Wall clock time and date at job start Wed Apr 1 2020 00:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48499 * 109.47233 * 239.99933 * 3 2 1 5 5 H 1.48496 * 109.47484 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47021 * 120.00147 * 3 2 1 7 7 C 1.38800 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99406 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99822 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46927 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47201 * 179.97438 * 11 10 9 13 13 O 1.45194 * 109.47374 * 179.97438 * 12 11 10 14 14 C 1.34234 * 117.00312 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99610 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99983 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.88956 * 303.81438 * 16 14 13 18 18 C 1.54628 * 110.96889 * 67.62652 * 16 14 13 19 19 C 1.51287 * 104.25931 * 142.69283 * 18 16 14 20 20 O 1.21277 * 124.94800 * 164.01040 * 19 18 16 21 21 N 1.34419 * 110.11247 * 344.15087 * 19 18 16 22 22 C 1.46494 * 124.35081 * 179.43567 * 21 19 18 23 23 C 1.54961 * 110.76455 * 306.32717 * 22 21 19 24 24 C 1.54270 * 104.16191 * 156.22179 * 23 22 21 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 C 1.46766 * 111.30121 * 359.16163 * 21 19 18 28 28 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47659 * 60.00143 * 10 9 7 30 30 H 1.08999 * 109.47292 * 299.99942 * 10 9 7 31 31 H 1.08994 * 109.47395 * 60.00179 * 11 10 9 32 32 H 1.09004 * 109.47226 * 299.99583 * 11 10 9 33 33 H 1.09007 * 109.46971 * 59.99919 * 12 11 10 34 34 H 1.08999 * 109.47209 * 299.99902 * 12 11 10 35 35 H 1.08997 * 110.48840 * 261.59503 * 18 16 14 36 36 H 1.09004 * 110.48428 * 24.10586 * 18 16 14 37 37 H 1.09003 * 110.67701 * 182.92662 * 22 21 19 38 38 H 1.08997 * 110.47708 * 37.56776 * 23 22 21 39 39 H 1.09002 * 110.53308 * 274.90168 * 23 22 21 40 40 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 41 41 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 42 42 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 43 43 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 44 44 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 45 45 H 1.09001 * 110.48482 * 264.93365 * 26 25 24 46 46 H 1.09005 * 110.24642 * 136.28449 * 27 21 19 47 47 H 1.08994 * 110.24849 * 258.28885 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9792 -5.3242 -0.0012 12 6 3.1512 -6.3078 -0.0018 13 8 2.6421 -7.6675 -0.0018 14 6 3.5484 -8.6577 -0.0029 15 8 4.7281 -8.3968 -0.0033 16 6 3.0945 -10.0947 -0.0024 17 1 2.4380 -10.2946 0.8445 18 6 2.4021 -10.4568 -1.3368 19 6 2.8424 -11.8779 -1.6114 20 8 2.3154 -12.6271 -2.4062 21 7 3.9009 -12.1903 -0.8440 22 6 4.5705 -13.4932 -0.8502 23 6 3.5518 -14.6357 -0.6085 24 6 4.2225 -15.8775 -1.2313 25 6 5.2215 -15.3591 -2.2805 26 6 5.1232 -13.8197 -2.2599 27 6 4.3035 -11.0563 -0.0038 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7315 0.8894 30 1 3.1244 -3.7314 -0.8905 31 1 1.3709 -5.4841 -0.8913 32 1 1.3704 -5.4847 0.8886 33 1 3.7600 -6.1481 0.8882 34 1 3.7597 -6.1473 -0.8918 35 1 1.3186 -10.4038 -1.2311 36 1 2.7397 -9.7941 -2.1337 37 1 5.3675 -13.5199 -0.1071 38 1 2.6093 -14.4188 -1.1112 39 1 3.3903 -14.7844 0.4591 40 1 3.4720 -16.5070 -1.7094 41 1 4.7486 -16.4428 -0.4621 42 1 6.2326 -15.6722 -2.0200 43 1 4.9564 -15.7377 -3.2677 44 1 6.1079 -13.3727 -2.3964 45 1 4.4348 -13.4711 -3.0297 46 1 4.5171 -11.3951 1.0100 47 1 5.1773 -10.5631 -0.4294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805367245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:01 Heat of formation + Delta-G solvation = -160.947465 kcal Electronic energy + Delta-G solvation = -26423.564077 eV Core-core repulsion = 22502.823727 eV Total energy + Delta-G solvation = -3920.740350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22769 -41.14439 -38.48489 -38.11490 -37.15074 -34.91591 -34.57659 -33.31655 -29.65681 -29.09102 -28.67011 -28.06348 -27.37961 -24.68916 -22.85255 -22.68559 -21.48271 -21.19497 -20.05943 -19.57529 -18.94043 -18.06893 -17.97404 -17.48686 -17.06686 -16.88997 -16.37351 -16.06028 -15.91637 -15.86192 -15.26159 -14.98349 -14.77632 -14.57151 -14.43412 -14.17277 -14.10783 -13.88345 -13.79474 -13.14454 -13.05423 -12.93068 -12.71513 -12.63109 -12.57534 -12.38868 -12.37045 -12.28724 -12.12333 -12.05307 -11.94923 -11.71207 -11.49869 -11.43340 -11.27810 -11.13336 -10.71483 -10.35003 -9.72512 -8.67095 -8.37409 -6.13856 1.03258 1.24387 1.38352 1.41513 1.45610 1.49569 1.77003 1.98686 2.28002 2.97259 3.06512 3.22440 3.30589 3.58767 3.63750 3.66852 3.74699 3.87650 3.97335 3.99406 4.03726 4.17861 4.33481 4.35121 4.41835 4.46281 4.51651 4.53473 4.57932 4.59589 4.70181 4.73863 4.76079 4.84146 4.88018 5.04207 5.04486 5.07389 5.14370 5.17456 5.25599 5.40069 5.42626 5.46073 5.66083 6.04102 6.17927 6.59960 7.05146 7.06221 8.71560 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.040078 B = 0.001500 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.477040 B =18667.857609 C =18919.839167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.186 6.186 10 C -0.092 4.092 11 C -0.087 4.087 12 C 0.081 3.919 13 O -0.351 6.351 14 C 0.477 3.523 15 O -0.527 6.527 16 C -0.085 4.085 17 H 0.161 0.839 18 C -0.141 4.141 19 C 0.515 3.485 20 O -0.561 6.561 21 N -0.608 5.608 22 C 0.148 3.852 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.140 4.140 27 C 0.115 3.885 28 H 0.272 0.728 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.119 0.881 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 -30.998 1.643 32.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.690 4.690 8 H 0.093 0.907 9 S 0.043 5.957 10 C -0.241 4.241 11 C -0.126 4.126 12 C 0.005 3.995 13 O -0.267 6.267 14 C 0.320 3.680 15 O -0.416 6.416 16 C -0.104 4.104 17 H 0.178 0.822 18 C -0.181 4.181 19 C 0.304 3.696 20 O -0.440 6.440 21 N -0.340 5.340 22 C 0.046 3.954 23 C -0.176 4.176 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.178 4.178 27 C -0.007 4.007 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.137 0.863 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.008 -31.413 1.240 32.992 hybrid contribution 1.566 1.658 -0.295 2.299 sum 11.574 -29.756 0.944 31.941 Atomic orbital electron populations 1.70138 1.07644 1.28657 1.47805 1.26037 0.96005 1.03035 0.93704 0.85087 0.77955 0.76186 0.79335 1.19022 1.20022 1.18904 1.23039 0.94867 0.92023 1.59103 0.90748 1.84635 1.13180 1.00819 1.97068 1.23077 1.00735 0.96644 1.03671 1.21112 0.97178 0.89768 1.04525 1.23056 0.96488 0.76724 1.03199 1.86468 1.40361 1.16624 1.83239 1.23505 0.84091 0.88829 0.71540 1.90692 1.19474 1.85197 1.46257 1.21931 0.99916 0.86316 1.02228 0.82163 1.22342 1.04747 0.93993 0.97005 1.21004 0.79833 0.89311 0.79477 1.90706 1.59545 1.56570 1.37138 1.48396 1.31096 1.13448 1.41093 1.22273 0.94943 0.79899 0.98317 1.22717 0.98730 0.94589 1.01552 1.22043 0.98241 0.96886 0.98471 1.22042 1.00376 0.93803 0.99444 1.22716 1.00914 0.97273 0.96919 1.22161 0.95805 0.85031 0.97733 0.91926 0.91228 0.91419 0.90331 0.90092 0.90385 0.90771 0.85128 0.87524 0.85684 0.92594 0.90005 0.92232 0.89782 0.89897 0.92318 0.90684 0.93283 0.86291 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.89 13.22 21.65 0.29 -53.60 16 2 C 0.02 0.98 5.49 84.86 0.47 1.44 16 3 Si 0.99 43.20 29.55 68.60 2.03 45.22 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -30.70 9.50 67.95 0.65 -30.05 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.19 -9.56 21.44 -56.49 -1.21 -10.77 16 10 C -0.09 -3.47 5.67 71.98 0.41 -3.06 16 11 C -0.09 -2.55 5.60 30.60 0.17 -2.38 16 12 C 0.08 1.94 5.47 71.98 0.39 2.34 16 13 O -0.35 -7.48 10.22 -51.45 -0.53 -8.00 16 14 C 0.48 8.78 7.18 71.24 0.51 9.29 16 15 O -0.53 -12.48 15.25 21.97 0.34 -12.14 16 16 C -0.08 -0.94 3.66 -10.48 -0.04 -0.98 16 17 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 18 C -0.14 -1.94 6.41 30.59 0.20 -1.74 16 19 C 0.52 9.65 7.24 87.90 0.64 10.28 16 20 O -0.56 -14.93 14.88 -3.02 -0.04 -14.98 16 21 N -0.61 -8.35 2.96 -786.74 -2.33 -10.68 16 22 C 0.15 1.76 3.58 46.31 0.17 1.92 16 23 C -0.14 -1.77 6.32 31.70 0.20 -1.57 16 24 C -0.12 -1.25 6.80 31.32 0.21 -1.04 16 25 C -0.12 -1.32 6.80 31.32 0.21 -1.10 16 26 C -0.14 -1.98 6.36 31.67 0.20 -1.78 16 27 C 0.12 1.17 6.69 86.83 0.58 1.75 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 30 H 0.07 2.50 8.14 -2.40 -0.02 2.48 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 1.82 8.13 -2.38 -0.02 1.80 16 34 H 0.07 1.77 8.13 -2.39 -0.02 1.76 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.57 7.89 -2.38 -0.02 1.56 16 37 H 0.13 0.84 8.11 -2.39 -0.02 0.82 16 38 H 0.06 1.09 6.17 -2.39 -0.01 1.07 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 1.02 6.62 -2.39 -0.02 1.00 16 46 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.08 1.09 6.96 -2.39 -0.02 1.07 16 Total: -1.00 -73.47 395.58 4.46 -69.01 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.95 Total: 12.62 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.96 Total: -16.68 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -2.04 Total: -64.28 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.24 Total: -35.12 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Total: -73.47 4.46 -69.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805367245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.935 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds