Wall clock time and date at job start Wed Apr 1 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31259 * 1 3 3 Si 1.86797 * 119.99782 * 2 1 4 4 H 1.48498 * 109.47184 * 269.99798 * 3 2 1 5 5 H 1.48499 * 109.47232 * 29.99845 * 3 2 1 6 6 H 1.48502 * 109.47227 * 149.99968 * 3 2 1 7 7 C 1.39080 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00011 * 160.38396 * 7 2 1 9 9 N 1.37100 * 119.99923 * 340.38517 * 7 2 1 10 10 C 1.36234 * 119.71645 * 138.86145 * 9 7 2 11 11 C 1.50695 * 118.34949 * 0.02562 * 10 9 7 12 12 N 1.46898 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.48501 * 111.00231 * 285.39321 * 12 11 10 14 14 C 1.54263 * 104.74330 * 200.67273 * 13 12 11 15 15 H 1.09007 * 113.16601 * 260.63681 * 14 13 12 16 16 C 1.54391 * 108.77560 * 134.58908 * 14 13 12 17 17 O 1.44386 * 104.91561 * 224.67983 * 16 14 13 18 18 C 1.44381 * 105.25900 * 40.75631 * 17 16 14 19 19 C 1.54394 * 104.91682 * 319.24068 * 18 17 16 20 20 H 1.08999 * 112.68185 * 260.98306 * 19 18 17 21 21 C 1.48510 * 110.99866 * 169.99800 * 12 11 10 22 22 N 1.29832 * 123.30294 * 180.02562 * 10 9 7 23 23 C 1.35634 * 121.62608 * 359.97438 * 22 10 9 24 24 C 1.39638 * 121.62270 * 180.02562 * 23 22 10 25 25 C 1.37714 * 119.68906 * 179.97438 * 24 23 22 26 26 C 1.38864 * 120.83020 * 359.93730 * 25 24 23 27 27 C 1.37800 * 120.57137 * 0.02562 * 26 25 24 28 28 C 1.39361 * 119.51691 * 0.02562 * 27 26 25 29 29 C 1.35350 * 119.72131 * 318.88335 * 9 7 2 30 30 O 1.21717 * 121.28177 * 0.02562 * 29 9 7 31 31 H 0.96996 * 120.00071 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47007 * 300.01868 * 11 10 9 33 33 H 1.09003 * 109.47282 * 60.01744 * 11 10 9 34 34 H 1.09011 * 110.38300 * 319.48771 * 13 12 11 35 35 H 1.08994 * 110.38578 * 81.84918 * 13 12 11 36 36 H 1.09004 * 110.35480 * 105.81549 * 16 14 13 37 37 H 1.08999 * 110.44030 * 343.58148 * 16 14 13 38 38 H 1.09001 * 110.35144 * 200.38518 * 18 17 16 39 39 H 1.09003 * 110.43869 * 78.14495 * 18 17 16 40 40 H 1.08997 * 110.38264 * 278.14378 * 21 12 11 41 41 H 1.09000 * 110.38135 * 40.40112 * 21 12 11 42 42 H 1.08002 * 120.15151 * 359.95845 * 24 23 22 43 43 H 1.08005 * 119.57751 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.71628 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.23871 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.4940 2.0464 -1.4000 5 1 1.4439 2.6527 0.7000 6 1 3.5441 1.4403 0.7000 7 6 2.0080 -1.2045 0.0005 8 1 3.0410 -1.2317 -0.3134 9 7 1.3822 -2.3571 0.3996 10 6 1.5969 -3.5144 -0.2863 11 6 2.5266 -3.4816 -1.4719 12 7 2.6153 -4.8239 -2.0620 13 6 3.4461 -5.7216 -1.2199 14 6 3.8855 -6.8551 -2.1696 15 1 3.2832 -7.7579 -2.0673 16 6 5.3929 -7.1187 -1.9647 17 8 5.9349 -7.2325 -3.2981 18 6 5.2751 -6.2028 -4.0656 19 6 3.8057 -6.2347 -3.5929 20 1 3.1579 -6.7901 -4.2712 21 6 3.3258 -4.7863 -3.3655 22 7 1.0410 -4.6443 0.0300 23 6 0.1941 -4.7497 1.0842 24 6 -0.4034 -5.9650 1.4247 25 6 -1.2569 -6.0268 2.5037 26 6 -1.5309 -4.8949 3.2601 27 6 -0.9531 -3.6843 2.9446 28 6 -0.0872 -3.5998 1.8559 29 6 0.5559 -2.3356 1.4715 30 8 0.3540 -1.3089 2.0932 31 1 -0.4850 0.8400 0.0004 32 1 2.1429 -2.7827 -2.2152 33 1 3.5168 -3.1606 -1.1484 34 1 4.3162 -5.1869 -0.8388 35 1 2.8559 -6.1236 -0.3965 36 1 5.5440 -8.0469 -1.4135 37 1 5.8567 -6.2854 -1.4369 38 1 5.3356 -6.4265 -5.1307 39 1 5.7193 -5.2294 -3.8575 40 1 2.6447 -4.4828 -4.1605 41 1 4.1761 -4.1063 -3.3149 42 1 -0.1973 -6.8522 0.8444 43 1 -1.7184 -6.9676 2.7652 44 1 -2.2028 -4.9640 4.1029 45 1 -1.1697 -2.8076 3.5368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872320770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:57 Heat of formation + Delta-G solvation = -1.569954 kcal Electronic energy + Delta-G solvation = -30297.954319 eV Core-core repulsion = 26280.973896 eV Total energy + Delta-G solvation = -4016.980423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64798 -40.20041 -37.65723 -37.14260 -35.92233 -33.77277 -32.20741 -31.83576 -30.71288 -30.35898 -29.03618 -26.58868 -26.11401 -25.79098 -23.34178 -22.86084 -21.98428 -21.22803 -20.45658 -19.83627 -18.76656 -17.81020 -16.96569 -16.87818 -15.80454 -15.61436 -15.51897 -15.09799 -14.88492 -14.71196 -14.28324 -14.11111 -13.87530 -13.76916 -13.61584 -13.30378 -12.99230 -12.66015 -12.30569 -12.27906 -12.04479 -11.88462 -11.73068 -11.33872 -11.23482 -11.15362 -11.07509 -10.99301 -10.88992 -10.77640 -10.76311 -10.58732 -10.47950 -9.92626 -9.56248 -8.94119 -8.78653 -8.36719 -8.34673 -8.16165 -7.04951 -6.70357 -4.55206 1.50306 1.67259 3.00287 3.10272 3.13573 3.24183 3.68953 3.84620 3.90889 4.02434 4.31688 4.46862 4.63811 4.68279 4.87552 4.92212 4.96305 5.09865 5.13232 5.23059 5.27731 5.39034 5.47913 5.55198 5.56225 5.58658 5.65703 5.70086 5.75533 5.80132 5.82162 5.88862 6.07450 6.09075 6.13311 6.19346 6.34406 6.48035 6.65126 6.69250 6.81375 7.01632 7.04433 7.08119 7.15591 7.19735 7.50685 7.59517 8.10463 8.45186 8.70722 9.19187 9.50378 10.30846 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.004556 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.033667 B = 6144.356704 C = 8707.651934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.080 3.920 3 Si 0.927 3.073 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.386 4.386 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.363 3.637 11 C 0.114 3.886 12 N -0.482 5.482 13 C 0.044 3.956 14 C -0.119 4.119 15 H 0.099 0.901 16 C 0.047 3.953 17 O -0.379 6.379 18 C 0.048 3.952 19 C -0.119 4.119 20 H 0.099 0.901 21 C 0.035 3.965 22 N -0.543 5.543 23 C 0.167 3.833 24 C -0.130 4.130 25 C -0.091 4.091 26 C -0.176 4.176 27 C -0.039 4.039 28 C -0.210 4.210 29 C 0.519 3.481 30 O -0.503 6.503 31 H 0.280 0.720 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -10.436 -4.651 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.138 4.138 3 Si 0.751 3.249 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.513 4.513 8 H 0.123 0.877 9 N -0.056 5.056 10 C 0.100 3.900 11 C -0.016 4.016 12 N -0.205 5.205 13 C -0.083 4.083 14 C -0.138 4.138 15 H 0.117 0.883 16 C -0.030 4.030 17 O -0.298 6.298 18 C -0.029 4.029 19 C -0.139 4.139 20 H 0.117 0.883 21 C -0.093 4.093 22 N -0.270 5.270 23 C 0.051 3.949 24 C -0.150 4.150 25 C -0.110 4.110 26 C -0.196 4.196 27 C -0.058 4.058 28 C -0.217 4.217 29 C 0.314 3.686 30 O -0.377 6.377 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.324 -10.620 -4.717 12.782 hybrid contribution 0.576 2.105 0.722 2.299 sum 5.900 -8.515 -3.995 11.103 Atomic orbital electron populations 1.69808 1.07193 1.29525 1.35961 1.25396 0.94961 1.00433 0.92973 0.85962 0.79932 0.80473 0.78488 1.19833 1.20163 1.18817 1.19529 0.96833 0.84251 1.50684 0.87696 1.42258 1.34480 1.08438 1.20389 1.22600 0.93551 0.83087 0.90800 1.20906 0.96350 0.90894 0.93455 1.65195 1.44967 1.08728 1.01608 1.23238 0.95505 0.92881 0.96714 1.23290 0.96242 0.99612 0.94670 0.88262 1.23638 0.92072 1.02108 0.85142 1.89088 1.64652 1.54642 1.21376 1.23618 0.90773 0.91768 0.96765 1.23264 0.96745 0.96757 0.97088 0.88295 1.23233 0.97330 0.94941 0.93838 1.68461 1.16792 1.22801 1.18953 1.18849 0.92910 0.92500 0.90653 1.20590 0.99554 0.96281 0.98584 1.20968 0.97251 0.97872 0.94949 1.20829 1.03872 0.92915 1.01964 1.20878 0.93044 0.97410 0.94503 1.20854 1.04955 0.94479 1.01453 1.18193 0.81736 0.88201 0.80485 1.90661 1.60952 1.33413 1.52662 0.90929 0.87572 0.92351 0.94371 0.88149 0.89132 0.92141 0.89197 0.92130 0.89815 0.93638 0.85766 0.86562 0.86681 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.94 11.54 55.50 0.64 -21.30 16 2 C 0.08 2.03 4.36 -17.48 -0.08 1.95 16 3 Si 0.93 19.48 29.60 -169.99 -5.03 14.44 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -9.60 8.24 -14.88 -0.12 -9.72 16 8 H 0.11 2.35 7.07 -52.49 -0.37 1.98 16 9 N -0.35 -8.81 2.68 -59.56 -0.16 -8.97 16 10 C 0.36 7.87 7.33 -154.87 -1.14 6.74 16 11 C 0.11 1.98 3.95 -4.98 -0.02 1.97 16 12 N -0.48 -7.27 4.88 -231.66 -1.13 -8.40 16 13 C 0.04 0.61 5.43 -2.28 -0.01 0.60 16 14 C -0.12 -1.35 4.21 -87.91 -0.37 -1.72 16 15 H 0.10 1.10 8.14 -51.92 -0.42 0.67 16 16 C 0.05 0.50 7.17 37.89 0.27 0.78 16 17 O -0.38 -4.57 11.65 -35.23 -0.41 -4.98 16 18 C 0.05 0.48 7.17 37.89 0.27 0.75 16 19 C -0.12 -1.27 4.21 -87.91 -0.37 -1.64 16 20 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 21 C 0.03 0.41 5.99 -2.27 -0.01 0.40 16 22 N -0.54 -11.47 7.96 -8.10 -0.06 -11.54 16 23 C 0.17 3.59 6.63 -84.49 -0.56 3.03 16 24 C -0.13 -2.33 10.03 -39.25 -0.39 -2.72 16 25 C -0.09 -1.44 10.00 -39.54 -0.40 -1.83 16 26 C -0.18 -2.99 10.02 -39.51 -0.40 -3.38 16 27 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 28 C -0.21 -4.92 5.89 -104.78 -0.62 -5.53 16 29 C 0.52 13.87 6.93 -12.47 -0.09 13.78 16 30 O -0.50 -14.72 14.27 5.17 0.07 -14.65 16 31 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.11 1.88 7.98 -51.93 -0.41 1.47 16 33 H 0.06 0.96 7.21 -51.93 -0.37 0.59 16 34 H 0.04 0.52 6.75 -51.92 -0.35 0.17 16 35 H 0.10 1.56 6.99 -51.93 -0.36 1.20 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.64 7.14 -51.93 -0.37 0.27 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.58 7.14 -51.93 -0.37 0.21 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.51 6.99 -51.93 -0.36 0.14 16 42 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 45 H 0.12 2.50 7.83 -52.49 -0.41 2.09 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -31.08 359.45 -10.98 -42.05 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.91 Total: 5.66 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.41 Total: 2.26 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.71 Total: -50.21 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.34 Total: -19.63 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.08 -10.98 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872320770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.482 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds