * 25 24 23 27 27 C 1.37845 * 120.63102 * 359.97438 * 26 25 24 28 28 C 1.37842 * 125.62303 * 315.33711 * 9 7 2 29 29 H 0.97001 * 120.00479 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.59125 * 246.20138 * 14 13 11 31 31 H 1.09001 * 109.58418 * 6.63053 * 14 13 11 32 32 H 1.08994 * 109.63537 * 294.86998 * 15 14 13 33 33 H 1.08999 * 109.43088 * 174.72222 * 15 14 13 34 34 H 1.09003 * 109.46382 * 58.53153 * 16 15 14 35 35 H 0.97002 * 119.99483 * 0.02562 * 18 17 16 36 36 H 0.96997 * 120.00417 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.49517 * 301.41731 * 20 16 15 38 38 H 1.08999 * 109.52189 * 181.33949 * 20 16 15 39 39 H 1.09000 * 109.58100 * 353.36939 * 21 13 11 40 40 H 1.08992 * 109.58953 * 113.65090 * 21 13 11 41 41 H 1.07995 * 126.12422 * 179.97438 * 22 10 9 42 42 H 1.07997 * 120.08535 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.70096 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.68757 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.09160 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.3703 2.1183 -1.3927 5 1 1.5126 2.6136 0.8209 6 1 3.6016 1.4076 0.5718 7 6 2.0086 -1.2038 0.0005 8 1 1.5236 -2.1073 0.3397 9 7 3.3059 -1.2452 -0.4340 10 6 4.3425 -1.9145 0.1887 11 6 4.2291 -2.6970 1.4266 12 8 3.1642 -3.1992 1.7335 13 7 5.3046 -2.8588 2.2226 14 6 6.5900 -2.2350 1.8800 15 6 7.0674 -1.4073 3.0831 16 6 7.1142 -2.3020 4.3238 17 6 7.6172 -1.5040 5.4991 18 7 8.8405 -0.9397 5.4566 19 8 6.9213 -1.3695 6.4833 20 6 5.7099 -2.8284 4.6286 21 6 5.2157 -3.6675 3.4461 22 6 5.4854 -1.7326 -0.5280 23 6 5.1699 -0.9200 -1.6452 24 6 5.9260 -0.4124 -2.7087 25 6 5.3260 0.3624 -3.6600 26 6 3.9704 0.6531 -3.5830 27 6 3.2052 0.1649 -2.5456 28 6 3.7928 -0.6311 -1.5680 29 1 -0.4851 0.8400 -0.0004 30 1 7.3226 -3.0091 1.6518 31 1 6.4613 -1.5842 1.0151 32 1 6.3778 -0.5812 3.2561 33 1 8.0635 -1.0141 2.8803 34 1 7.7850 -3.1415 4.1412 35 1 9.3969 -1.0470 4.6693 36 1 9.1641 -0.4257 6.2128 37 1 5.0331 -1.9888 4.7871 38 1 5.7393 -3.4463 5.5261 39 1 4.1800 -3.9622 3.6147 40 1 5.8365 -4.5573 3.3419 41 1 6.4585 -2.1347 -0.2877 42 1 6.9809 -0.6336 -2.7770 43 1 5.9111 0.7524 -4.4797 44 1 3.5111 1.2676 -4.3432 45 1 2.1515 0.3961 -2.4945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609159378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:46 Heat of formation + Delta-G solvation = -21.972843 kcal Electronic energy + Delta-G solvation = -30287.601748 eV Core-core repulsion = 26269.736590 eV Total energy + Delta-G solvation = -4017.865158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.57347 -41.22929 -40.21405 -38.11450 -37.56577 -35.59224 -34.82494 -33.99482 -33.02392 -32.07752 -30.82231 -29.85719 -27.38173 -26.85159 -24.75385 -24.17167 -22.95908 -22.54058 -21.53270 -21.15234 -20.38478 -19.68795 -18.46799 -17.83085 -17.62179 -17.49328 -17.43864 -16.69829 -16.39387 -16.19243 -15.92962 -15.52859 -15.43269 -15.19435 -14.96981 -14.73570 -14.69100 -14.45937 -14.36231 -14.07701 -13.82550 -13.72699 -13.24618 -13.01305 -12.86891 -12.73798 -12.44841 -12.31980 -12.25038 -11.97806 -11.73078 -11.62854 -11.49916 -11.25236 -11.00100 -10.81100 -10.61947 -10.33074 -9.68838 -9.00728 -8.86554 -8.55821 -6.54809 0.05236 0.93630 1.07722 1.11666 1.24614 1.32650 1.63789 1.77698 1.96146 2.30192 2.60750 2.67094 2.83245 3.18788 3.53673 3.76054 3.76726 3.89780 4.05166 4.08429 4.30578 4.32349 4.35931 4.40890 4.46042 4.58612 4.65888 4.73928 4.77231 4.80895 4.84079 4.88580 5.01151 5.06362 5.09905 5.11241 5.30360 5.31581 5.39409 5.62219 5.71843 5.83096 5.86706 5.93036 6.07034 6.12855 6.39241 6.43840 6.50682 6.82647 7.16189 7.26055 7.38934 8.24249 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.003988 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.374821 B = 7019.027359 C = 7724.953946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.047 3.953 3 Si 0.926 3.074 4 H -0.225 1.225 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.361 4.361 8 H 0.074 0.926 9 N -0.290 5.290 10 C -0.039 4.039 11 C 0.577 3.423 12 O -0.585 6.585 13 N -0.598 5.598 14 C 0.066 3.934 15 C -0.120 4.120 16 C -0.099 4.099 17 C 0.518 3.482 18 N -0.833 5.833 19 O -0.600 6.600 20 C -0.109 4.109 21 C 0.116 3.884 22 C -0.173 4.173 23 C -0.136 4.136 24 C -0.064 4.064 25 C -0.154 4.154 26 C -0.113 4.113 27 C -0.148 4.148 28 C 0.034 3.966 29 H 0.291 0.709 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.037 0.963 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.421 0.579 36 H 0.406 0.594 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.203 0.797 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.140 0.860 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.868 -0.357 0.458 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.747 3.253 4 H -0.148 1.148 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.092 0.908 9 N 0.045 4.955 10 C -0.153 4.153 11 C 0.367 3.633 12 O -0.465 6.465 13 N -0.331 5.331 14 C -0.054 4.054 15 C -0.159 4.159 16 C -0.120 4.120 17 C 0.304 3.696 18 N -0.397 5.397 19 O -0.481 6.481 20 C -0.148 4.148 21 C -0.006 4.006 22 C -0.199 4.199 23 C -0.141 4.141 24 C -0.083 4.083 25 C -0.173 4.173 26 C -0.133 4.133 27 C -0.168 4.168 28 C -0.078 4.078 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.253 0.747 36 H 0.237 0.763 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.219 0.781 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.158 0.842 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.153 -0.565 1.331 24.196 hybrid contribution -1.219 0.731 0.704 1.586 sum 22.934 0.166 2.035 23.025 Atomic orbital electron populations 1.69783 1.07862 1.30431 1.42321 1.26077 0.95773 1.01702 0.92663 0.86105 0.78980 0.78890 0.81309 1.14842 1.20033 1.19609 1.19018 0.85707 0.97044 1.47105 0.90827 1.40160 1.05797 1.34730 1.14843 1.20343 0.89263 1.07594 0.98140 1.17517 0.83526 0.79377 0.82889 1.90762 1.29631 1.51389 1.74725 1.47837 1.10676 1.51292 1.23308 1.23162 0.83474 0.99106 0.99658 1.22039 1.03933 0.97126 0.92779 1.21355 0.97832 0.99932 0.92858 1.20954 0.81647 0.78821 0.88171 1.43700 1.17267 1.55185 1.23534 1.90744 1.58133 1.62625 1.36603 1.21645 0.95788 0.99581 0.97809 1.21684 1.02591 0.93967 0.82364 1.21346 0.97216 1.05235 0.96146 1.18479 0.91793 1.04363 0.99477 1.20689 1.00270 0.95933 0.91375 1.20914 0.94050 1.01393 1.00895 1.21081 0.95184 1.00299 0.96721 1.20285 0.99306 1.01083 0.96111 1.19020 0.95548 1.03163 0.90111 0.89887 0.86015 0.86276 0.94403 0.85442 0.83654 0.74718 0.76316 0.94914 0.89405 0.92105 0.87314 0.78095 0.82090 0.82472 0.84229 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.90 13.95 21.67 0.30 -52.60 16 2 C 0.05 2.76 4.83 84.95 0.41 3.17 16 3 Si 0.93 45.63 24.69 68.60 1.69 47.32 16 4 H -0.23 -10.10 5.90 99.48 0.59 -9.51 16 5 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.27 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.36 -22.41 9.35 84.09 0.79 -21.62 16 8 H 0.07 5.24 7.19 -2.91 -0.02 5.21 16 9 N -0.29 -15.61 2.36 -331.34 -0.78 -16.39 16 10 C -0.04 -1.77 6.42 39.91 0.26 -1.52 16 11 C 0.58 25.83 7.51 86.51 0.65 26.48 16 12 O -0.58 -32.38 14.84 -4.27 -0.06 -32.44 16 13 N -0.60 -18.41 2.97 -822.54 -2.44 -20.84 16 14 C 0.07 1.25 5.30 86.51 0.46 1.71 16 15 C -0.12 -1.91 5.28 30.82 0.16 -1.74 16 16 C -0.10 -1.57 2.49 -11.51 -0.03 -1.60 16 17 C 0.52 10.02 7.43 87.66 0.65 10.67 16 18 N -0.83 -7.67 8.76 -173.53 -1.52 -9.19 16 19 O -0.60 -18.64 16.82 -3.04 -0.05 -18.69 16 20 C -0.11 -2.70 4.65 30.67 0.14 -2.55 16 21 C 0.12 3.08 6.43 86.36 0.56 3.64 16 22 C -0.17 -5.98 8.47 22.63 0.19 -5.79 16 23 C -0.14 -5.11 6.16 -21.34 -0.13 -5.24 16 24 C -0.06 -1.80 10.06 22.31 0.22 -1.57 16 25 C -0.15 -4.17 9.97 22.03 0.22 -3.95 16 26 C -0.11 -3.80 10.02 22.32 0.22 -3.58 16 27 C -0.15 -6.54 7.03 22.38 0.16 -6.39 16 28 C 0.03 1.60 5.21 39.06 0.20 1.80 16 29 H 0.29 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 2.59 3.46 -2.39 -0.01 2.59 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.79 7.52 -2.39 -0.02 0.77 16 34 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.42 0.57 8.22 -92.71 -0.76 -0.19 16 36 H 0.41 3.39 8.93 -92.71 -0.83 2.56 16 37 H 0.03 1.07 8.13 -2.39 -0.02 1.06 16 38 H 0.09 2.03 8.07 -2.39 -0.02 2.01 16 39 H 0.06 2.08 7.00 -2.39 -0.02 2.06 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.20 4.46 5.69 -2.91 -0.02 4.45 16 42 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.09 4.37 6.22 -2.91 -0.02 4.35 16 Total: -1.00 -92.70 356.59 1.63 -91.07 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.65 Total: 19.85 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 5.13 Total: -8.09 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.44 Total: -99.02 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.11 Total: -51.13 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.69 Total: 47.32 kcal Total: -92.70 1.63 -91.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.094 kcal (2) G-P(sol) polarization free energy of solvation -92.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds