Wall clock time and date at job start Wed Apr 1 2020 00:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99947 * 2 1 4 4 H 1.48502 * 109.47130 * 240.00062 * 3 2 1 5 5 H 1.48498 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47104 * 120.00387 * 3 2 1 7 7 C 1.37877 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00468 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.63893 * 56.85642 * 9 7 2 11 11 C 1.55158 * 110.72153 * 180.02562 * 9 7 2 12 12 C 1.54911 * 101.58147 * 154.03906 * 11 9 7 13 13 N 1.47429 * 104.83180 * 322.99250 * 12 11 9 14 14 C 1.34773 * 125.64357 * 204.08696 * 13 12 11 15 15 O 1.21586 * 119.99961 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00111 * 0.02860 * 14 13 12 17 17 C 1.46501 * 119.99910 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47300 * 179.97438 * 17 16 14 19 19 C 1.36175 * 120.19392 * 259.99895 * 18 17 16 20 20 C 1.39311 * 120.86963 * 179.72056 * 19 18 17 21 21 C 1.36107 * 121.06799 * 0.02886 * 20 19 18 22 22 C 1.40560 * 119.74993 * 359.96888 * 21 20 19 23 23 N 1.33689 * 121.08307 * 179.97438 * 22 21 20 24 24 C 1.31078 * 121.31917 * 180.02562 * 23 22 21 25 25 C 1.39334 * 121.75684 * 0.02562 * 24 23 22 26 26 C 1.36575 * 119.93708 * 0.02562 * 25 24 23 27 27 C 1.40387 * 120.19150 * 79.72155 * 18 17 16 28 28 C 1.47014 * 108.70269 * 24.35339 * 13 12 11 29 29 H 0.96992 * 120.00151 * 359.97438 * 1 2 3 30 30 H 0.96697 * 114.00514 * 303.14424 * 10 9 7 31 31 H 1.09005 * 111.00579 * 35.96809 * 11 9 7 32 32 H 1.09001 * 111.03802 * 272.13079 * 11 9 7 33 33 H 1.08999 * 110.36507 * 204.14659 * 12 11 9 34 34 H 1.09003 * 110.35889 * 81.82866 * 12 11 9 35 35 H 0.96997 * 120.00230 * 359.97438 * 16 14 13 36 36 H 1.08998 * 109.47668 * 59.99229 * 17 16 14 37 37 H 1.09006 * 109.47246 * 299.99658 * 17 16 14 38 38 H 1.07997 * 119.56339 * 359.69569 * 19 18 17 39 39 H 1.07998 * 119.46512 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.12762 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.12192 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.03050 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.92409 * 180.02562 * 26 25 24 44 44 H 1.09008 * 109.88275 * 118.13256 * 28 13 12 45 45 H 1.09004 * 109.88471 * 239.29309 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 2.2333 -3.7002 -0.0005 12 6 1.3741 -4.8048 0.6638 13 7 0.5906 -4.1032 1.6969 14 6 0.0656 -4.6673 2.8026 15 8 -0.5661 -3.9892 3.5897 16 7 0.2408 -5.9831 3.0359 17 6 -0.3294 -6.5962 4.2381 18 6 0.0072 -8.0649 4.2610 19 6 -0.9159 -8.9852 3.8669 20 6 -0.6179 -10.3461 3.8769 21 6 0.6020 -10.7950 4.2805 22 6 1.5815 -9.8758 4.6946 23 7 2.7882 -10.2874 5.0967 24 6 3.7048 -9.4344 5.4843 25 6 3.4698 -8.0610 5.4975 26 6 2.2578 -7.5731 5.1000 27 6 1.2761 -8.4920 4.6831 28 6 0.4714 -2.6877 1.3180 29 1 -0.4850 0.8400 0.0004 30 1 -0.2690 -1.8415 -1.1659 31 1 3.1182 -3.4812 0.5971 32 1 2.5104 -3.9792 -1.0172 33 1 2.0139 -5.5599 1.1204 34 1 0.7106 -5.2620 -0.0703 35 1 0.7445 -6.5242 2.4079 36 1 -1.4122 -6.4719 4.2308 37 1 0.0855 -6.1142 5.1235 38 1 -1.8920 -8.6559 3.5427 39 1 -1.3669 -11.0563 3.5593 40 1 0.8169 -11.8534 4.2818 41 1 4.6677 -9.8060 5.8025 42 1 4.2454 -7.3831 5.8219 43 1 2.0585 -6.5116 5.1036 44 1 -0.5776 -2.4305 1.1707 45 1 0.9039 -2.0581 2.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876383264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:50 Heat of formation + Delta-G solvation = -38.761013 kcal Electronic energy + Delta-G solvation = -29149.690706 eV Core-core repulsion = 25131.097557 eV Total energy + Delta-G solvation = -4018.593148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99010 -41.19776 -39.24542 -38.29259 -36.18032 -36.10449 -34.16886 -34.13026 -32.01287 -31.51969 -31.17638 -29.61097 -27.71959 -26.34312 -25.15795 -24.57126 -24.16492 -21.94953 -21.43668 -21.07117 -19.41182 -19.11124 -18.84284 -18.03524 -17.92755 -17.44568 -16.92089 -16.77873 -16.20909 -15.72843 -15.63172 -15.38200 -15.22984 -15.02583 -14.78473 -14.65847 -14.51942 -14.29951 -13.99393 -13.76899 -13.48532 -13.47879 -13.27438 -12.83743 -12.74411 -12.56076 -12.51438 -12.32874 -12.31097 -12.23731 -12.10133 -11.58447 -11.34005 -11.19684 -10.63661 -10.50775 -10.32520 -10.28908 -9.75744 -9.43438 -9.27088 -8.26884 -6.42786 -0.66365 -0.16198 0.86792 1.43012 1.43834 1.51840 1.66357 2.01476 2.10437 2.37970 2.99098 2.99537 3.19491 3.34839 3.38946 3.76281 3.79543 3.81835 3.85946 4.05385 4.07641 4.15374 4.22051 4.31430 4.35587 4.49847 4.55117 4.58979 4.60372 4.70771 4.85803 4.94127 5.02617 5.08072 5.11847 5.12974 5.21758 5.34489 5.37381 5.38530 5.46413 5.48025 5.57564 5.75562 5.86557 5.99879 6.12530 6.63632 6.90415 7.00444 7.29242 7.38815 7.51226 8.79227 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002533 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.962697 B =11050.101902 C =11539.779551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.234 3.766 10 O -0.590 6.590 11 C -0.111 4.111 12 C 0.109 3.891 13 N -0.633 5.633 14 C 0.713 3.287 15 O -0.640 6.640 16 N -0.725 5.725 17 C 0.183 3.817 18 C -0.092 4.092 19 C -0.089 4.089 20 C -0.094 4.094 21 C -0.095 4.095 22 C 0.101 3.899 23 N -0.498 5.498 24 C 0.128 3.872 25 C -0.169 4.169 26 C -0.071 4.071 27 C -0.100 4.100 28 C 0.139 3.861 29 H 0.271 0.729 30 H 0.378 0.622 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.148 0.852 41 H 0.189 0.811 42 H 0.163 0.837 43 H 0.135 0.865 44 H 0.026 0.974 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -21.606 8.385 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.194 3.806 10 O -0.399 6.399 11 C -0.148 4.148 12 C -0.013 4.013 13 N -0.369 5.369 14 C 0.415 3.585 15 O -0.523 6.523 16 N -0.382 5.382 17 C 0.060 3.940 18 C -0.093 4.093 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.019 4.019 23 N -0.206 5.206 24 C -0.044 4.044 25 C -0.188 4.188 26 C -0.097 4.097 27 C -0.102 4.102 28 C 0.015 3.985 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.181 0.819 40 H 0.166 0.834 41 H 0.206 0.794 42 H 0.180 0.820 43 H 0.153 0.847 44 H 0.045 0.955 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.738 -22.516 8.864 24.485 hybrid contribution -0.192 2.629 -0.016 2.636 sum 3.546 -19.887 8.848 22.054 Atomic orbital electron populations 1.69671 1.07135 1.28640 1.50247 1.25828 0.95809 1.02864 0.93063 0.85509 0.78338 0.78325 0.78888 1.19230 1.20977 1.19801 1.21826 0.93998 0.91336 1.52420 0.91345 1.19695 0.86343 0.93507 0.81072 1.86055 1.51434 1.53029 1.49382 1.22723 0.97114 0.93502 1.01495 1.22365 0.93769 0.95345 0.89820 1.47853 1.55933 1.11113 1.22033 1.15665 0.79615 0.82420 0.80781 1.90860 1.48536 1.63541 1.49323 1.44970 1.59870 1.06352 1.26961 1.19966 0.98943 0.88140 0.86977 1.19549 0.93665 0.94406 1.01728 1.21216 0.99939 0.93069 0.96508 1.21227 0.96923 0.95716 0.97510 1.21111 0.92216 1.00065 0.98011 1.19200 0.92839 0.91119 0.98783 1.68095 1.01316 1.39410 1.11809 1.23520 0.98727 0.89735 0.92453 1.22232 0.98306 0.97611 1.00679 1.21700 0.93271 1.00013 0.94754 1.18806 0.95244 0.94358 1.01787 1.22401 0.98872 0.78658 0.98584 0.91931 0.77085 0.89786 0.89226 0.88569 0.91224 0.75814 0.90603 0.91450 0.83486 0.81881 0.83420 0.79387 0.81988 0.84728 0.95531 0.94998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 10.97 21.45 0.24 -49.62 16 2 C 0.02 1.31 5.28 84.65 0.45 1.75 16 3 Si 0.96 41.80 29.54 68.60 2.03 43.83 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.56 -29.04 8.12 25.60 0.21 -28.83 16 8 H 0.07 3.44 7.76 -2.91 -0.02 3.42 16 9 C 0.23 11.29 0.86 -10.35 -0.01 11.28 16 10 O -0.59 -29.95 13.07 -148.98 -1.95 -31.90 16 11 C -0.11 -4.14 6.23 31.99 0.20 -3.94 16 12 C 0.11 3.52 6.56 86.85 0.57 4.09 16 13 N -0.63 -25.58 3.33 -829.72 -2.76 -28.34 16 14 C 0.71 27.93 8.49 179.06 1.52 29.45 16 15 O -0.64 -30.78 16.67 -3.99 -0.07 -30.84 16 16 N -0.72 -20.11 5.51 -482.29 -2.66 -22.76 16 17 C 0.18 4.39 5.07 85.63 0.43 4.83 16 18 C -0.09 -1.82 5.25 -19.82 -0.10 -1.92 16 19 C -0.09 -1.39 9.58 22.05 0.21 -1.18 16 20 C -0.09 -1.24 9.94 22.03 0.22 -1.03 16 21 C -0.10 -1.58 9.98 22.34 0.22 -1.36 16 22 C 0.10 2.14 6.60 40.29 0.27 2.40 16 23 N -0.50 -10.44 10.34 -188.63 -1.95 -12.39 16 24 C 0.13 2.05 11.14 85.07 0.95 3.00 16 25 C -0.17 -2.66 10.03 22.14 0.22 -2.44 16 26 C -0.07 -1.41 9.38 22.50 0.21 -1.20 16 27 C -0.10 -2.09 5.74 -21.28 -0.12 -2.21 16 28 C 0.14 6.90 5.54 86.73 0.48 7.38 16 29 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.38 20.26 6.98 -74.06 -0.52 19.74 16 31 H 0.08 2.99 8.03 -2.38 -0.02 2.97 16 32 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.10 2.33 7.30 -2.39 -0.02 2.31 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.41 9.52 6.94 -92.71 -0.64 8.88 16 36 H 0.08 1.86 7.98 -2.39 -0.02 1.84 16 37 H 0.07 1.72 7.02 -2.38 -0.02 1.71 16 38 H 0.15 1.83 8.01 -2.91 -0.02 1.80 16 39 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.13 2.78 6.69 -2.91 -0.02 2.76 16 44 H 0.03 1.47 8.07 -2.38 -0.02 1.45 16 45 H 0.03 1.74 7.82 -2.38 -0.02 1.73 16 Total: -1.00 -69.99 373.97 -1.31 -71.31 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -0.12 Total: 40.64 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.92 Total: 20.08 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -7.13 Total: -113.11 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -2.01 Total: -62.74 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -69.99 -1.31 -71.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876383264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.547 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds