Wall clock time and date at job start Tue Mar 31 2020 23:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.35474 * 124.78618 * 265.02448 * 11 10 9 13 13 C 1.36366 * 109.77195 * 179.97438 * 12 11 10 14 14 C 1.46911 * 126.77028 * 179.97438 * 13 12 11 15 15 O 1.21675 * 120.00123 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00225 * 359.97438 * 14 13 12 17 17 N 1.40101 * 120.00326 * 179.97438 * 16 14 13 18 18 C 1.34775 * 119.99957 * 180.02562 * 17 16 14 19 19 O 1.21285 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.52992 * 117.50059 * 248.61774 * 20 18 17 22 22 C 1.52996 * 60.00352 * 252.51256 * 21 20 18 23 23 C 1.47445 * 106.46323 * 0.02562 * 13 12 11 24 24 C 1.39283 * 134.00914 * 179.97438 * 23 13 12 25 25 C 1.37755 * 119.66885 * 179.97438 * 24 23 13 26 26 C 1.38754 * 120.30368 * 359.97438 * 25 24 23 27 27 C 1.37765 * 120.63249 * 359.97438 * 26 25 24 28 28 C 1.37963 * 124.79028 * 84.71582 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08003 * 125.11689 * 359.97438 * 12 11 10 35 35 H 0.97001 * 119.99821 * 0.02562 * 16 14 13 36 36 H 0.96997 * 119.99703 * 359.97438 * 17 16 14 37 37 H 1.09007 * 115.55149 * 34.33526 * 20 18 17 38 38 H 1.09001 * 117.49962 * 0.02562 * 21 20 18 39 39 H 1.09010 * 117.50070 * 145.02287 * 21 20 18 40 40 H 1.09006 * 117.50017 * 252.51092 * 22 21 20 41 41 H 1.08998 * 117.51948 * 107.48003 * 22 21 20 42 42 H 1.07990 * 120.16077 * 0.02562 * 24 23 13 43 43 H 1.08001 * 119.84588 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.68265 * 180.02562 * 26 25 24 45 45 H 1.08007 * 120.02945 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 1.2092 -5.6537 1.0881 13 6 0.5238 -6.7770 0.7306 14 6 0.0148 -7.8205 1.6308 15 8 -0.5848 -8.7767 1.1762 16 7 0.2120 -7.7186 2.9601 17 7 -0.2739 -8.7135 3.8187 18 6 -0.0771 -8.6113 5.1481 19 8 0.5209 -7.6584 5.6011 20 6 -0.6002 -9.6811 6.0715 21 6 -1.7524 -9.3064 7.0058 22 6 -0.3446 -9.5076 7.5701 23 6 0.3953 -6.7385 -0.7378 24 6 -0.1879 -7.5817 -1.6805 25 6 -0.1348 -7.2508 -3.0167 26 6 0.4953 -6.0838 -3.4245 27 6 1.0754 -5.2403 -2.5025 28 6 1.0291 -5.5550 -1.1482 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.4709 -5.3812 2.0999 35 1 0.6896 -6.9562 3.3226 36 1 -0.7525 -9.4754 3.4563 37 1 -0.5848 -10.6954 5.6725 38 1 -2.1324 -8.2862 6.9522 39 1 -2.4956 -10.0741 7.2214 40 1 -0.1615 -10.4078 8.1569 41 1 0.2022 -8.6199 7.8879 42 1 -0.6800 -8.4899 -1.3655 43 1 -0.5857 -7.9028 -3.7502 44 1 0.5307 -5.8340 -4.4746 45 1 1.5630 -4.3342 -2.8307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767409910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:07 Heat of formation + Delta-G solvation = 19.592085 kcal Electronic energy + Delta-G solvation = -28122.443519 eV Core-core repulsion = 24106.380751 eV Total energy + Delta-G solvation = -4016.062768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58569 -41.41756 -40.04089 -38.17588 -37.30361 -36.29698 -35.87893 -34.18145 -32.65172 -31.85465 -30.30582 -29.71676 -27.05476 -25.66652 -24.07048 -23.97210 -23.30805 -23.06049 -22.34813 -21.62431 -20.62487 -19.18364 -18.87235 -18.68136 -17.84098 -17.41417 -16.78521 -16.67091 -16.58946 -16.42990 -15.99943 -15.87572 -15.56559 -15.38778 -15.14319 -14.98142 -14.61517 -14.46051 -14.29473 -13.67295 -13.65794 -13.49053 -12.91882 -12.84089 -12.59953 -12.54635 -12.42525 -12.37755 -12.07312 -11.97096 -11.69304 -11.62513 -11.54717 -11.42564 -11.37891 -11.11488 -10.66113 -10.60481 -9.55870 -9.24777 -8.68182 -8.26770 -6.40417 -0.02961 0.57115 0.70101 0.91515 1.30181 1.40573 1.40964 1.51947 1.77275 2.28034 2.38108 2.85129 2.93479 2.97862 3.08132 3.51128 3.61181 3.68046 3.77130 3.85750 3.96416 4.07614 4.19296 4.20964 4.28103 4.38642 4.41695 4.61009 4.66692 4.69113 4.77174 4.78465 4.89460 5.04616 5.09864 5.24116 5.33614 5.35395 5.49557 5.50806 5.58647 5.64706 5.68265 5.73642 5.81167 6.00531 6.19690 6.22388 6.43405 6.76118 6.77843 7.26100 7.30755 8.84678 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.002821 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.032882 B = 9924.336473 C =12704.087363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.021 3.979 10 C 0.116 3.884 11 N -0.456 5.456 12 C 0.133 3.867 13 C -0.265 4.265 14 C 0.606 3.394 15 O -0.572 6.572 16 N -0.526 5.526 17 N -0.510 5.510 18 C 0.538 3.462 19 O -0.579 6.579 20 C -0.191 4.191 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.080 4.080 24 C -0.089 4.089 25 C -0.134 4.134 26 C -0.103 4.103 27 C -0.131 4.131 28 C 0.067 3.933 29 H 0.264 0.736 30 H -0.005 1.005 31 H -0.009 1.009 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.203 0.797 35 H 0.433 0.567 36 H 0.440 0.560 37 H 0.161 0.839 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -20.894 6.784 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.003 4.003 11 N -0.134 5.134 12 C -0.003 4.003 13 C -0.277 4.277 14 C 0.397 3.603 15 O -0.451 6.451 16 N -0.273 5.273 17 N -0.258 5.258 18 C 0.327 3.673 19 O -0.458 6.458 20 C -0.214 4.214 21 C -0.180 4.180 22 C -0.182 4.182 23 C -0.085 4.085 24 C -0.108 4.108 25 C -0.153 4.153 26 C -0.122 4.122 27 C -0.151 4.151 28 C -0.037 4.037 29 H 0.073 0.927 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.220 0.780 35 H 0.276 0.724 36 H 0.283 0.717 37 H 0.178 0.822 38 H 0.105 0.895 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.172 0.828 44 H 0.173 0.827 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.107 -20.475 6.756 21.561 hybrid contribution 0.119 1.437 -0.084 1.444 sum 0.226 -19.038 6.671 20.174 Atomic orbital electron populations 1.70116 1.08037 1.27987 1.50963 1.25966 0.95623 1.03514 0.94418 0.85413 0.78759 0.78209 0.78491 1.19844 1.21261 1.18160 1.21467 0.93935 0.91122 1.51448 0.90759 1.19250 0.94331 0.92558 0.95545 1.22183 0.94339 0.78968 1.04850 1.44331 1.44814 1.19475 1.04746 1.22602 0.94740 0.89895 0.93086 1.19461 1.16302 0.99633 0.92336 1.17174 0.78506 0.85114 0.79486 1.90722 1.44174 1.34052 1.76182 1.44699 1.58841 1.21481 1.02303 1.44931 1.57663 1.20723 1.02458 1.20685 0.78880 0.87484 0.80297 1.90722 1.43741 1.35109 1.76206 1.22145 1.08214 0.98929 0.92069 1.23124 0.91860 1.03839 0.99189 1.23093 0.98808 1.04925 0.91333 1.18939 1.02135 0.95548 0.91837 1.20732 0.98636 0.98952 0.92439 1.21290 1.00839 0.97888 0.95247 1.21172 0.97150 0.93897 0.99995 1.20399 1.03917 1.01457 0.89318 1.18592 1.01568 0.94165 0.89397 0.92711 0.98657 0.99031 0.89071 0.87370 0.78027 0.72419 0.71683 0.82162 0.89546 0.84540 0.84851 0.89453 0.85419 0.82797 0.82731 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -28.18 9.11 25.60 0.23 -27.95 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.02 5.30 29.85 0.16 1.18 16 10 C 0.12 4.22 5.89 86.38 0.51 4.72 16 11 N -0.46 -15.85 2.74 -515.30 -1.41 -17.27 16 12 C 0.13 4.04 10.75 83.69 0.90 4.94 16 13 C -0.26 -8.64 6.27 -19.02 -0.12 -8.76 16 14 C 0.61 18.65 7.91 86.51 0.68 19.34 16 15 O -0.57 -19.72 16.00 -4.27 -0.07 -19.79 16 16 N -0.53 -13.60 6.25 -176.23 -1.10 -14.70 16 17 N -0.51 -11.13 6.26 -173.53 -1.09 -12.22 16 18 C 0.54 11.60 7.73 87.66 0.68 12.28 16 19 O -0.58 -16.93 16.10 -3.05 -0.05 -16.98 16 20 C -0.19 -2.42 6.19 -11.54 -0.07 -2.49 16 21 C -0.14 -1.50 10.23 30.59 0.31 -1.19 16 22 C -0.14 -1.68 10.04 30.59 0.31 -1.37 16 23 C -0.08 -2.82 6.27 -20.08 -0.13 -2.94 16 24 C -0.09 -2.79 9.85 22.41 0.22 -2.57 16 25 C -0.13 -3.50 10.03 22.28 0.22 -3.28 16 26 C -0.10 -2.76 10.01 22.28 0.22 -2.54 16 27 C -0.13 -4.27 9.97 22.37 0.22 -4.04 16 28 C 0.07 2.39 6.79 38.91 0.26 2.66 16 29 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 30 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 33 H 0.11 3.40 8.11 -2.39 -0.02 3.38 16 34 H 0.20 4.61 7.38 -2.91 -0.02 4.58 16 35 H 0.43 10.55 6.88 -213.32 -1.47 9.08 16 36 H 0.44 8.12 8.00 -213.32 -1.71 6.41 16 37 H 0.16 1.02 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 1.45 7.67 -2.39 -0.02 1.43 16 42 H 0.13 3.92 7.45 -2.92 -0.02 3.90 16 43 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 45 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -74.81 392.00 1.54 -73.27 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -2.13 Total: 29.77 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.08 Total: -11.37 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.32 Total: -98.95 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.12 Total: -36.76 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -74.81 1.54 -73.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767409910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.860 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds