Wall clock time and date at job start Wed Apr 1 2020 00:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47035 * 269.99886 * 3 2 1 5 5 H 1.48505 * 109.47185 * 29.99389 * 3 2 1 6 6 H 1.48495 * 109.47539 * 149.99810 * 3 2 1 7 7 C 1.37876 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00626 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99485 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52783 * 60.07885 * 9 7 2 11 11 C 1.53040 * 109.49794 * 180.16247 * 9 7 2 12 12 C 1.53036 * 109.53951 * 181.31533 * 11 9 7 13 13 C 1.53621 * 109.24167 * 298.50862 * 12 11 9 14 14 N 1.46927 * 108.54298 * 54.85664 * 13 12 11 15 15 C 1.34777 * 120.62876 * 126.37008 * 14 13 12 16 16 O 1.21287 * 119.99836 * 179.71828 * 15 14 13 17 17 C 1.50696 * 120.00199 * 359.72199 * 15 14 13 18 18 C 1.50696 * 109.47083 * 180.02562 * 17 15 14 19 19 N 1.31327 * 120.47636 * 269.97445 * 18 17 15 20 20 N 1.28080 * 123.49565 * 180.02562 * 19 18 17 21 21 C 1.31971 * 123.27327 * 0.04508 * 20 19 18 22 22 O 1.35523 * 120.60881 * 180.02562 * 21 20 19 23 23 C 1.41140 * 118.78211 * 359.93546 * 21 20 19 24 24 C 1.39954 * 122.76726 * 180.02562 * 23 21 20 25 25 C 1.36340 * 119.39515 * 180.02562 * 24 23 21 26 26 C 1.39314 * 121.07641 * 0.02562 * 25 24 23 27 27 C 1.36305 * 121.06783 * 359.95824 * 26 25 24 28 28 C 1.40104 * 119.38420 * 0.02562 * 27 26 25 29 29 C 1.46923 * 118.74009 * 306.09298 * 14 13 12 30 30 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46034 * 301.33544 * 11 9 7 32 32 H 1.09004 * 109.45983 * 61.30487 * 11 9 7 33 33 H 1.09001 * 109.49935 * 58.58468 * 12 11 9 34 34 H 1.09006 * 109.49844 * 178.64913 * 12 11 9 35 35 H 1.09000 * 109.73984 * 295.11871 * 13 12 11 36 36 H 1.09006 * 109.66623 * 174.55095 * 13 12 11 37 37 H 1.08998 * 109.47541 * 59.99772 * 17 15 14 38 38 H 1.09008 * 109.46952 * 299.99761 * 17 15 14 39 39 H 0.96708 * 113.99984 * 269.91658 * 22 21 20 40 40 H 1.08001 * 120.30077 * 0.02562 * 24 23 21 41 41 H 1.08003 * 119.46129 * 180.02562 * 25 24 23 42 42 H 1.08003 * 119.46787 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.30860 * 179.74975 * 27 26 25 44 44 H 1.08998 * 109.58845 * 173.64786 * 29 14 13 45 45 H 1.09005 * 109.58685 * 294.07517 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6255 -2.5586 -0.8901 11 6 2.2451 -3.6628 0.0053 12 6 1.4813 -4.9885 -0.0278 13 6 0.6030 -5.0982 1.2278 14 7 -0.2563 -3.9088 1.3023 15 6 -1.5930 -4.0338 1.4214 16 8 -2.2911 -3.0441 1.4871 17 6 -2.2202 -5.4031 1.4729 18 6 -3.7150 -5.2662 1.6062 19 7 -4.2755 -5.2097 2.7926 20 7 -5.5382 -5.0943 2.9730 21 6 -6.4074 -5.0210 1.9826 22 8 -7.7332 -4.8989 2.2356 23 6 -5.9307 -5.0701 0.6550 24 6 -6.7775 -4.9988 -0.4570 25 6 -6.2427 -5.0534 -1.7099 26 6 -4.8684 -5.1793 -1.9004 27 6 -4.0150 -5.2511 -0.8400 28 6 -4.5301 -5.1978 0.4619 29 6 0.3697 -2.5806 1.2509 30 1 -0.4850 0.8401 -0.0004 31 1 2.8898 -3.5932 -0.8708 32 1 2.8536 -3.6169 0.9085 33 1 0.8535 -5.0246 -0.9182 34 1 2.1901 -5.8164 -0.0487 35 1 1.2340 -5.1493 2.1151 36 1 -0.0163 -5.9931 1.1652 37 1 -1.8272 -5.9508 2.3294 38 1 -1.9856 -5.9448 0.5565 39 1 -8.1982 -5.7433 2.3129 40 1 -7.8448 -4.9015 -0.3238 41 1 -6.8951 -4.9981 -2.5688 42 1 -4.4727 -5.2204 -2.9045 43 1 -2.9520 -5.3527 -1.0017 44 1 -0.4035 -1.8138 1.2036 45 1 0.9821 -2.4306 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855260085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:11 Heat of formation + Delta-G solvation = -2.436565 kcal Electronic energy + Delta-G solvation = -29737.437136 eV Core-core repulsion = 25720.419134 eV Total energy + Delta-G solvation = -4017.018002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65487 -39.48789 -38.25478 -37.84779 -36.71687 -33.82420 -33.31719 -31.81246 -31.75255 -30.79316 -29.90043 -28.52169 -25.15584 -24.89592 -24.50410 -23.91873 -22.06807 -21.79897 -19.91267 -19.29758 -18.73041 -18.24449 -17.78997 -16.90925 -16.34584 -16.15076 -15.49458 -15.05458 -15.03020 -14.94313 -14.54327 -14.21561 -14.11294 -13.72976 -13.66987 -13.31691 -12.80672 -12.71435 -12.59125 -12.43679 -12.40746 -12.30461 -11.94049 -11.81177 -11.66535 -11.10924 -11.01172 -10.91679 -10.52372 -10.43557 -10.35508 -10.25649 -9.92303 -9.52525 -9.42813 -9.34980 -9.14369 -8.93641 -8.48898 -8.44364 -7.78249 -6.01145 -4.10197 0.03794 0.48037 1.53432 2.72389 3.15829 3.20850 3.29860 3.37992 3.39939 3.50718 3.82046 4.01624 4.18578 4.38396 4.42057 4.50376 4.73358 4.85139 4.92460 4.95885 5.10772 5.21374 5.28661 5.29871 5.37737 5.44109 5.53337 5.61986 5.64040 5.67902 5.93084 6.00550 6.10034 6.12702 6.14089 6.27019 6.45758 6.55910 6.63898 6.82368 6.94117 7.11789 7.12624 7.25156 7.61916 7.84629 7.97293 8.20696 8.36885 8.79800 8.80417 8.94270 9.55885 11.03940 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003144 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.334707 B = 8904.368601 C = 9354.196368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.105 3.895 14 N -0.604 5.604 15 C 0.512 3.488 16 O -0.528 6.528 17 C -0.094 4.094 18 C 0.138 3.862 19 N -0.233 5.233 20 N -0.273 5.273 21 C 0.286 3.714 22 O -0.468 6.468 23 C -0.093 4.093 24 C -0.088 4.088 25 C -0.100 4.100 26 C -0.096 4.096 27 C -0.084 4.084 28 C -0.053 4.053 29 C 0.113 3.887 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.402 0.598 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.123 0.877 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 -17.992 -3.232 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.171 4.171 13 C -0.018 4.018 14 N -0.337 5.337 15 C 0.297 3.703 16 O -0.404 6.404 17 C -0.136 4.136 18 C -0.018 4.018 19 N -0.067 5.067 20 N -0.114 5.114 21 C 0.089 3.911 22 O -0.273 6.273 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.104 4.104 28 C -0.060 4.060 29 C -0.007 4.007 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.261 0.739 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.141 0.859 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.750 -16.723 -1.446 19.933 hybrid contribution 0.120 0.563 -1.525 1.630 sum -10.629 -16.160 -2.971 19.569 Atomic orbital electron populations 1.69879 1.05747 1.26878 1.49217 1.25050 0.94860 0.99270 0.94791 0.86605 0.79851 0.83544 0.78080 1.20688 1.21179 1.19867 1.21073 0.92908 0.90126 1.51976 0.92355 1.18959 0.92564 0.92310 0.93943 0.95398 1.21632 0.98587 0.94060 1.00638 1.22021 0.98642 0.99174 0.97305 1.21791 0.93657 0.87613 0.98763 1.48481 1.04901 1.09147 1.71178 1.19936 0.82746 0.89656 0.77944 1.90770 1.61076 1.39247 1.49318 1.20654 0.88541 0.98656 1.05724 1.22466 0.96616 0.93148 0.89614 1.72360 1.02435 1.10341 1.21539 1.72423 0.97331 1.11825 1.29850 1.20941 0.86408 0.95210 0.88502 1.84740 1.14554 1.34677 1.93342 1.18981 0.93900 1.02567 0.94706 1.20870 0.99973 0.98601 0.91311 1.21092 0.95487 0.97955 0.97404 1.21120 0.93352 0.97335 0.99682 1.21062 1.00833 0.97839 0.90668 1.18661 0.92250 0.99706 0.95393 1.22319 0.98697 0.81134 0.98574 0.92642 0.93011 0.93120 0.92148 0.92153 0.91675 0.91101 0.86480 0.87107 0.73947 0.84243 0.84893 0.84687 0.84176 0.85946 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 11.39 55.43 0.63 -25.04 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.95 8.56 -34.44 -0.29 -14.25 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.11 -2.10 5.10 -26.69 -0.14 -2.24 16 12 C -0.13 -1.93 6.10 -26.39 -0.16 -2.10 16 13 C 0.11 1.48 6.37 -3.49 -0.02 1.46 16 14 N -0.60 -11.53 2.97 -172.50 -0.51 -12.04 16 15 C 0.51 9.95 7.69 -10.99 -0.08 9.87 16 16 O -0.53 -13.09 15.45 5.55 0.09 -13.01 16 17 C -0.09 -1.31 3.97 -29.04 -0.12 -1.42 16 18 C 0.14 2.21 5.44 -81.89 -0.45 1.76 16 19 N -0.23 -4.16 11.33 33.90 0.38 -3.78 16 20 N -0.27 -4.73 11.44 30.80 0.35 -4.37 16 21 C 0.29 4.11 7.93 -16.39 -0.13 3.98 16 22 O -0.47 -5.12 12.98 -18.26 -0.24 -5.35 16 23 C -0.09 -1.27 5.76 -106.73 -0.61 -1.88 16 24 C -0.09 -0.90 9.63 -39.62 -0.38 -1.28 16 25 C -0.10 -0.90 9.95 -39.87 -0.40 -1.30 16 26 C -0.10 -0.94 9.95 -39.88 -0.40 -1.34 16 27 C -0.08 -1.02 9.35 -39.58 -0.37 -1.39 16 28 C -0.05 -0.77 5.75 -106.86 -0.61 -1.39 16 29 C 0.11 2.68 5.40 -3.71 -0.02 2.66 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 37 H 0.12 1.37 7.93 -51.93 -0.41 0.96 16 38 H 0.11 1.14 6.15 -51.92 -0.32 0.82 16 39 H 0.40 1.96 9.06 45.56 0.41 2.38 16 40 H 0.14 1.07 7.76 -52.49 -0.41 0.66 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.14 1.52 6.57 -52.49 -0.34 1.18 16 44 H 0.12 3.47 5.12 -51.93 -0.27 3.20 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -36.73 368.57 -8.24 -44.97 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.99 Total: 3.26 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -4.48 Total: -6.41 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.86 Total: -45.24 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.15 Total: -18.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.73 -8.24 -44.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.530 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds