Wall clock time and date at job start Wed Apr 1 2020 00:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31259 * 1 3 3 Si 1.86797 * 119.99782 * 2 1 4 4 H 1.48498 * 109.47184 * 269.99798 * 3 2 1 5 5 H 1.48499 * 109.47232 * 29.99845 * 3 2 1 6 6 H 1.48502 * 109.47227 * 149.99968 * 3 2 1 7 7 C 1.39080 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00011 * 160.38396 * 7 2 1 9 9 N 1.37100 * 119.99923 * 340.38517 * 7 2 1 10 10 C 1.36234 * 119.71645 * 138.86145 * 9 7 2 11 11 C 1.50695 * 118.34949 * 0.02562 * 10 9 7 12 12 N 1.46898 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.48501 * 111.00231 * 285.39321 * 12 11 10 14 14 C 1.54263 * 104.74330 * 200.67273 * 13 12 11 15 15 H 1.09007 * 113.16601 * 260.63681 * 14 13 12 16 16 C 1.54391 * 108.77560 * 134.58908 * 14 13 12 17 17 O 1.44386 * 104.91561 * 224.67983 * 16 14 13 18 18 C 1.44381 * 105.25900 * 40.75631 * 17 16 14 19 19 C 1.54394 * 104.91682 * 319.24068 * 18 17 16 20 20 H 1.08999 * 112.68185 * 260.98306 * 19 18 17 21 21 C 1.48510 * 110.99866 * 169.99800 * 12 11 10 22 22 N 1.29832 * 123.30294 * 180.02562 * 10 9 7 23 23 C 1.35634 * 121.62608 * 359.97438 * 22 10 9 24 24 C 1.39638 * 121.62270 * 180.02562 * 23 22 10 25 25 C 1.37714 * 119.68906 * 179.97438 * 24 23 22 26 26 C 1.38864 * 120.83020 * 359.93730 * 25 24 23 27 27 C 1.37800 * 120.57137 * 0.02562 * 26 25 24 28 28 C 1.39361 * 119.51691 * 0.02562 * 27 26 25 29 29 C 1.35350 * 119.72131 * 318.88335 * 9 7 2 30 30 O 1.21717 * 121.28177 * 0.02562 * 29 9 7 31 31 H 0.96996 * 120.00071 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47007 * 300.01868 * 11 10 9 33 33 H 1.09003 * 109.47282 * 60.01744 * 11 10 9 34 34 H 1.09011 * 110.38300 * 319.48771 * 13 12 11 35 35 H 1.08994 * 110.38578 * 81.84918 * 13 12 11 36 36 H 1.09004 * 110.35480 * 105.81549 * 16 14 13 37 37 H 1.08999 * 110.44030 * 343.58148 * 16 14 13 38 38 H 1.09001 * 110.35144 * 200.38518 * 18 17 16 39 39 H 1.09003 * 110.43869 * 78.14495 * 18 17 16 40 40 H 1.08997 * 110.38264 * 278.14378 * 21 12 11 41 41 H 1.09000 * 110.38135 * 40.40112 * 21 12 11 42 42 H 1.08002 * 120.15151 * 359.95845 * 24 23 22 43 43 H 1.08005 * 119.57751 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.71628 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.23871 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.4940 2.0464 -1.4000 5 1 1.4439 2.6527 0.7000 6 1 3.5441 1.4403 0.7000 7 6 2.0080 -1.2045 0.0005 8 1 3.0410 -1.2317 -0.3134 9 7 1.3822 -2.3571 0.3996 10 6 1.5969 -3.5144 -0.2863 11 6 2.5266 -3.4816 -1.4719 12 7 2.6153 -4.8239 -2.0620 13 6 3.4461 -5.7216 -1.2199 14 6 3.8855 -6.8551 -2.1696 15 1 3.2832 -7.7579 -2.0673 16 6 5.3929 -7.1187 -1.9647 17 8 5.9349 -7.2325 -3.2981 18 6 5.2751 -6.2028 -4.0656 19 6 3.8057 -6.2347 -3.5929 20 1 3.1579 -6.7901 -4.2712 21 6 3.3258 -4.7863 -3.3655 22 7 1.0410 -4.6443 0.0300 23 6 0.1941 -4.7497 1.0842 24 6 -0.4034 -5.9650 1.4247 25 6 -1.2569 -6.0268 2.5037 26 6 -1.5309 -4.8949 3.2601 27 6 -0.9531 -3.6843 2.9446 28 6 -0.0872 -3.5998 1.8559 29 6 0.5559 -2.3356 1.4715 30 8 0.3540 -1.3089 2.0932 31 1 -0.4850 0.8400 0.0004 32 1 2.1429 -2.7827 -2.2152 33 1 3.5168 -3.1606 -1.1484 34 1 4.3162 -5.1869 -0.8388 35 1 2.8559 -6.1236 -0.3965 36 1 5.5440 -8.0469 -1.4135 37 1 5.8567 -6.2854 -1.4369 38 1 5.3356 -6.4265 -5.1307 39 1 5.7193 -5.2294 -3.8575 40 1 2.6447 -4.4828 -4.1605 41 1 4.1761 -4.1063 -3.3149 42 1 -0.1973 -6.8522 0.8444 43 1 -1.7184 -6.9676 2.7652 44 1 -2.2028 -4.9640 4.1029 45 1 -1.1697 -2.8076 3.5368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872320770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:56 Heat of formation + Delta-G solvation = -21.498945 kcal Electronic energy + Delta-G solvation = -30298.818505 eV Core-core repulsion = 26280.973896 eV Total energy + Delta-G solvation = -4017.844609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23782 -41.27464 -39.22357 -38.56690 -37.39822 -35.53411 -33.73510 -33.29155 -31.92535 -31.61269 -30.50774 -27.97054 -27.58413 -27.04076 -24.82041 -24.22447 -23.13478 -22.66965 -21.87235 -20.76943 -20.51492 -19.47691 -18.54956 -17.80724 -17.50827 -16.78951 -16.60389 -16.46945 -16.30399 -16.14565 -15.68277 -15.58287 -15.40368 -15.10056 -14.93470 -14.67949 -14.48614 -13.94935 -13.84281 -13.65323 -13.46302 -13.14375 -13.01717 -12.97569 -12.79289 -12.60172 -12.47396 -12.29256 -12.15441 -11.90908 -11.78394 -11.77097 -11.57537 -11.28978 -10.80858 -10.75931 -10.50961 -10.19764 -9.90941 -9.32739 -8.79062 -8.52958 -6.48677 -0.09270 0.09518 1.32051 1.39863 1.49279 1.55087 2.00389 2.26187 2.44160 2.87828 3.01531 3.14190 3.25762 3.38594 3.50173 3.73031 3.81165 3.93411 4.04843 4.09844 4.17646 4.23577 4.26451 4.31036 4.39681 4.41270 4.49471 4.59580 4.66294 4.73381 4.76308 4.82581 4.86900 4.89160 4.98830 5.12117 5.14095 5.18949 5.25497 5.32493 5.37278 5.55452 5.57320 5.77961 5.83425 5.95063 5.97226 6.05519 6.30815 6.62095 6.85440 7.43173 7.63952 8.45575 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.004556 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.033667 B = 6144.356704 C = 8707.651934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.249 1.249 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.403 4.403 8 H 0.122 0.878 9 N -0.370 5.370 10 C 0.352 3.648 11 C 0.124 3.876 12 N -0.496 5.496 13 C 0.047 3.953 14 C -0.113 4.113 15 H 0.104 0.896 16 C 0.049 3.951 17 O -0.395 6.395 18 C 0.048 3.952 19 C -0.113 4.113 20 H 0.109 0.891 21 C 0.035 3.965 22 N -0.528 5.528 23 C 0.137 3.863 24 C -0.124 4.124 25 C -0.072 4.072 26 C -0.150 4.150 27 C -0.068 4.068 28 C -0.239 4.239 29 C 0.494 3.506 30 O -0.554 6.554 31 H 0.275 0.725 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.151 0.849 43 H 0.171 0.829 44 H 0.157 0.843 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -13.468 -5.268 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.180 4.180 3 Si 0.813 3.187 4 H -0.173 1.173 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.139 0.861 9 N -0.075 5.075 10 C 0.088 3.912 11 C -0.006 4.006 12 N -0.220 5.220 13 C -0.080 4.080 14 C -0.133 4.133 15 H 0.122 0.878 16 C -0.028 4.028 17 O -0.314 6.314 18 C -0.028 4.028 19 C -0.132 4.132 20 H 0.127 0.873 21 C -0.092 4.092 22 N -0.254 5.254 23 C 0.022 3.978 24 C -0.144 4.144 25 C -0.092 4.092 26 C -0.169 4.169 27 C -0.088 4.088 28 C -0.246 4.246 29 C 0.290 3.710 30 O -0.432 6.432 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.189 0.811 44 H 0.174 0.826 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.821 -13.732 -5.368 15.852 hybrid contribution 0.311 2.736 1.000 2.929 sum 6.132 -10.997 -4.368 13.327 Atomic orbital electron populations 1.69932 1.09069 1.29773 1.39113 1.26396 0.95501 1.03911 0.92181 0.85003 0.78339 0.75855 0.79515 1.17263 1.21502 1.18151 1.19949 0.97599 0.84692 1.50670 0.86059 1.42367 1.34999 1.09407 1.20740 1.23395 0.93862 0.82198 0.91727 1.20824 0.95600 0.92413 0.91787 1.65157 1.46492 1.07329 1.02983 1.23163 0.94867 0.93403 0.96599 1.23240 0.96813 0.98794 0.94419 0.87772 1.23660 0.91298 1.02856 0.84951 1.89080 1.65074 1.55307 1.21932 1.23718 0.89882 0.91637 0.97612 1.23256 0.97480 0.95662 0.96812 0.87311 1.23314 0.97553 0.96256 0.92120 1.68547 1.16003 1.22313 1.18528 1.19342 0.94070 0.93465 0.90951 1.21006 0.98745 0.95442 0.99203 1.21568 0.95253 0.99489 0.92849 1.21342 1.01999 0.91363 1.02187 1.21007 0.94256 0.99023 0.94518 1.21010 1.06418 0.93908 1.03274 1.18869 0.82420 0.88969 0.80755 1.90584 1.63113 1.35092 1.54434 0.91507 0.88169 0.91510 0.94405 0.90230 0.87771 0.92232 0.87322 0.91779 0.89288 0.92703 0.83180 0.81114 0.82553 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.79 11.54 21.68 0.25 -49.54 16 2 C 0.03 1.69 4.36 84.98 0.37 2.06 16 3 Si 0.99 41.43 29.60 68.60 2.03 43.46 16 4 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.40 -20.93 8.24 84.07 0.69 -20.23 16 8 H 0.12 5.60 7.07 -2.91 -0.02 5.58 16 9 N -0.37 -19.50 2.68 -460.25 -1.23 -20.73 16 10 C 0.35 15.76 7.33 137.94 1.01 16.77 16 11 C 0.12 4.37 3.95 85.56 0.34 4.71 16 12 N -0.50 -14.60 4.88 -886.83 -4.32 -18.92 16 13 C 0.05 1.26 5.43 86.42 0.47 1.73 16 14 C -0.11 -2.35 4.21 -9.04 -0.04 -2.38 16 15 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 16 C 0.05 0.94 7.17 72.45 0.52 1.46 16 17 O -0.39 -8.57 11.65 -148.98 -1.74 -10.30 16 18 C 0.05 0.83 7.17 72.46 0.52 1.35 16 19 C -0.11 -2.13 4.21 -9.04 -0.04 -2.16 16 20 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 21 C 0.03 0.77 5.99 86.42 0.52 1.29 16 22 N -0.53 -22.52 7.96 -179.53 -1.43 -23.95 16 23 C 0.14 5.85 6.63 39.65 0.26 6.11 16 24 C -0.12 -4.08 10.03 22.48 0.23 -3.85 16 25 C -0.07 -1.95 10.00 22.30 0.22 -1.72 16 26 C -0.15 -4.60 10.02 22.32 0.22 -4.37 16 27 C -0.07 -2.85 9.68 22.44 0.22 -2.64 16 28 C -0.24 -11.62 5.89 -19.97 -0.12 -11.74 16 29 C 0.49 28.06 6.93 86.44 0.60 28.66 16 30 O -0.55 -34.94 14.27 -4.40 -0.06 -35.00 16 31 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.10 3.64 7.98 -2.39 -0.02 3.62 16 33 H 0.07 2.22 7.21 -2.39 -0.02 2.20 16 34 H 0.04 1.00 6.75 -2.38 -0.02 0.98 16 35 H 0.08 2.43 6.99 -2.39 -0.02 2.41 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.16 7.14 -2.39 -0.02 1.14 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.07 7.14 -2.39 -0.02 1.05 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.12 6.99 -2.39 -0.02 1.11 16 42 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 43 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.11 4.72 7.83 -2.91 -0.02 4.69 16 Total: -1.00 -73.77 359.45 0.51 -73.26 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 1.02 Total: 26.68 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 6.00 Total: 15.04 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -6.74 Total: -113.14 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.80 Total: -45.31 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -73.77 0.51 -73.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872320770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.761 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds