Wall clock time and date at job start Wed Apr 1 2020 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99947 * 2 1 4 4 H 1.48502 * 109.47130 * 240.00062 * 3 2 1 5 5 H 1.48498 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47104 * 120.00387 * 3 2 1 7 7 C 1.37877 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00468 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.63893 * 56.85642 * 9 7 2 11 11 C 1.55158 * 110.72153 * 180.02562 * 9 7 2 12 12 C 1.54911 * 101.58147 * 154.03906 * 11 9 7 13 13 N 1.47429 * 104.83180 * 322.99250 * 12 11 9 14 14 C 1.34773 * 125.64357 * 204.08696 * 13 12 11 15 15 O 1.21586 * 119.99961 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00111 * 0.02860 * 14 13 12 17 17 C 1.46501 * 119.99910 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47300 * 179.97438 * 17 16 14 19 19 C 1.36175 * 120.19392 * 259.99895 * 18 17 16 20 20 C 1.39311 * 120.86963 * 179.72056 * 19 18 17 21 21 C 1.36107 * 121.06799 * 0.02886 * 20 19 18 22 22 C 1.40560 * 119.74993 * 359.96888 * 21 20 19 23 23 N 1.33689 * 121.08307 * 179.97438 * 22 21 20 24 24 C 1.31078 * 121.31917 * 180.02562 * 23 22 21 25 25 C 1.39334 * 121.75684 * 0.02562 * 24 23 22 26 26 C 1.36575 * 119.93708 * 0.02562 * 25 24 23 27 27 C 1.40387 * 120.19150 * 79.72155 * 18 17 16 28 28 C 1.47014 * 108.70269 * 24.35339 * 13 12 11 29 29 H 0.96992 * 120.00151 * 359.97438 * 1 2 3 30 30 H 0.96697 * 114.00514 * 303.14424 * 10 9 7 31 31 H 1.09005 * 111.00579 * 35.96809 * 11 9 7 32 32 H 1.09001 * 111.03802 * 272.13079 * 11 9 7 33 33 H 1.08999 * 110.36507 * 204.14659 * 12 11 9 34 34 H 1.09003 * 110.35889 * 81.82866 * 12 11 9 35 35 H 0.96997 * 120.00230 * 359.97438 * 16 14 13 36 36 H 1.08998 * 109.47668 * 59.99229 * 17 16 14 37 37 H 1.09006 * 109.47246 * 299.99658 * 17 16 14 38 38 H 1.07997 * 119.56339 * 359.69569 * 19 18 17 39 39 H 1.07998 * 119.46512 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.12762 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.12192 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.03050 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.92409 * 180.02562 * 26 25 24 44 44 H 1.09008 * 109.88275 * 118.13256 * 28 13 12 45 45 H 1.09004 * 109.88471 * 239.29309 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 2.2333 -3.7002 -0.0005 12 6 1.3741 -4.8048 0.6638 13 7 0.5906 -4.1032 1.6969 14 6 0.0656 -4.6673 2.8026 15 8 -0.5661 -3.9892 3.5897 16 7 0.2408 -5.9831 3.0359 17 6 -0.3294 -6.5962 4.2381 18 6 0.0072 -8.0649 4.2610 19 6 -0.9159 -8.9852 3.8669 20 6 -0.6179 -10.3461 3.8769 21 6 0.6020 -10.7950 4.2805 22 6 1.5815 -9.8758 4.6946 23 7 2.7882 -10.2874 5.0967 24 6 3.7048 -9.4344 5.4843 25 6 3.4698 -8.0610 5.4975 26 6 2.2578 -7.5731 5.1000 27 6 1.2761 -8.4920 4.6831 28 6 0.4714 -2.6877 1.3180 29 1 -0.4850 0.8400 0.0004 30 1 -0.2690 -1.8415 -1.1659 31 1 3.1182 -3.4812 0.5971 32 1 2.5104 -3.9792 -1.0172 33 1 2.0139 -5.5599 1.1204 34 1 0.7106 -5.2620 -0.0703 35 1 0.7445 -6.5242 2.4079 36 1 -1.4122 -6.4719 4.2308 37 1 0.0855 -6.1142 5.1235 38 1 -1.8920 -8.6559 3.5427 39 1 -1.3669 -11.0563 3.5593 40 1 0.8169 -11.8534 4.2818 41 1 4.6677 -9.8060 5.8025 42 1 4.2454 -7.3831 5.8219 43 1 2.0585 -6.5116 5.1036 44 1 -0.5776 -2.4305 1.1707 45 1 0.9039 -2.0581 2.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876383264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:51 Heat of formation + Delta-G solvation = -17.297519 kcal Electronic energy + Delta-G solvation = -29148.759979 eV Core-core repulsion = 25131.097557 eV Total energy + Delta-G solvation = -4017.662421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22173 -39.67664 -37.81846 -37.25880 -35.10524 -34.30468 -33.14672 -32.17465 -30.86118 -30.80768 -29.84479 -27.88272 -26.42157 -24.76804 -24.36577 -23.86836 -22.61176 -21.09770 -19.74990 -19.51108 -18.45786 -17.74825 -17.29679 -17.18968 -17.00570 -15.93220 -15.39255 -15.06195 -14.94799 -14.67755 -14.56791 -14.38348 -14.19709 -13.74596 -13.68957 -13.26228 -13.11571 -12.93607 -12.87675 -12.56274 -12.15323 -11.98095 -11.83010 -11.65995 -11.56860 -11.41632 -11.05828 -10.84651 -10.79192 -10.67517 -10.53558 -10.18156 -9.78292 -9.69911 -9.35881 -9.07202 -8.94023 -8.67948 -8.53407 -8.33033 -7.80692 -6.30480 -4.39179 0.06029 0.53477 1.64994 2.58167 3.15757 3.22464 3.27306 3.29334 3.66836 3.84716 3.99755 4.19537 4.25096 4.43851 4.46174 4.53004 4.59975 4.74887 4.86603 4.96932 5.04433 5.11108 5.35095 5.37559 5.45865 5.60937 5.66899 5.69225 5.75176 5.79480 5.80741 6.00337 6.04964 6.07713 6.17109 6.27624 6.48315 6.53220 6.62876 6.69846 6.85036 6.95101 7.22289 7.30104 7.57535 7.61708 7.72415 8.00007 8.46630 8.63936 9.05438 9.29734 9.42634 10.77346 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002533 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.962697 B =11050.101902 C =11539.779551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.250 3.750 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.749 5.749 17 C 0.180 3.820 18 C -0.080 4.080 19 C -0.095 4.095 20 C -0.101 4.101 21 C -0.089 4.089 22 C 0.124 3.876 23 N -0.477 5.477 24 C 0.132 3.868 25 C -0.175 4.175 26 C -0.053 4.053 27 C -0.089 4.089 28 C 0.120 3.880 29 H 0.272 0.728 30 H 0.386 0.614 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.062 0.938 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -19.482 8.449 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.397 6.397 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.407 5.407 17 C 0.055 3.945 18 C -0.082 4.082 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.108 4.108 22 C 0.002 3.998 23 N -0.184 5.184 24 C -0.041 4.041 25 C -0.194 4.194 26 C -0.079 4.079 27 C -0.091 4.091 28 C -0.002 4.002 29 H 0.082 0.918 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.080 0.920 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.426 -20.318 8.940 22.330 hybrid contribution 0.204 2.044 -0.088 2.056 sum 2.631 -18.274 8.852 20.474 Atomic orbital electron populations 1.69562 1.06019 1.28126 1.49750 1.25077 0.95057 0.99797 0.93328 0.86440 0.79528 0.82023 0.78799 1.19984 1.21046 1.20024 1.21477 0.93656 0.90112 1.52373 0.91559 1.19475 0.85855 0.92005 0.81786 1.86066 1.51396 1.53447 1.48782 1.22731 0.97635 0.94875 1.00171 1.22238 0.93826 0.95582 0.90342 1.47936 1.55190 1.12295 1.21030 1.15495 0.80080 0.81161 0.81509 1.90895 1.46646 1.62038 1.47918 1.45156 1.60815 1.08364 1.26325 1.19931 0.99302 0.86898 0.88329 1.19760 0.93045 0.95619 0.99736 1.20946 0.99756 0.92739 0.97910 1.20924 0.96761 0.95708 0.98648 1.20838 0.92088 0.99563 0.98329 1.18885 0.92185 0.90725 0.97955 1.68055 1.00858 1.38582 1.10954 1.22979 0.97981 0.89730 0.93406 1.21943 0.98391 0.97146 1.01967 1.21643 0.92405 1.00330 0.93508 1.18708 0.94950 0.94082 1.01370 1.22918 1.01443 0.76637 0.99180 0.91814 0.76168 0.90596 0.90561 0.92759 0.91972 0.77172 0.90453 0.90767 0.85002 0.84973 0.84676 0.82367 0.84342 0.84013 0.91989 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.67 10.97 55.43 0.61 -23.06 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.89 8.12 -34.44 -0.28 -14.17 16 8 H 0.07 1.67 7.76 -52.49 -0.41 1.27 16 9 C 0.25 5.96 0.86 -89.93 -0.08 5.88 16 10 O -0.59 -14.70 13.07 -35.23 -0.46 -15.16 16 11 C -0.12 -2.27 6.23 -24.58 -0.15 -2.42 16 12 C 0.10 1.78 6.56 -2.53 -0.02 1.76 16 13 N -0.63 -12.71 3.33 -176.23 -0.59 -13.30 16 14 C 0.72 13.97 8.49 -86.92 -0.74 13.24 16 15 O -0.60 -13.91 16.67 5.29 0.09 -13.83 16 16 N -0.75 -10.76 5.51 -66.41 -0.37 -11.13 16 17 C 0.18 2.20 5.07 -5.19 -0.03 2.17 16 18 C -0.08 -0.84 5.25 -104.56 -0.55 -1.39 16 19 C -0.09 -0.85 9.58 -39.92 -0.38 -1.23 16 20 C -0.10 -0.80 9.94 -39.95 -0.40 -1.20 16 21 C -0.09 -0.83 9.98 -39.47 -0.39 -1.23 16 22 C 0.12 1.39 6.60 -84.85 -0.56 0.83 16 23 N -0.48 -5.37 10.34 -10.97 -0.11 -5.48 16 24 C 0.13 1.19 11.14 -17.47 -0.19 0.99 16 25 C -0.17 -1.53 10.03 -39.77 -0.40 -1.93 16 26 C -0.05 -0.55 9.38 -39.22 -0.37 -0.92 16 27 C -0.09 -0.98 5.74 -106.80 -0.61 -1.60 16 28 C 0.12 2.89 5.54 -3.06 -0.02 2.88 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 10.01 6.98 45.56 0.32 10.33 16 31 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.39 5.05 6.94 -40.82 -0.28 4.77 16 36 H 0.08 0.96 7.98 -51.93 -0.41 0.55 16 37 H 0.07 0.94 7.02 -51.93 -0.36 0.57 16 38 H 0.13 0.99 8.01 -52.49 -0.42 0.57 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.14 1.48 6.69 -52.49 -0.35 1.13 16 44 H 0.06 1.64 8.07 -51.92 -0.42 1.22 16 45 H 0.06 1.66 7.82 -51.93 -0.41 1.26 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -31.27 373.97 -10.69 -41.96 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.22 Total: 15.71 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -5.26 Total: 3.40 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.46 Total: -52.97 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.37 Total: -28.99 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.27 -10.69 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876383264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.666 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds