Wall clock time and date at job start Wed Apr 1 2020 00:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47035 * 269.99886 * 3 2 1 5 5 H 1.48505 * 109.47185 * 29.99389 * 3 2 1 6 6 H 1.48495 * 109.47539 * 149.99810 * 3 2 1 7 7 C 1.37876 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00626 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99485 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52783 * 60.07885 * 9 7 2 11 11 C 1.53040 * 109.49794 * 180.16247 * 9 7 2 12 12 C 1.53036 * 109.53951 * 181.31533 * 11 9 7 13 13 C 1.53621 * 109.24167 * 298.50862 * 12 11 9 14 14 N 1.46927 * 108.54298 * 54.85664 * 13 12 11 15 15 C 1.34777 * 120.62876 * 126.37008 * 14 13 12 16 16 O 1.21287 * 119.99836 * 179.71828 * 15 14 13 17 17 C 1.50696 * 120.00199 * 359.72199 * 15 14 13 18 18 C 1.50696 * 109.47083 * 180.02562 * 17 15 14 19 19 N 1.31327 * 120.47636 * 269.97445 * 18 17 15 20 20 N 1.28080 * 123.49565 * 180.02562 * 19 18 17 21 21 C 1.31971 * 123.27327 * 0.04508 * 20 19 18 22 22 O 1.35523 * 120.60881 * 180.02562 * 21 20 19 23 23 C 1.41140 * 118.78211 * 359.93546 * 21 20 19 24 24 C 1.39954 * 122.76726 * 180.02562 * 23 21 20 25 25 C 1.36340 * 119.39515 * 180.02562 * 24 23 21 26 26 C 1.39314 * 121.07641 * 0.02562 * 25 24 23 27 27 C 1.36305 * 121.06783 * 359.95824 * 26 25 24 28 28 C 1.40104 * 119.38420 * 0.02562 * 27 26 25 29 29 C 1.46923 * 118.74009 * 306.09298 * 14 13 12 30 30 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46034 * 301.33544 * 11 9 7 32 32 H 1.09004 * 109.45983 * 61.30487 * 11 9 7 33 33 H 1.09001 * 109.49935 * 58.58468 * 12 11 9 34 34 H 1.09006 * 109.49844 * 178.64913 * 12 11 9 35 35 H 1.09000 * 109.73984 * 295.11871 * 13 12 11 36 36 H 1.09006 * 109.66623 * 174.55095 * 13 12 11 37 37 H 1.08998 * 109.47541 * 59.99772 * 17 15 14 38 38 H 1.09008 * 109.46952 * 299.99761 * 17 15 14 39 39 H 0.96708 * 113.99984 * 269.91658 * 22 21 20 40 40 H 1.08001 * 120.30077 * 0.02562 * 24 23 21 41 41 H 1.08003 * 119.46129 * 180.02562 * 25 24 23 42 42 H 1.08003 * 119.46787 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.30860 * 179.74975 * 27 26 25 44 44 H 1.08998 * 109.58845 * 173.64786 * 29 14 13 45 45 H 1.09005 * 109.58685 * 294.07517 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6255 -2.5586 -0.8901 11 6 2.2451 -3.6628 0.0053 12 6 1.4813 -4.9885 -0.0278 13 6 0.6030 -5.0982 1.2278 14 7 -0.2563 -3.9088 1.3023 15 6 -1.5930 -4.0338 1.4214 16 8 -2.2911 -3.0441 1.4871 17 6 -2.2202 -5.4031 1.4729 18 6 -3.7150 -5.2662 1.6062 19 7 -4.2755 -5.2097 2.7926 20 7 -5.5382 -5.0943 2.9730 21 6 -6.4074 -5.0210 1.9826 22 8 -7.7332 -4.8989 2.2356 23 6 -5.9307 -5.0701 0.6550 24 6 -6.7775 -4.9988 -0.4570 25 6 -6.2427 -5.0534 -1.7099 26 6 -4.8684 -5.1793 -1.9004 27 6 -4.0150 -5.2511 -0.8400 28 6 -4.5301 -5.1978 0.4619 29 6 0.3697 -2.5806 1.2509 30 1 -0.4850 0.8401 -0.0004 31 1 2.8898 -3.5932 -0.8708 32 1 2.8536 -3.6169 0.9085 33 1 0.8535 -5.0246 -0.9182 34 1 2.1901 -5.8164 -0.0487 35 1 1.2340 -5.1493 2.1151 36 1 -0.0163 -5.9931 1.1652 37 1 -1.8272 -5.9508 2.3294 38 1 -1.9856 -5.9448 0.5565 39 1 -8.1982 -5.7433 2.3129 40 1 -7.8448 -4.9015 -0.3238 41 1 -6.8951 -4.9981 -2.5688 42 1 -4.4727 -5.2204 -2.9045 43 1 -2.9520 -5.3527 -1.0017 44 1 -0.4035 -1.8138 1.2036 45 1 0.9821 -2.4306 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855260085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:10 Heat of formation + Delta-G solvation = -31.184036 kcal Electronic energy + Delta-G solvation = -29738.683720 eV Core-core repulsion = 25720.419134 eV Total energy + Delta-G solvation = -4018.264586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66177 -40.97271 -39.13959 -38.86477 -38.25507 -35.37229 -34.74661 -33.43282 -32.64013 -31.80068 -31.45243 -29.77362 -27.01223 -26.19715 -25.52766 -25.04490 -23.43503 -22.97468 -21.44744 -20.29162 -19.87008 -19.51431 -18.70489 -18.57720 -17.90939 -17.38593 -16.73857 -16.59785 -16.29632 -16.11485 -15.78449 -15.28428 -15.19865 -15.07374 -14.82518 -14.71967 -14.49461 -14.13860 -13.91822 -13.64111 -13.46441 -13.33183 -13.14306 -13.00179 -12.89598 -12.69892 -12.62410 -12.26799 -12.22997 -12.06893 -11.74557 -11.60056 -11.39721 -11.12310 -10.92301 -10.63487 -10.50528 -10.48085 -10.38924 -9.46327 -9.39663 -8.11913 -6.28482 -0.89824 -0.46360 0.62799 1.38065 1.40136 1.50120 1.70422 1.75554 2.18612 2.30088 2.41359 2.78030 2.94151 3.17103 3.24383 3.50641 3.62927 3.68832 3.87241 4.09481 4.14234 4.14904 4.17149 4.23373 4.35114 4.39525 4.46574 4.65265 4.70838 4.75565 4.80472 4.85771 4.86264 4.92098 5.11642 5.15680 5.27705 5.29920 5.31870 5.33862 5.40015 5.55356 5.66682 5.70403 5.92204 6.01536 6.34085 6.44224 6.66611 6.85213 7.31748 7.42270 7.70405 8.90732 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003144 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.334707 B = 8904.368601 C = 9354.196368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.041 3.959 10 H -0.009 1.009 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.097 3.903 14 N -0.605 5.605 15 C 0.506 3.494 16 O -0.594 6.594 17 C -0.079 4.079 18 C 0.122 3.878 19 N -0.270 5.270 20 N -0.321 5.321 21 C 0.295 3.705 22 O -0.469 6.469 23 C -0.117 4.117 24 C -0.088 4.088 25 C -0.092 4.092 26 C -0.087 4.087 27 C -0.106 4.106 28 C -0.076 4.076 29 C 0.126 3.874 30 H 0.257 0.743 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.428 0.572 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.148 0.852 44 H 0.072 0.928 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -20.644 -5.233 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.022 3.978 10 H 0.009 0.991 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.024 4.024 14 N -0.337 5.337 15 C 0.294 3.706 16 O -0.475 6.475 17 C -0.120 4.120 18 C -0.036 4.036 19 N -0.103 5.103 20 N -0.161 5.161 21 C 0.097 3.903 22 O -0.278 6.278 23 C -0.125 4.125 24 C -0.107 4.107 25 C -0.111 4.111 26 C -0.106 4.106 27 C -0.126 4.126 28 C -0.083 4.083 29 C 0.003 3.997 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.291 0.709 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.184 0.816 43 H 0.166 0.834 44 H 0.090 0.910 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.490 -19.451 -3.438 22.365 hybrid contribution -0.053 1.394 -1.014 1.724 sum -10.543 -18.057 -4.451 21.378 Atomic orbital electron populations 1.70091 1.07412 1.27048 1.50855 1.25866 0.95475 1.02845 0.94716 0.85623 0.78826 0.79329 0.78332 1.19853 1.21762 1.18584 1.21563 0.93310 0.91683 1.50799 0.92027 1.18880 0.93045 0.93694 0.92162 0.99066 1.21533 0.97684 0.94515 1.00788 1.21989 0.99075 0.97774 0.97443 1.22242 0.93962 0.86966 0.99256 1.48481 1.05620 1.08981 1.70634 1.20862 0.82363 0.91178 0.76169 1.90737 1.62577 1.42054 1.52139 1.20669 0.87255 0.95140 1.08904 1.22736 0.97527 0.93499 0.89823 1.72194 1.03087 1.11979 1.23014 1.72247 0.97746 1.14663 1.31491 1.21077 0.87118 0.93410 0.88682 1.84679 1.13090 1.36788 1.93280 1.19259 0.94284 1.03611 0.95317 1.21247 1.00974 0.97674 0.90820 1.21600 0.95705 0.95606 0.98149 1.21605 0.93693 0.94809 1.00462 1.21281 1.01819 0.99100 0.90358 1.18919 0.92828 1.00502 0.96010 1.21677 0.97048 0.83024 0.97941 0.93379 0.92935 0.92853 0.92152 0.87625 0.90283 0.86193 0.83887 0.82860 0.70927 0.81638 0.80895 0.81601 0.83396 0.90996 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.38 11.39 21.45 0.24 -56.13 16 2 C 0.01 0.58 5.30 84.65 0.45 1.03 16 3 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -29.34 8.56 25.60 0.22 -29.12 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 10 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 11 C -0.11 -3.92 5.10 30.62 0.16 -3.76 16 12 C -0.12 -3.19 6.10 30.82 0.19 -3.00 16 13 C 0.10 2.41 6.37 86.51 0.55 2.96 16 14 N -0.61 -23.12 2.97 -818.05 -2.43 -25.54 16 15 C 0.51 20.04 7.69 87.66 0.67 20.72 16 16 O -0.59 -31.38 15.45 -3.05 -0.05 -31.43 16 17 C -0.08 -2.10 3.97 29.10 0.12 -1.99 16 18 C 0.12 3.96 5.44 43.23 0.23 4.19 16 19 N -0.27 -10.08 11.33 -46.66 -0.53 -10.61 16 20 N -0.32 -11.63 11.44 -169.56 -1.94 -13.57 16 21 C 0.29 8.61 7.93 85.38 0.68 9.29 16 22 O -0.47 -10.00 12.98 -88.26 -1.15 -11.15 16 23 C -0.12 -3.12 5.76 -21.23 -0.12 -3.25 16 24 C -0.09 -1.59 9.63 22.24 0.21 -1.37 16 25 C -0.09 -1.31 9.95 22.09 0.22 -1.09 16 26 C -0.09 -1.44 9.95 22.08 0.22 -1.22 16 27 C -0.11 -2.41 9.35 22.27 0.21 -2.20 16 28 C -0.08 -2.19 5.75 -21.31 -0.12 -2.32 16 29 C 0.13 6.26 5.40 86.37 0.47 6.72 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.85 5.93 -2.38 -0.01 1.84 16 37 H 0.14 3.02 7.93 -2.39 -0.02 3.00 16 38 H 0.15 2.65 6.15 -2.38 -0.01 2.64 16 39 H 0.43 3.68 9.06 -74.05 -0.67 3.01 16 40 H 0.17 2.01 7.76 -2.91 -0.02 1.99 16 41 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.15 2.96 6.57 -2.91 -0.02 2.94 16 44 H 0.07 4.38 5.12 -2.39 -0.01 4.36 16 45 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -90.34 368.57 0.88 -89.46 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.37 Total: 14.62 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.32 Total: -2.39 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -4.65 Total: -105.86 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.19 Total: -42.58 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -90.34 0.88 -89.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.272 kcal (2) G-P(sol) polarization free energy of solvation -90.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds