Wall clock time and date at job start Wed Apr 1 2020 00:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48499 * 109.47233 * 239.99933 * 3 2 1 5 5 H 1.48496 * 109.47484 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47021 * 120.00147 * 3 2 1 7 7 C 1.38800 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99406 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99822 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46927 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47201 * 179.97438 * 11 10 9 13 13 O 1.45194 * 109.47374 * 179.97438 * 12 11 10 14 14 C 1.34234 * 117.00312 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99610 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99983 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.88956 * 303.81438 * 16 14 13 18 18 C 1.54628 * 110.96889 * 67.62652 * 16 14 13 19 19 C 1.51287 * 104.25931 * 142.69283 * 18 16 14 20 20 O 1.21277 * 124.94800 * 164.01040 * 19 18 16 21 21 N 1.34419 * 110.11247 * 344.15087 * 19 18 16 22 22 C 1.46494 * 124.35081 * 179.43567 * 21 19 18 23 23 C 1.54961 * 110.76455 * 306.32717 * 22 21 19 24 24 C 1.54270 * 104.16191 * 156.22179 * 23 22 21 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 C 1.46766 * 111.30121 * 359.16163 * 21 19 18 28 28 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47659 * 60.00143 * 10 9 7 30 30 H 1.08999 * 109.47292 * 299.99942 * 10 9 7 31 31 H 1.08994 * 109.47395 * 60.00179 * 11 10 9 32 32 H 1.09004 * 109.47226 * 299.99583 * 11 10 9 33 33 H 1.09007 * 109.46971 * 59.99919 * 12 11 10 34 34 H 1.08999 * 109.47209 * 299.99902 * 12 11 10 35 35 H 1.08997 * 110.48840 * 261.59503 * 18 16 14 36 36 H 1.09004 * 110.48428 * 24.10586 * 18 16 14 37 37 H 1.09003 * 110.67701 * 182.92662 * 22 21 19 38 38 H 1.08997 * 110.47708 * 37.56776 * 23 22 21 39 39 H 1.09002 * 110.53308 * 274.90168 * 23 22 21 40 40 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 41 41 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 42 42 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 43 43 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 44 44 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 45 45 H 1.09001 * 110.48482 * 264.93365 * 26 25 24 46 46 H 1.09005 * 110.24642 * 136.28449 * 27 21 19 47 47 H 1.08994 * 110.24849 * 258.28885 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9792 -5.3242 -0.0012 12 6 3.1512 -6.3078 -0.0018 13 8 2.6421 -7.6675 -0.0018 14 6 3.5484 -8.6577 -0.0029 15 8 4.7281 -8.3968 -0.0033 16 6 3.0945 -10.0947 -0.0024 17 1 2.4380 -10.2946 0.8445 18 6 2.4021 -10.4568 -1.3368 19 6 2.8424 -11.8779 -1.6114 20 8 2.3154 -12.6271 -2.4062 21 7 3.9009 -12.1903 -0.8440 22 6 4.5705 -13.4932 -0.8502 23 6 3.5518 -14.6357 -0.6085 24 6 4.2225 -15.8775 -1.2313 25 6 5.2215 -15.3591 -2.2805 26 6 5.1232 -13.8197 -2.2599 27 6 4.3035 -11.0563 -0.0038 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7315 0.8894 30 1 3.1244 -3.7314 -0.8905 31 1 1.3709 -5.4841 -0.8913 32 1 1.3704 -5.4847 0.8886 33 1 3.7600 -6.1481 0.8882 34 1 3.7597 -6.1473 -0.8918 35 1 1.3186 -10.4038 -1.2311 36 1 2.7397 -9.7941 -2.1337 37 1 5.3675 -13.5199 -0.1071 38 1 2.6093 -14.4188 -1.1112 39 1 3.3903 -14.7844 0.4591 40 1 3.4720 -16.5070 -1.7094 41 1 4.7486 -16.4428 -0.4621 42 1 6.2326 -15.6722 -2.0200 43 1 4.9564 -15.7377 -3.2677 44 1 6.1079 -13.3727 -2.3964 45 1 4.4348 -13.4711 -3.0297 46 1 4.5171 -11.3951 1.0100 47 1 5.1773 -10.5631 -0.4294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805367245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:02 Heat of formation + Delta-G solvation = -143.089770 kcal Electronic energy + Delta-G solvation = -26422.789709 eV Core-core repulsion = 22502.823727 eV Total energy + Delta-G solvation = -3919.965982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50343 -40.33240 -37.90593 -37.22479 -36.34939 -33.65352 -32.68237 -32.46622 -29.12463 -28.38218 -28.08918 -26.69364 -25.52313 -23.88833 -22.24335 -21.42306 -20.79272 -20.61144 -19.39713 -18.24904 -17.47396 -17.38982 -17.09708 -16.62082 -16.38847 -15.53306 -15.30333 -14.88765 -14.84352 -14.66525 -14.34870 -14.11262 -13.97908 -13.75066 -13.58707 -13.40373 -12.83171 -12.81387 -12.49444 -12.22002 -12.07741 -11.91366 -11.76859 -11.65682 -11.53793 -11.41138 -11.34891 -11.21019 -11.03462 -10.98913 -10.80208 -10.77720 -10.67678 -10.38426 -9.98634 -9.67762 -9.09947 -9.09519 -8.39772 -6.59810 -6.27270 -3.98818 1.84981 2.16561 2.17675 2.59261 3.18967 3.21003 3.25730 3.48156 3.69760 3.84342 4.13899 4.17412 4.20423 4.30060 4.31841 4.47935 4.65705 4.79421 4.91564 4.99518 5.02418 5.04009 5.08326 5.09293 5.09605 5.12103 5.25252 5.28631 5.34143 5.36677 5.40100 5.40812 5.52336 5.61695 5.67706 5.70745 5.79300 5.81771 5.95300 6.08145 6.23810 6.30476 6.38879 6.60706 6.66842 7.46075 7.56064 7.75365 8.31782 9.18999 10.80794 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.040078 B = 0.001500 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.477040 B =18667.857609 C =18919.839167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.349 6.349 14 C 0.473 3.527 15 O -0.503 6.503 16 C -0.097 4.097 17 H 0.131 0.869 18 C -0.144 4.144 19 C 0.522 3.478 20 O -0.520 6.520 21 N -0.613 5.613 22 C 0.152 3.848 23 C -0.139 4.139 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.138 4.138 27 C 0.113 3.887 28 H 0.269 0.731 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -30.266 0.329 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.003 4.003 13 O -0.265 6.265 14 C 0.315 3.685 15 O -0.391 6.391 16 C -0.117 4.117 17 H 0.149 0.851 18 C -0.184 4.184 19 C 0.310 3.690 20 O -0.396 6.396 21 N -0.347 5.347 22 C 0.050 3.950 23 C -0.178 4.178 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.177 4.177 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.228 -30.669 -0.091 31.754 hybrid contribution 2.081 1.541 0.135 2.593 sum 10.309 -29.128 0.044 30.898 Atomic orbital electron populations 1.70006 1.05929 1.27561 1.46943 1.25012 0.95092 0.99112 0.94463 0.86206 0.79233 0.81108 0.78883 1.19906 1.20771 1.19904 1.22657 0.94558 0.90700 1.58945 0.90888 1.84661 1.08666 0.99201 1.96894 1.23182 1.03516 0.96331 1.03347 1.21295 0.96393 0.91549 1.04428 1.23350 0.97912 0.76227 1.02767 1.86477 1.39952 1.17017 1.83014 1.22939 0.84644 0.88173 0.72728 1.90693 1.18465 1.84815 1.45126 1.21868 0.99352 0.88785 1.01659 0.85112 1.22355 1.03951 0.95389 0.96697 1.20679 0.79583 0.88906 0.79845 1.90726 1.58116 1.55347 1.35363 1.48304 1.31869 1.12844 1.41691 1.22069 0.94444 0.80391 0.98125 1.22764 0.99988 0.94010 1.01014 1.22030 0.98384 0.97259 0.98129 1.22033 0.99306 0.94850 0.99642 1.22742 1.01412 0.96229 0.97304 1.22059 0.96588 0.85676 0.96629 0.92164 0.91723 0.91728 0.90256 0.90262 0.90947 0.90976 0.86232 0.87110 0.88404 0.89586 0.91456 0.91508 0.91736 0.91702 0.91513 0.91395 0.90111 0.89185 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -14.64 9.50 30.94 0.29 -14.35 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.12 -3.11 21.44 -107.50 -2.30 -5.41 16 10 C -0.12 -2.20 5.67 37.16 0.21 -1.99 16 11 C -0.10 -1.49 5.60 -26.73 -0.15 -1.64 16 12 C 0.07 0.94 5.47 37.16 0.20 1.14 16 13 O -0.35 -4.08 10.22 -39.27 -0.40 -4.48 16 14 C 0.47 4.87 7.18 36.01 0.26 5.13 16 15 O -0.50 -6.43 15.25 -18.75 -0.29 -6.71 16 16 C -0.10 -0.66 3.66 -90.14 -0.33 -0.99 16 17 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.14 -1.07 6.41 -26.74 -0.17 -1.25 16 19 C 0.52 4.97 7.24 -10.86 -0.08 4.89 16 20 O -0.52 -6.64 14.88 5.56 0.08 -6.56 16 21 N -0.61 -4.65 2.96 -162.54 -0.48 -5.13 16 22 C 0.15 1.03 3.58 -65.90 -0.24 0.79 16 23 C -0.14 -0.97 6.32 -25.03 -0.16 -1.13 16 24 C -0.12 -0.71 6.80 -25.61 -0.17 -0.88 16 25 C -0.12 -0.72 6.80 -25.62 -0.17 -0.90 16 26 C -0.14 -1.01 6.36 -25.07 -0.16 -1.17 16 27 C 0.11 0.72 6.69 -3.12 -0.02 0.70 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.92 8.13 -51.92 -0.42 0.50 16 34 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.85 7.89 -51.93 -0.41 0.44 16 37 H 0.10 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.09 0.82 6.17 -51.93 -0.32 0.50 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.79 6.62 -51.93 -0.34 0.45 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.70 6.96 -51.93 -0.36 0.34 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -33.17 395.58 -10.24 -43.41 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.74 Total: -2.73 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.78 Total: -9.72 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.25 Total: -29.95 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.60 Total: -17.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.30 Total: -5.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.17 -10.24 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805367245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.678 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds