Wall clock time and date at job start Tue Mar 31 2020 23:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.35474 * 124.78618 * 265.02448 * 11 10 9 13 13 C 1.36366 * 109.77195 * 179.97438 * 12 11 10 14 14 C 1.46911 * 126.77028 * 179.97438 * 13 12 11 15 15 O 1.21675 * 120.00123 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00225 * 359.97438 * 14 13 12 17 17 N 1.40101 * 120.00326 * 179.97438 * 16 14 13 18 18 C 1.34775 * 119.99957 * 180.02562 * 17 16 14 19 19 O 1.21285 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.52992 * 117.50059 * 248.61774 * 20 18 17 22 22 C 1.52996 * 60.00352 * 252.51256 * 21 20 18 23 23 C 1.47445 * 106.46323 * 0.02562 * 13 12 11 24 24 C 1.39283 * 134.00914 * 179.97438 * 23 13 12 25 25 C 1.37755 * 119.66885 * 179.97438 * 24 23 13 26 26 C 1.38754 * 120.30368 * 359.97438 * 25 24 23 27 27 C 1.37765 * 120.63249 * 359.97438 * 26 25 24 28 28 C 1.37963 * 124.79028 * 84.71582 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08003 * 125.11689 * 359.97438 * 12 11 10 35 35 H 0.97001 * 119.99821 * 0.02562 * 16 14 13 36 36 H 0.96997 * 119.99703 * 359.97438 * 17 16 14 37 37 H 1.09007 * 115.55149 * 34.33526 * 20 18 17 38 38 H 1.09001 * 117.49962 * 0.02562 * 21 20 18 39 39 H 1.09010 * 117.50070 * 145.02287 * 21 20 18 40 40 H 1.09006 * 117.50017 * 252.51092 * 22 21 20 41 41 H 1.08998 * 117.51948 * 107.48003 * 22 21 20 42 42 H 1.07990 * 120.16077 * 0.02562 * 24 23 13 43 43 H 1.08001 * 119.84588 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.68265 * 180.02562 * 26 25 24 45 45 H 1.08007 * 120.02945 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 1.2092 -5.6537 1.0881 13 6 0.5238 -6.7770 0.7306 14 6 0.0148 -7.8205 1.6308 15 8 -0.5848 -8.7767 1.1762 16 7 0.2120 -7.7186 2.9601 17 7 -0.2739 -8.7135 3.8187 18 6 -0.0771 -8.6113 5.1481 19 8 0.5209 -7.6584 5.6011 20 6 -0.6002 -9.6811 6.0715 21 6 -1.7524 -9.3064 7.0058 22 6 -0.3446 -9.5076 7.5701 23 6 0.3953 -6.7385 -0.7378 24 6 -0.1879 -7.5817 -1.6805 25 6 -0.1348 -7.2508 -3.0167 26 6 0.4953 -6.0838 -3.4245 27 6 1.0754 -5.2403 -2.5025 28 6 1.0291 -5.5550 -1.1482 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.4709 -5.3812 2.0999 35 1 0.6896 -6.9562 3.3226 36 1 -0.7525 -9.4754 3.4563 37 1 -0.5848 -10.6954 5.6725 38 1 -2.1324 -8.2862 6.9522 39 1 -2.4956 -10.0741 7.2214 40 1 -0.1615 -10.4078 8.1569 41 1 0.2022 -8.6199 7.8879 42 1 -0.6800 -8.4899 -1.3655 43 1 -0.5857 -7.9028 -3.7502 44 1 0.5307 -5.8340 -4.4746 45 1 1.5630 -4.3342 -2.8307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767409910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:08 Heat of formation + Delta-G solvation = 39.289137 kcal Electronic energy + Delta-G solvation = -28121.589391 eV Core-core repulsion = 24106.380751 eV Total energy + Delta-G solvation = -4015.208640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34777 -40.45865 -38.94901 -36.94833 -36.59820 -35.26010 -34.14373 -32.57239 -31.47832 -30.47020 -28.93232 -28.43027 -25.50258 -24.65034 -22.91843 -22.80978 -22.46703 -21.72701 -21.33036 -20.32519 -19.57784 -18.19851 -17.79060 -17.07038 -16.52710 -16.21168 -15.73795 -15.44426 -15.28009 -15.10565 -14.88702 -14.81484 -14.44592 -14.11867 -13.98340 -13.65413 -13.37566 -12.99504 -12.95682 -12.53294 -12.41423 -11.95125 -11.85437 -11.48696 -11.46686 -11.24911 -11.10518 -11.05225 -10.97116 -10.76299 -10.70238 -10.43045 -10.33042 -10.01086 -9.95123 -9.47211 -9.29784 -8.57416 -8.50393 -8.02152 -7.42340 -6.21077 -4.27721 1.17761 1.66753 1.77250 2.03761 2.26920 3.05691 3.20006 3.27577 3.29621 3.41129 3.52037 3.79698 4.19505 4.29052 4.31125 4.43897 4.47443 4.68892 4.76936 4.91817 4.95638 5.15218 5.21816 5.26620 5.33157 5.40356 5.45757 5.55105 5.64709 5.74170 5.79075 5.88686 5.93319 5.96521 6.27820 6.32349 6.52958 6.61075 6.66919 6.81876 6.88493 6.96185 7.27225 7.31913 7.42229 7.48198 7.51115 7.74842 7.76570 8.07847 8.33123 8.77893 9.38486 10.89693 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.002821 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.032882 B = 9924.336473 C =12704.087363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.099 3.901 11 N -0.446 5.446 12 C 0.131 3.869 13 C -0.254 4.254 14 C 0.603 3.397 15 O -0.550 6.550 16 N -0.530 5.530 17 N -0.514 5.514 18 C 0.541 3.459 19 O -0.540 6.540 20 C -0.188 4.188 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.057 4.057 24 C -0.074 4.074 25 C -0.143 4.143 26 C -0.109 4.109 27 C -0.110 4.110 28 C 0.092 3.908 29 H 0.264 0.736 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.173 0.827 35 H 0.429 0.571 36 H 0.432 0.568 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 -19.628 6.597 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.020 4.020 11 N -0.123 5.123 12 C -0.006 4.006 13 C -0.267 4.267 14 C 0.394 3.606 15 O -0.427 6.427 16 N -0.279 5.279 17 N -0.261 5.261 18 C 0.327 3.673 19 O -0.416 6.416 20 C -0.210 4.210 21 C -0.188 4.188 22 C -0.181 4.181 23 C -0.061 4.061 24 C -0.093 4.093 25 C -0.162 4.162 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.013 4.013 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.190 0.810 35 H 0.272 0.728 36 H 0.274 0.726 37 H 0.147 0.853 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.616 -19.180 6.558 20.279 hybrid contribution 0.398 1.109 -0.012 1.178 sum -0.218 -18.071 6.546 19.221 Atomic orbital electron populations 1.69967 1.06158 1.27148 1.49212 1.25005 0.94870 0.99492 0.94682 0.86507 0.79770 0.82961 0.78285 1.20457 1.21032 1.19714 1.20969 0.93031 0.90233 1.52819 0.92223 1.19463 0.94008 0.90484 0.98639 1.22529 0.95828 0.80352 1.03281 1.44419 1.44039 1.19649 1.04145 1.22129 0.95615 0.90521 0.92345 1.19295 1.16000 0.99033 0.92325 1.17324 0.78706 0.85598 0.78927 1.90747 1.43016 1.33294 1.75639 1.44832 1.59516 1.20986 1.02568 1.44723 1.57762 1.21030 1.02552 1.19877 0.79821 0.87220 0.80369 1.90741 1.41941 1.33277 1.75668 1.22001 1.07467 0.98957 0.92598 1.23015 0.91581 1.03780 1.00450 1.23009 0.98758 1.04642 0.91648 1.18594 1.01507 0.95114 0.90897 1.20542 0.98248 0.98904 0.91607 1.20895 1.02070 0.97828 0.95388 1.20772 0.98714 0.94585 0.98805 1.20164 1.02852 1.00782 0.89216 1.18263 1.00688 0.93594 0.88725 0.92598 0.95796 0.95600 0.89970 0.89669 0.80958 0.72834 0.72592 0.85264 0.87926 0.87418 0.87585 0.87155 0.85455 0.86194 0.85868 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.80 9.11 -34.44 -0.31 -14.11 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 10 C 0.10 1.80 5.89 -4.05 -0.02 1.78 16 11 N -0.45 -7.66 2.74 -114.23 -0.31 -7.97 16 12 C 0.13 1.98 10.75 -16.62 -0.18 1.80 16 13 C -0.25 -4.08 6.27 -103.31 -0.65 -4.73 16 14 C 0.60 9.22 7.91 -12.75 -0.10 9.12 16 15 O -0.55 -9.44 16.00 5.21 0.08 -9.35 16 16 N -0.53 -6.86 6.25 30.32 0.19 -6.68 16 17 N -0.51 -5.74 6.26 31.22 0.20 -5.54 16 18 C 0.54 5.97 7.73 -10.99 -0.08 5.88 16 19 O -0.54 -7.81 16.10 5.55 0.09 -7.72 16 20 C -0.19 -1.36 6.19 -91.78 -0.57 -1.93 16 21 C -0.15 -0.94 10.23 -26.74 -0.27 -1.21 16 22 C -0.14 -0.95 10.04 -26.73 -0.27 -1.22 16 23 C -0.06 -0.98 6.27 -104.95 -0.66 -1.64 16 24 C -0.07 -1.18 9.85 -39.37 -0.39 -1.57 16 25 C -0.14 -1.98 10.03 -39.57 -0.40 -2.38 16 26 C -0.11 -1.54 10.01 -39.56 -0.40 -1.94 16 27 C -0.11 -1.79 9.97 -39.43 -0.39 -2.18 16 28 C 0.09 1.62 6.79 -83.97 -0.57 1.05 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 34 H 0.17 2.01 7.38 -52.48 -0.39 1.62 16 35 H 0.43 5.22 6.88 -182.60 -1.26 3.96 16 36 H 0.43 4.17 8.00 -182.60 -1.46 2.71 16 37 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.92 7.67 -51.93 -0.40 0.52 16 42 H 0.13 1.96 7.45 -52.49 -0.39 1.57 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -33.44 392.00 -11.72 -45.16 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.08 Total: 7.04 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -5.51 Total: -11.55 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.81 Total: -44.99 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.17 Total: -17.07 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.44 -11.72 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767409910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.450 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds