Wall clock time and date at job start Wed Apr 1 2020 00:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48506 * 109.47062 * 269.99804 * 3 2 1 5 5 H 1.48494 * 109.47271 * 30.00237 * 3 2 1 6 6 H 1.48501 * 109.46951 * 150.00339 * 3 2 1 7 7 C 1.37879 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99936 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47537 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99821 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.46498 * 109.46745 * 180.02562 * 15 13 12 17 17 C 1.34808 * 119.84670 * 269.97563 * 16 15 13 18 18 N 1.30427 * 121.76910 * 179.97438 * 17 16 15 19 19 C 1.34416 * 121.33282 * 0.02630 * 18 17 16 20 20 C 1.48138 * 120.23692 * 180.02562 * 19 18 17 21 21 C 1.39475 * 120.13142 * 179.72164 * 20 19 18 22 22 C 1.37985 * 119.86357 * 179.69766 * 21 20 19 23 23 C 1.38345 * 120.13190 * 0.58164 * 22 21 20 24 24 C 1.38348 * 120.27409 * 359.71757 * 23 22 21 25 25 C 1.37985 * 120.13271 * 359.97438 * 24 23 22 26 26 C 1.38442 * 119.52098 * 359.75703 * 19 18 17 27 27 C 1.34952 * 119.85288 * 89.99983 * 16 15 13 28 28 O 1.22023 * 120.64733 * 359.97438 * 27 16 15 29 29 H 0.97006 * 119.99725 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46884 * 59.99885 * 9 7 2 31 31 H 1.08993 * 109.47274 * 299.99945 * 9 7 2 32 32 H 1.09001 * 109.47017 * 59.99775 * 10 9 7 33 33 H 1.09007 * 109.47319 * 300.00448 * 10 9 7 34 34 H 1.08994 * 109.46984 * 59.99608 * 11 10 9 35 35 H 1.09003 * 109.46573 * 299.99791 * 11 10 9 36 36 H 0.96994 * 120.00038 * 359.97438 * 12 11 10 37 37 H 1.08994 * 109.47541 * 60.00276 * 15 13 12 38 38 H 1.08994 * 109.47402 * 299.99789 * 15 13 12 39 39 H 1.07994 * 119.11845 * 0.02562 * 17 16 15 40 40 H 1.07996 * 120.06524 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.93329 * 180.30045 * 22 21 20 42 42 H 1.08005 * 119.86592 * 179.69644 * 23 22 21 43 43 H 1.08000 * 119.93512 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.07339 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.81216 * 180.25398 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 7 6.0397 -4.0180 -0.0014 13 6 7.3648 -4.2643 -0.0020 14 8 8.1529 -3.3425 -0.0016 15 6 7.8670 -5.6852 -0.0019 16 7 9.3320 -5.6852 -0.0020 17 6 10.0028 -5.6858 -1.1713 18 7 11.3064 -5.6853 -1.2151 19 6 12.0435 -5.6848 -0.0911 20 6 13.5228 -5.6837 -0.1692 21 6 14.2856 -5.6772 0.9985 22 6 15.6631 -5.6826 0.9194 23 6 16.2879 -5.6821 -0.3150 24 6 15.5368 -5.6822 -1.4768 25 6 14.1585 -5.6833 -1.4107 26 6 11.4102 -5.6796 1.1400 27 6 10.0038 -5.6851 1.1684 28 8 9.4030 -5.6846 2.2305 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6802 -0.8911 32 1 3.6577 -3.1507 -0.8907 33 1 3.6584 -3.1504 0.8892 34 1 5.9147 -2.1229 0.8889 35 1 5.9147 -2.1230 -0.8910 36 1 5.4093 -4.7552 -0.0014 37 1 7.5033 -6.1992 -0.8916 38 1 7.5041 -6.1988 0.8883 39 1 9.4460 -5.6858 -2.0966 40 1 13.7989 -5.6734 1.9626 41 1 16.2548 -5.6825 1.8229 42 1 17.3664 -5.6813 -0.3719 43 1 16.0302 -5.6823 -2.4375 44 1 13.5732 -5.6838 -2.3182 45 1 11.9820 -5.6749 2.0562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931969176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:03 Heat of formation + Delta-G solvation = -7.359809 kcal Electronic energy + Delta-G solvation = -27379.151653 eV Core-core repulsion = 23361.920163 eV Total energy + Delta-G solvation = -4017.231490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19485 -39.84949 -39.33831 -37.79888 -35.97643 -35.39863 -33.45007 -32.44827 -31.66628 -31.40144 -30.44577 -28.98228 -26.94648 -25.30315 -24.50260 -22.94008 -22.69193 -21.78327 -21.01240 -20.20052 -18.65665 -18.10813 -17.74048 -17.55577 -16.84170 -16.74898 -15.85101 -15.74593 -15.40129 -15.35345 -15.21443 -14.62799 -14.40683 -14.40003 -14.18852 -13.80971 -13.77300 -13.59240 -13.35187 -12.95142 -12.79815 -12.74949 -12.05501 -11.98022 -11.83006 -11.53851 -11.38553 -11.15789 -10.94661 -10.47737 -10.41772 -10.34827 -10.07202 -9.87513 -9.73055 -9.37835 -9.30246 -9.26752 -9.07630 -8.59408 -8.56950 -6.10207 -4.09301 -0.13878 0.97984 0.99399 1.71067 1.95705 2.37123 2.97490 3.25073 3.28196 3.36314 3.40305 3.45130 3.62365 3.95599 4.15262 4.30878 4.40907 4.46032 4.51611 4.56058 4.63903 4.72846 4.88660 4.98572 5.05711 5.20430 5.23813 5.25389 5.42813 5.50801 5.54958 5.63296 5.80908 5.91053 6.01185 6.05867 6.10970 6.16806 6.26741 6.35356 6.50634 6.55313 6.70314 7.16391 7.29969 7.34458 7.37551 7.54792 7.71446 8.01896 8.45606 8.93177 9.51934 11.02910 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.001678 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.791828 B =16683.133470 C =17090.545366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.717 5.717 13 C 0.496 3.504 14 O -0.532 6.532 15 C 0.067 3.933 16 N -0.506 5.506 17 C 0.392 3.608 18 N -0.535 5.535 19 C 0.220 3.780 20 C -0.060 4.060 21 C -0.090 4.090 22 C -0.126 4.126 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.071 4.071 26 C -0.280 4.280 27 C 0.527 3.473 28 O -0.533 6.533 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.403 0.597 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.206 0.794 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.262 -18.036 -4.076 35.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.369 5.369 13 C 0.279 3.721 14 O -0.408 6.408 15 C -0.060 4.060 16 N -0.223 5.223 17 C 0.107 3.893 18 N -0.257 5.257 19 C 0.102 3.898 20 C -0.061 4.061 21 C -0.109 4.109 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.148 4.148 25 C -0.090 4.090 26 C -0.305 4.305 27 C 0.327 3.673 28 O -0.411 6.411 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.222 0.778 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 30.800 -17.230 -3.988 35.516 hybrid contribution -0.477 0.695 0.710 1.102 sum 30.323 -16.535 -3.278 34.693 Atomic orbital electron populations 1.69909 1.06309 1.27000 1.50833 1.25021 0.94747 0.99227 0.94407 0.86784 0.80420 0.83559 0.78590 1.20226 1.21304 1.18937 1.21080 0.89241 0.94537 1.51305 0.90973 1.19503 0.97349 0.91369 0.96701 1.21717 0.90307 1.01220 1.01876 1.21721 0.96362 0.80571 1.02166 1.46061 1.06054 1.10554 1.74183 1.20541 0.83382 0.90719 0.77427 1.90772 1.55269 1.45666 1.49119 1.21912 0.78884 0.97153 1.08031 1.46354 1.08779 1.58532 1.08659 1.24865 0.89146 0.85414 0.89828 1.68332 1.03625 1.23988 1.29710 1.19943 0.93042 0.88620 0.88204 1.18438 0.89242 1.04170 0.94242 1.21331 0.94028 0.97765 0.97769 1.21097 0.94201 1.01017 0.98120 1.21360 1.00194 0.97968 0.92589 1.21194 0.93819 1.01003 0.98738 1.21404 0.94432 0.95600 0.97514 1.23072 0.92901 1.14604 0.99893 1.17037 0.88841 0.78461 0.82968 1.90983 1.70331 1.51584 1.28191 0.92654 0.96299 0.96729 0.91966 0.91944 0.91603 0.91540 0.76293 0.85297 0.84868 0.77759 0.85256 0.85440 0.85743 0.85492 0.84408 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 11 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 12 N -0.72 -8.46 5.56 -60.30 -0.33 -8.79 16 13 C 0.50 6.16 7.90 -10.98 -0.09 6.07 16 14 O -0.53 -9.15 16.43 5.56 0.09 -9.06 16 15 C 0.07 0.53 5.84 -5.19 -0.03 0.50 16 16 N -0.51 -5.07 2.06 -122.57 -0.25 -5.33 16 17 C 0.39 3.12 11.45 -90.65 -1.04 2.08 16 18 N -0.54 -5.15 9.53 -10.80 -0.10 -5.25 16 19 C 0.22 2.31 6.75 -82.60 -0.56 1.75 16 20 C -0.06 -0.55 5.88 -104.91 -0.62 -1.17 16 21 C -0.09 -0.71 9.43 -39.21 -0.37 -1.08 16 22 C -0.13 -0.82 10.03 -39.63 -0.40 -1.21 16 23 C -0.10 -0.62 10.04 -39.50 -0.40 -1.02 16 24 C -0.13 -0.84 10.03 -39.63 -0.40 -1.24 16 25 C -0.07 -0.58 9.59 -39.21 -0.38 -0.95 16 26 C -0.28 -3.23 9.47 -38.59 -0.37 -3.59 16 27 C 0.53 7.00 7.43 -15.26 -0.11 6.89 16 28 O -0.53 -8.88 16.76 4.90 0.08 -8.80 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.40 3.42 8.47 -40.82 -0.35 3.07 16 37 H 0.13 0.34 8.00 -51.93 -0.42 -0.07 16 38 H 0.13 1.03 7.44 -51.93 -0.39 0.64 16 39 H 0.21 0.68 8.01 -52.49 -0.42 0.26 16 40 H 0.13 0.87 6.24 -52.49 -0.33 0.54 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.12 0.46 8.06 -52.48 -0.42 0.04 16 43 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.14 1.05 7.56 -52.49 -0.40 0.65 16 45 H 0.16 1.57 6.26 -52.49 -0.33 1.24 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -38.56 386.25 -9.98 -48.54 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.93 Total: -0.63 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -5.45 Total: -6.75 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.08 Total: -46.03 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.17 Total: -17.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.56 -9.98 -48.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931969176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -38.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds