Wall clock time and date at job start Wed Apr 1 2020 00:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99717 * 2 1 4 4 H 1.48499 * 109.47271 * 272.94283 * 3 2 1 5 5 H 1.48505 * 109.47398 * 32.94339 * 3 2 1 6 6 H 1.48499 * 109.47205 * 152.94139 * 3 2 1 7 7 C 1.38808 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00259 * 339.34389 * 7 2 1 9 9 N 1.36934 * 120.00173 * 159.34771 * 7 2 1 10 10 C 1.46921 * 120.62776 * 332.62841 * 9 7 2 11 11 C 1.53200 * 108.77740 * 233.58864 * 10 9 7 12 12 C 1.53038 * 109.30792 * 305.36544 * 11 10 9 13 13 O 1.45201 * 109.45712 * 181.38520 * 12 11 10 14 14 C 1.34781 * 117.00110 * 150.00232 * 13 12 11 15 15 O 1.21540 * 119.99801 * 359.97438 * 14 13 12 16 16 C 1.47136 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.38048 * 126.82043 * 0.02562 * 16 14 13 18 18 N 1.34117 * 107.87742 * 179.74275 * 17 16 14 19 19 H 0.96998 * 125.15432 * 180.26084 * 18 17 16 20 20 N 1.39773 * 109.69846 * 0.24118 * 18 17 16 21 21 C 1.31359 * 109.09430 * 0.02562 * 20 18 17 22 22 C 1.48289 * 126.51334 * 180.02562 * 21 20 18 23 23 C 1.39384 * 120.12047 * 144.69764 * 22 21 20 24 24 C 1.38013 * 119.86750 * 179.77123 * 23 22 21 25 25 C 1.38328 * 120.12235 * 0.50657 * 24 23 22 26 26 C 1.38324 * 120.26078 * 359.74713 * 25 24 23 27 27 C 1.38009 * 120.12236 * 359.97438 * 26 25 24 28 28 C 1.53040 * 109.54068 * 61.36566 * 12 11 10 29 29 C 1.46928 * 120.63297 * 152.60570 * 9 7 2 30 30 H 0.96993 * 120.00118 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58703 * 113.79994 * 10 9 7 32 32 H 1.09002 * 109.71073 * 353.44293 * 10 9 7 33 33 H 1.08997 * 109.49576 * 185.41563 * 11 10 9 34 34 H 1.08996 * 109.52485 * 65.33110 * 11 10 9 35 35 H 1.09007 * 109.46125 * 301.35583 * 12 11 10 36 36 H 1.07996 * 126.06035 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.06807 * 0.02562 * 23 22 21 38 38 H 1.07994 * 119.93698 * 180.25803 * 24 23 22 39 39 H 1.08006 * 119.87122 * 179.76885 * 25 24 23 40 40 H 1.07996 * 119.93776 * 180.02562 * 26 25 24 41 41 H 1.07998 * 120.06391 * 180.02562 * 27 26 25 42 42 H 1.09001 * 109.49684 * 58.58086 * 28 12 11 43 43 H 1.09001 * 109.49698 * 178.68268 * 28 12 11 44 44 H 1.08997 * 109.58933 * 246.20197 * 29 9 7 45 45 H 1.09000 * 109.58682 * 6.48518 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6339 0.7614 6 1 3.5774 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3309 9 7 3.3136 -1.2404 -0.4177 10 6 3.8173 -0.2595 -1.3886 11 6 4.4622 -1.0098 -2.5583 12 6 5.5290 -1.9658 -2.0196 13 8 6.1652 -2.6548 -3.1281 14 6 7.4512 -3.0228 -2.9629 15 8 8.0253 -2.7741 -1.9209 16 6 8.1604 -3.7245 -4.0443 17 6 7.6493 -4.0745 -5.2780 18 7 8.6210 -4.6920 -5.9660 19 1 8.5328 -5.0395 -6.8673 20 7 9.7801 -4.7587 -5.1878 21 6 9.5496 -4.1938 -4.0244 22 6 10.5132 -4.0514 -2.9064 23 6 10.4870 -2.9142 -2.1009 24 6 11.3831 -2.7892 -1.0587 25 6 12.3129 -3.7851 -0.8195 26 6 12.3470 -4.9135 -1.6189 27 6 11.4520 -5.0518 -2.6603 28 6 4.8753 -2.9907 -1.0899 29 6 4.2351 -2.2628 0.0964 30 1 -0.4850 0.8400 -0.0004 31 1 4.5597 0.3797 -0.9107 32 1 2.9923 0.3506 -1.7565 33 1 4.9247 -0.2946 -3.2385 34 1 3.7000 -1.5782 -3.0911 35 1 6.2780 -1.3994 -1.4661 36 1 6.6465 -3.8810 -5.6288 37 1 9.7641 -2.1342 -2.2893 38 1 11.3611 -1.9105 -0.4314 39 1 13.0148 -3.6814 -0.0052 40 1 13.0748 -5.6880 -1.4272 41 1 11.4793 -5.9334 -3.2835 42 1 4.1088 -3.5405 -1.6361 43 1 5.6319 -3.6855 -0.7251 44 1 5.0115 -1.7871 0.6954 45 1 3.6846 -2.9751 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766878058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:37 Heat of formation + Delta-G solvation = 43.376937 kcal Electronic energy + Delta-G solvation = -29159.809413 eV Core-core repulsion = 25144.778034 eV Total energy + Delta-G solvation = -4015.031379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53336 -40.00195 -38.99005 -37.64054 -35.89241 -33.13240 -32.72983 -31.22324 -30.90544 -30.49977 -30.22459 -29.94405 -25.42403 -23.88219 -23.70651 -22.97517 -22.62290 -21.81470 -20.68378 -19.96418 -19.62086 -18.56538 -17.32224 -16.94635 -16.91755 -16.03361 -15.83525 -15.47008 -15.15218 -14.97179 -14.75427 -14.20744 -14.03851 -13.83231 -13.74599 -13.51197 -13.29001 -13.03026 -12.86938 -12.70719 -12.42969 -12.06252 -11.86279 -11.65400 -11.42812 -11.30757 -11.01085 -10.86792 -10.75535 -10.51251 -10.38580 -10.30263 -10.11559 -9.85794 -9.73075 -9.42501 -9.25637 -8.95940 -8.67265 -8.60945 -7.04088 -5.97446 -3.33973 0.78101 1.10914 1.36574 2.00606 2.23519 2.87502 3.08638 3.29312 3.47381 3.50124 3.73515 4.01233 4.25914 4.50277 4.75655 4.85428 4.88463 4.90434 5.02853 5.07796 5.10542 5.15110 5.22952 5.34984 5.37853 5.50771 5.56202 5.68232 5.76913 5.90218 5.97653 5.98421 6.11480 6.17513 6.25636 6.33592 6.35778 6.40837 6.46054 6.53500 6.58507 6.64298 6.68398 6.72908 6.86311 6.94814 7.09074 7.92166 7.98352 8.30183 8.90010 9.68536 10.05159 11.18401 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.002709 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.279188 B =10332.174005 C =11304.165107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.261 4.261 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.129 4.129 12 C 0.102 3.898 13 O -0.355 6.355 14 C 0.537 3.463 15 O -0.505 6.505 16 C -0.273 4.273 17 C 0.140 3.860 18 N -0.464 5.464 19 H 0.446 0.554 20 N -0.285 5.285 21 C 0.182 3.818 22 C -0.037 4.037 23 C -0.053 4.053 24 C -0.128 4.128 25 C -0.104 4.104 26 C -0.135 4.135 27 C -0.086 4.086 28 C -0.148 4.148 29 C 0.152 3.848 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.199 0.801 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.284 -9.253 -11.150 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.105 0.895 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.168 4.168 12 C 0.048 3.952 13 O -0.272 6.272 14 C 0.382 3.618 15 O -0.395 6.395 16 C -0.286 4.286 17 C -0.011 4.011 18 N -0.169 5.169 19 H 0.291 0.709 20 N -0.105 5.105 21 C 0.013 3.987 22 C -0.039 4.039 23 C -0.072 4.072 24 C -0.147 4.147 25 C -0.123 4.123 26 C -0.153 4.153 27 C -0.105 4.105 28 C -0.187 4.187 29 C 0.026 3.974 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.216 0.784 37 H 0.160 0.840 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.068 -9.676 -11.546 27.551 hybrid contribution -0.397 1.140 -0.017 1.207 sum 22.671 -8.536 -11.563 26.843 Atomic orbital electron populations 1.69834 1.05721 1.26605 1.52823 1.25283 0.95241 0.97575 0.99435 0.86987 0.80170 0.84704 0.77093 1.21529 1.23027 1.19439 1.18930 0.84849 0.94880 1.40257 0.89536 1.44426 1.08783 1.33320 1.46424 1.21365 0.97382 0.92038 0.88917 1.22236 0.97024 0.97687 0.99878 1.22838 0.93804 0.93215 0.85363 1.86579 1.25180 1.69550 1.45880 1.19815 0.80442 0.75865 0.85650 1.90803 1.66968 1.53252 1.28446 1.20458 0.94785 1.17232 0.96113 1.23287 0.95229 0.91233 0.91384 1.45993 1.08195 1.46338 1.16353 0.70889 1.77383 1.05006 1.24498 1.03633 1.21859 0.91119 0.93701 0.91978 1.17665 0.95423 0.96556 0.94251 1.21614 0.95869 0.97048 0.92660 1.21114 0.95774 0.99617 0.98148 1.21288 0.98240 0.93872 0.98899 1.20995 0.99747 0.98423 0.96183 1.21149 0.94008 0.98044 0.97306 1.22456 0.99971 0.98013 0.98261 1.20884 0.92401 0.91421 0.92694 0.92713 0.95375 0.90115 0.91938 0.90509 0.90086 0.78380 0.83958 0.85656 0.86042 0.85881 0.85865 0.90993 0.92073 0.95525 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 13.97 55.49 0.78 -26.72 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.01 24.35 -169.99 -4.14 17.88 16 4 H -0.29 -6.87 6.62 56.52 0.37 -6.49 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.64 6.64 56.52 0.38 -6.26 16 7 C -0.26 -7.21 10.03 -15.06 -0.15 -7.36 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 N -0.61 -14.25 2.77 -172.32 -0.48 -14.73 16 10 C 0.13 2.76 4.20 -3.71 -0.02 2.74 16 11 C -0.13 -2.26 5.74 -26.61 -0.15 -2.41 16 12 C 0.10 1.70 2.42 -26.69 -0.06 1.64 16 13 O -0.36 -5.30 9.72 -40.71 -0.40 -5.70 16 14 C 0.54 7.85 7.79 34.34 0.27 8.12 16 15 O -0.50 -8.27 11.68 -19.30 -0.23 -8.49 16 16 C -0.27 -3.35 6.26 -102.97 -0.64 -3.99 16 17 C 0.14 1.17 11.84 -16.62 -0.20 0.97 16 18 N -0.46 -3.49 7.20 30.82 0.22 -3.27 16 19 H 0.45 1.57 8.96 -182.85 -1.64 -0.07 16 20 N -0.28 -3.17 12.63 34.58 0.44 -2.74 16 21 C 0.18 2.29 6.94 -80.55 -0.56 1.73 16 22 C -0.04 -0.47 5.74 -104.91 -0.60 -1.07 16 23 C -0.05 -0.68 7.78 -39.24 -0.31 -0.98 16 24 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 25 C -0.10 -1.00 10.04 -39.52 -0.40 -1.40 16 26 C -0.14 -1.29 10.03 -39.63 -0.40 -1.69 16 27 C -0.09 -0.94 9.76 -39.24 -0.38 -1.32 16 28 C -0.15 -2.55 5.72 -26.61 -0.15 -2.71 16 29 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 32 H 0.08 1.87 4.50 -51.93 -0.23 1.64 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.41 7.16 -51.93 -0.37 1.04 16 36 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.14 1.98 5.62 -52.49 -0.30 1.68 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -33.74 367.39 -9.69 -43.43 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.16 Total: 0.77 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -4.27 Total: -5.97 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.96 Total: -47.46 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.62 Total: -14.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.74 -9.69 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766878058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.810 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds