Wall clock time and date at job start Wed Apr 1 2020 00:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99717 * 2 1 4 4 H 1.48499 * 109.47271 * 272.94283 * 3 2 1 5 5 H 1.48505 * 109.47398 * 32.94339 * 3 2 1 6 6 H 1.48499 * 109.47205 * 152.94139 * 3 2 1 7 7 C 1.38808 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00259 * 339.34389 * 7 2 1 9 9 N 1.36934 * 120.00173 * 159.34771 * 7 2 1 10 10 C 1.46921 * 120.62776 * 332.62841 * 9 7 2 11 11 C 1.53200 * 108.77740 * 233.58864 * 10 9 7 12 12 C 1.53038 * 109.30792 * 305.36544 * 11 10 9 13 13 O 1.45201 * 109.45712 * 181.38520 * 12 11 10 14 14 C 1.34781 * 117.00110 * 150.00232 * 13 12 11 15 15 O 1.21540 * 119.99801 * 359.97438 * 14 13 12 16 16 C 1.47136 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.38048 * 126.82043 * 0.02562 * 16 14 13 18 18 N 1.34117 * 107.87742 * 179.74275 * 17 16 14 19 19 H 0.96998 * 125.15432 * 180.26084 * 18 17 16 20 20 N 1.39773 * 109.69846 * 0.24118 * 18 17 16 21 21 C 1.31359 * 109.09430 * 0.02562 * 20 18 17 22 22 C 1.48289 * 126.51334 * 180.02562 * 21 20 18 23 23 C 1.39384 * 120.12047 * 144.69764 * 22 21 20 24 24 C 1.38013 * 119.86750 * 179.77123 * 23 22 21 25 25 C 1.38328 * 120.12235 * 0.50657 * 24 23 22 26 26 C 1.38324 * 120.26078 * 359.74713 * 25 24 23 27 27 C 1.38009 * 120.12236 * 359.97438 * 26 25 24 28 28 C 1.53040 * 109.54068 * 61.36566 * 12 11 10 29 29 C 1.46928 * 120.63297 * 152.60570 * 9 7 2 30 30 H 0.96993 * 120.00118 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58703 * 113.79994 * 10 9 7 32 32 H 1.09002 * 109.71073 * 353.44293 * 10 9 7 33 33 H 1.08997 * 109.49576 * 185.41563 * 11 10 9 34 34 H 1.08996 * 109.52485 * 65.33110 * 11 10 9 35 35 H 1.09007 * 109.46125 * 301.35583 * 12 11 10 36 36 H 1.07996 * 126.06035 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.06807 * 0.02562 * 23 22 21 38 38 H 1.07994 * 119.93698 * 180.25803 * 24 23 22 39 39 H 1.08006 * 119.87122 * 179.76885 * 25 24 23 40 40 H 1.07996 * 119.93776 * 180.02562 * 26 25 24 41 41 H 1.07998 * 120.06391 * 180.02562 * 27 26 25 42 42 H 1.09001 * 109.49684 * 58.58086 * 28 12 11 43 43 H 1.09001 * 109.49698 * 178.68268 * 28 12 11 44 44 H 1.08997 * 109.58933 * 246.20197 * 29 9 7 45 45 H 1.09000 * 109.58682 * 6.48518 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6339 0.7614 6 1 3.5774 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3309 9 7 3.3136 -1.2404 -0.4177 10 6 3.8173 -0.2595 -1.3886 11 6 4.4622 -1.0098 -2.5583 12 6 5.5290 -1.9658 -2.0196 13 8 6.1652 -2.6548 -3.1281 14 6 7.4512 -3.0228 -2.9629 15 8 8.0253 -2.7741 -1.9209 16 6 8.1604 -3.7245 -4.0443 17 6 7.6493 -4.0745 -5.2780 18 7 8.6210 -4.6920 -5.9660 19 1 8.5328 -5.0395 -6.8673 20 7 9.7801 -4.7587 -5.1878 21 6 9.5496 -4.1938 -4.0244 22 6 10.5132 -4.0514 -2.9064 23 6 10.4870 -2.9142 -2.1009 24 6 11.3831 -2.7892 -1.0587 25 6 12.3129 -3.7851 -0.8195 26 6 12.3470 -4.9135 -1.6189 27 6 11.4520 -5.0518 -2.6603 28 6 4.8753 -2.9907 -1.0899 29 6 4.2351 -2.2628 0.0964 30 1 -0.4850 0.8400 -0.0004 31 1 4.5597 0.3797 -0.9107 32 1 2.9923 0.3506 -1.7565 33 1 4.9247 -0.2946 -3.2385 34 1 3.7000 -1.5782 -3.0911 35 1 6.2780 -1.3994 -1.4661 36 1 6.6465 -3.8810 -5.6288 37 1 9.7641 -2.1342 -2.2893 38 1 11.3611 -1.9105 -0.4314 39 1 13.0148 -3.6814 -0.0052 40 1 13.0748 -5.6880 -1.4272 41 1 11.4793 -5.9334 -3.2835 42 1 4.1088 -3.5405 -1.6361 43 1 5.6319 -3.6855 -0.7251 44 1 5.0115 -1.7871 0.6954 45 1 3.6846 -2.9751 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766878058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:36 Heat of formation + Delta-G solvation = 22.930959 kcal Electronic energy + Delta-G solvation = -29160.696017 eV Core-core repulsion = 25144.778034 eV Total energy + Delta-G solvation = -4015.917983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34947 -41.15747 -39.78403 -39.15044 -37.19952 -34.61114 -33.90374 -32.58025 -32.04630 -31.89239 -31.37120 -30.75319 -27.12756 -25.13833 -24.52212 -24.39347 -23.62726 -23.26251 -21.63289 -21.15894 -20.81691 -19.44539 -18.82772 -18.42947 -17.72386 -17.29767 -17.03271 -16.71709 -16.26798 -15.99157 -15.91080 -15.55466 -15.37476 -15.16258 -14.82687 -14.65172 -14.47807 -14.30206 -14.13201 -13.97251 -13.85605 -13.53009 -13.51186 -12.73954 -12.57513 -12.42211 -12.38138 -12.18709 -12.16961 -12.00754 -11.86796 -11.61794 -11.43594 -11.35941 -11.14335 -11.02320 -10.71739 -10.07916 -9.77832 -9.42153 -9.00098 -8.16174 -5.49581 -0.06023 0.33379 0.55137 1.15015 1.30617 1.43630 1.48168 1.52818 1.86042 2.09783 2.41875 2.92518 3.03959 3.20647 3.30669 3.50287 3.73773 3.83487 3.98325 4.04322 4.13242 4.16475 4.22761 4.25208 4.28766 4.36380 4.42243 4.57393 4.58932 4.71790 4.73136 4.79051 4.88233 4.91499 4.96915 5.00889 5.12245 5.14692 5.18031 5.30901 5.53740 5.59646 5.61640 5.69002 5.85745 6.08128 6.12679 6.13604 6.33698 6.87840 6.88801 7.59597 7.99619 9.03474 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.002709 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.279188 B =10332.174005 C =11304.165107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.032 4.032 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.311 1.311 6 H -0.263 1.263 7 C -0.251 4.251 8 H 0.054 0.946 9 N -0.620 5.620 10 C 0.122 3.878 11 C -0.118 4.118 12 C 0.108 3.892 13 O -0.347 6.347 14 C 0.536 3.464 15 O -0.528 6.528 16 C -0.311 4.311 17 C 0.171 3.829 18 N -0.443 5.443 19 H 0.465 0.535 20 N -0.300 5.300 21 C 0.169 3.831 22 C -0.058 4.058 23 C -0.073 4.073 24 C -0.140 4.140 25 C -0.104 4.104 26 C -0.133 4.133 27 C -0.095 4.095 28 C -0.136 4.136 29 C 0.149 3.851 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.125 0.875 38 H 0.135 0.865 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.131 0.869 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.764 -9.736 -12.803 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.227 4.227 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.187 1.187 7 C -0.380 4.380 8 H 0.072 0.928 9 N -0.344 5.344 10 C -0.003 4.003 11 C -0.157 4.157 12 C 0.054 3.946 13 O -0.264 6.264 14 C 0.383 3.617 15 O -0.419 6.419 16 C -0.324 4.324 17 C 0.018 3.982 18 N -0.150 5.150 19 H 0.315 0.685 20 N -0.121 5.121 21 C 0.001 3.999 22 C -0.060 4.060 23 C -0.093 4.093 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.151 4.151 27 C -0.114 4.114 28 C -0.175 4.175 29 C 0.024 3.976 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.253 0.747 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.149 0.851 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.613 -10.192 -13.252 30.586 hybrid contribution -1.101 1.141 0.444 1.647 sum 24.512 -9.051 -12.808 29.099 Atomic orbital electron populations 1.69959 1.07390 1.27308 1.55425 1.25889 0.95825 1.00889 1.00125 0.85972 0.78723 0.80243 0.77948 1.19398 1.23985 1.18707 1.18859 0.86522 0.93732 1.38935 0.92813 1.44534 1.07920 1.34523 1.47450 1.21412 0.97063 0.92024 0.89772 1.22028 0.97071 0.98111 0.98505 1.22552 0.93495 0.92880 0.85686 1.86563 1.25625 1.69529 1.44692 1.20196 0.79958 0.75513 0.86064 1.90802 1.67210 1.54314 1.29615 1.20440 0.95099 1.19612 0.97229 1.23766 0.96186 0.88550 0.89678 1.46043 1.07083 1.45036 1.16818 0.68540 1.77328 1.06519 1.24730 1.03533 1.21968 0.91413 0.94153 0.92400 1.17896 0.96276 0.97026 0.94775 1.21557 0.96569 0.97150 0.93982 1.21344 0.95937 1.00630 0.97903 1.21628 0.98005 0.93224 0.99409 1.21373 0.99550 0.98966 0.95201 1.21352 0.94079 0.97988 0.98025 1.22271 0.99889 0.97982 0.97328 1.20993 0.91946 0.90759 0.93894 0.92852 0.94551 0.91893 0.89096 0.90893 0.90566 0.74671 0.85742 0.84710 0.83254 0.83026 0.85081 0.91413 0.91024 0.94714 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.97 21.65 0.30 -59.16 16 2 C -0.03 -1.87 5.23 84.86 0.44 -1.43 16 3 Si 0.94 45.70 24.35 68.60 1.67 47.37 16 4 H -0.27 -12.01 6.62 99.48 0.66 -11.35 16 5 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 6 H -0.26 -12.28 6.64 99.48 0.66 -11.62 16 7 C -0.25 -14.14 10.03 84.03 0.84 -13.30 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.62 -28.97 2.77 -699.08 -1.94 -30.90 16 10 C 0.12 5.04 4.20 86.37 0.36 5.40 16 11 C -0.12 -3.87 5.74 30.67 0.18 -3.70 16 12 C 0.11 3.43 2.42 30.62 0.07 3.50 16 13 O -0.35 -9.65 9.72 -56.92 -0.55 -10.20 16 14 C 0.54 15.08 7.79 70.16 0.55 15.63 16 15 O -0.53 -17.23 11.68 19.70 0.23 -17.00 16 16 C -0.31 -7.17 6.26 -18.79 -0.12 -7.28 16 17 C 0.17 2.32 11.84 84.30 1.00 3.32 16 18 N -0.44 -5.37 7.20 -56.40 -0.41 -5.78 16 19 H 0.47 1.65 8.96 -213.53 -1.91 -0.26 16 20 N -0.30 -6.20 12.63 -44.50 -0.56 -6.76 16 21 C 0.17 4.11 6.94 44.09 0.31 4.42 16 22 C -0.06 -1.45 5.74 -20.05 -0.12 -1.57 16 23 C -0.07 -1.91 7.78 22.49 0.18 -1.73 16 24 C -0.14 -3.04 10.03 22.24 0.22 -2.81 16 25 C -0.10 -1.82 10.04 22.31 0.22 -1.60 16 26 C -0.13 -2.28 10.03 22.24 0.22 -2.06 16 27 C -0.10 -2.00 9.76 22.49 0.22 -1.78 16 28 C -0.14 -4.53 5.72 30.67 0.18 -4.36 16 29 C 0.15 5.86 6.52 86.36 0.56 6.42 16 30 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.04 1.45 7.08 -2.39 -0.02 1.44 16 32 H 0.06 2.82 4.50 -2.39 -0.01 2.81 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.53 7.16 -2.38 -0.02 2.51 16 36 H 0.24 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.12 3.61 5.62 -2.91 -0.02 3.60 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 Total: -1.00 -75.25 367.39 3.09 -72.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.98 Total: 13.19 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.32 Total: -2.91 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -2.60 Total: -102.61 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.32 Total: -27.21 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.37 kcal Total: -75.25 3.09 -72.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766878058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.093 kcal (2) G-P(sol) polarization free energy of solvation -75.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds