Wall clock time and date at job start Wed Apr 1 2020 00:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48506 * 109.47062 * 269.99804 * 3 2 1 5 5 H 1.48494 * 109.47271 * 30.00237 * 3 2 1 6 6 H 1.48501 * 109.46951 * 150.00339 * 3 2 1 7 7 C 1.37879 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99936 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47537 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99821 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.46498 * 109.46745 * 180.02562 * 15 13 12 17 17 C 1.34808 * 119.84670 * 269.97563 * 16 15 13 18 18 N 1.30427 * 121.76910 * 179.97438 * 17 16 15 19 19 C 1.34416 * 121.33282 * 0.02630 * 18 17 16 20 20 C 1.48138 * 120.23692 * 180.02562 * 19 18 17 21 21 C 1.39475 * 120.13142 * 179.72164 * 20 19 18 22 22 C 1.37985 * 119.86357 * 179.69766 * 21 20 19 23 23 C 1.38345 * 120.13190 * 0.58164 * 22 21 20 24 24 C 1.38348 * 120.27409 * 359.71757 * 23 22 21 25 25 C 1.37985 * 120.13271 * 359.97438 * 24 23 22 26 26 C 1.38442 * 119.52098 * 359.75703 * 19 18 17 27 27 C 1.34952 * 119.85288 * 89.99983 * 16 15 13 28 28 O 1.22023 * 120.64733 * 359.97438 * 27 16 15 29 29 H 0.97006 * 119.99725 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46884 * 59.99885 * 9 7 2 31 31 H 1.08993 * 109.47274 * 299.99945 * 9 7 2 32 32 H 1.09001 * 109.47017 * 59.99775 * 10 9 7 33 33 H 1.09007 * 109.47319 * 300.00448 * 10 9 7 34 34 H 1.08994 * 109.46984 * 59.99608 * 11 10 9 35 35 H 1.09003 * 109.46573 * 299.99791 * 11 10 9 36 36 H 0.96994 * 120.00038 * 359.97438 * 12 11 10 37 37 H 1.08994 * 109.47541 * 60.00276 * 15 13 12 38 38 H 1.08994 * 109.47402 * 299.99789 * 15 13 12 39 39 H 1.07994 * 119.11845 * 0.02562 * 17 16 15 40 40 H 1.07996 * 120.06524 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.93329 * 180.30045 * 22 21 20 42 42 H 1.08005 * 119.86592 * 179.69644 * 23 22 21 43 43 H 1.08000 * 119.93512 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.07339 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.81216 * 180.25398 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 7 6.0397 -4.0180 -0.0014 13 6 7.3648 -4.2643 -0.0020 14 8 8.1529 -3.3425 -0.0016 15 6 7.8670 -5.6852 -0.0019 16 7 9.3320 -5.6852 -0.0020 17 6 10.0028 -5.6858 -1.1713 18 7 11.3064 -5.6853 -1.2151 19 6 12.0435 -5.6848 -0.0911 20 6 13.5228 -5.6837 -0.1692 21 6 14.2856 -5.6772 0.9985 22 6 15.6631 -5.6826 0.9194 23 6 16.2879 -5.6821 -0.3150 24 6 15.5368 -5.6822 -1.4768 25 6 14.1585 -5.6833 -1.4107 26 6 11.4102 -5.6796 1.1400 27 6 10.0038 -5.6851 1.1684 28 8 9.4030 -5.6846 2.2305 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6802 -0.8911 32 1 3.6577 -3.1507 -0.8907 33 1 3.6584 -3.1504 0.8892 34 1 5.9147 -2.1229 0.8889 35 1 5.9147 -2.1230 -0.8910 36 1 5.4093 -4.7552 -0.0014 37 1 7.5033 -6.1992 -0.8916 38 1 7.5041 -6.1988 0.8883 39 1 9.4460 -5.6858 -2.0966 40 1 13.7989 -5.6734 1.9626 41 1 16.2548 -5.6825 1.8229 42 1 17.3664 -5.6813 -0.3719 43 1 16.0302 -5.6823 -2.4375 44 1 13.5732 -5.6838 -2.3182 45 1 11.9820 -5.6749 2.0562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931969176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:02 Heat of formation + Delta-G solvation = -32.576241 kcal Electronic energy + Delta-G solvation = -27380.245119 eV Core-core repulsion = 23361.920163 eV Total energy + Delta-G solvation = -4018.324956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.99157 -40.74755 -40.04537 -38.67995 -37.16049 -36.34159 -35.20325 -33.44346 -33.05222 -31.98513 -31.21199 -30.00606 -28.35165 -26.06328 -25.32110 -24.43667 -23.24820 -22.46509 -22.29392 -21.55821 -19.38829 -19.12037 -18.78916 -18.55497 -18.23733 -17.42867 -16.86430 -16.85339 -16.53824 -16.07982 -15.96792 -15.85672 -15.68260 -15.29734 -15.03289 -14.79057 -14.77806 -14.43349 -14.32167 -14.04796 -13.89560 -13.80216 -13.62502 -13.25939 -12.75843 -12.71478 -12.33935 -12.18755 -12.05007 -11.94718 -11.80861 -11.61125 -11.40738 -11.34524 -11.15781 -11.01309 -10.77226 -10.19219 -10.02195 -9.89736 -9.33482 -8.30574 -6.34179 -0.85103 0.37243 0.46749 0.90775 1.22680 1.34686 1.37346 1.42844 1.48266 2.09062 2.34727 2.50593 2.82545 2.98350 3.05351 3.29607 3.51928 3.66671 3.73374 3.98745 4.06236 4.09266 4.09680 4.17653 4.19753 4.30446 4.37377 4.47477 4.48302 4.58977 4.64983 4.86269 4.87327 4.95331 5.02729 5.13111 5.19219 5.31237 5.36480 5.47762 5.52667 5.54511 5.55934 5.58549 5.63996 6.00769 6.26199 6.41785 6.63192 6.66613 6.74116 7.10071 7.30815 8.85662 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.001678 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.791828 B =16683.133470 C =17090.545366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.040 0.960 9 C -0.014 4.014 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.706 5.706 13 C 0.495 3.505 14 O -0.584 6.584 15 C 0.072 3.928 16 N -0.507 5.507 17 C 0.398 3.602 18 N -0.547 5.547 19 C 0.233 3.767 20 C -0.088 4.088 21 C -0.101 4.101 22 C -0.132 4.132 23 C -0.099 4.099 24 C -0.133 4.133 25 C -0.079 4.079 26 C -0.315 4.315 27 C 0.515 3.485 28 O -0.583 6.583 29 H 0.266 0.734 30 H 0.015 0.985 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.421 0.579 37 H 0.195 0.805 38 H 0.137 0.863 39 H 0.258 0.742 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.695 -18.773 -5.925 38.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.058 0.942 9 C -0.052 4.052 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.358 5.358 13 C 0.281 3.719 14 O -0.464 6.464 15 C -0.053 4.053 16 N -0.222 5.222 17 C 0.116 3.884 18 N -0.269 5.269 19 C 0.113 3.887 20 C -0.089 4.089 21 C -0.120 4.120 22 C -0.149 4.149 23 C -0.117 4.117 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.339 4.339 27 C 0.317 3.683 28 O -0.466 6.466 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.259 0.741 37 H 0.212 0.788 38 H 0.155 0.845 39 H 0.273 0.727 40 H 0.149 0.851 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 33.216 -18.017 -5.876 38.242 hybrid contribution -1.182 0.855 1.209 1.895 sum 32.035 -17.162 -4.667 36.640 Atomic orbital electron populations 1.70053 1.08145 1.28084 1.52667 1.25948 0.95554 1.03294 0.94282 0.85737 0.79395 0.78776 0.79233 1.19012 1.21118 1.17561 1.21469 0.91863 0.93312 1.50190 0.94151 1.19478 0.94140 0.94909 0.96664 1.21482 0.91759 0.98001 1.02532 1.21296 0.94537 0.82604 1.01215 1.45828 1.06618 1.09648 1.73726 1.21278 0.82746 0.92131 0.75778 1.90758 1.56468 1.47741 1.51439 1.22188 0.77528 0.94172 1.11372 1.46386 1.09786 1.57690 1.08345 1.25950 0.89009 0.82922 0.90564 1.68403 1.04557 1.24678 1.29222 1.20199 0.93959 0.86519 0.88012 1.18596 0.88763 1.06213 0.95303 1.21516 0.94922 0.97895 0.97651 1.21419 0.93720 1.00329 0.99464 1.21755 1.01673 0.96198 0.92081 1.21512 0.93234 1.00205 1.00137 1.21533 0.95379 0.95807 0.97061 1.23054 0.92607 1.17555 1.00660 1.17312 0.89500 0.78167 0.83332 1.90933 1.71267 1.54432 1.29974 0.92525 0.96648 0.96046 0.90800 0.91853 0.93494 0.91770 0.74089 0.78826 0.84484 0.72694 0.85105 0.83348 0.82999 0.83189 0.84298 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 2 C 0.01 0.36 5.47 84.66 0.46 0.82 16 3 Si 0.94 44.25 27.47 68.60 1.88 46.13 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.53 -29.64 9.66 25.60 0.25 -29.40 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.10 -3.39 5.27 30.59 0.16 -3.23 16 11 C 0.13 3.77 5.67 86.38 0.49 4.26 16 12 N -0.71 -15.09 5.56 -463.07 -2.57 -17.66 16 13 C 0.49 11.35 7.90 87.66 0.69 12.05 16 14 O -0.58 -19.73 16.43 -3.02 -0.05 -19.78 16 15 C 0.07 0.94 5.84 85.63 0.50 1.44 16 16 N -0.51 -9.40 2.06 -659.69 -1.36 -10.76 16 17 C 0.40 5.35 11.45 180.36 2.07 7.41 16 18 N -0.55 -9.84 9.53 -188.09 -1.79 -11.63 16 19 C 0.23 4.91 6.75 41.43 0.28 5.19 16 20 C -0.09 -1.61 5.88 -20.05 -0.12 -1.73 16 21 C -0.10 -1.59 9.43 22.51 0.21 -1.38 16 22 C -0.13 -1.51 10.03 22.24 0.22 -1.28 16 23 C -0.10 -0.95 10.04 22.32 0.22 -0.73 16 24 C -0.13 -1.46 10.03 22.24 0.22 -1.24 16 25 C -0.08 -1.21 9.59 22.51 0.22 -0.99 16 26 C -0.31 -7.64 9.47 22.91 0.22 -7.42 16 27 C 0.51 14.04 7.43 84.81 0.63 14.67 16 28 O -0.58 -20.35 16.76 -5.39 -0.09 -20.44 16 29 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 30 H 0.02 0.69 7.20 -2.38 -0.02 0.68 16 31 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.42 5.88 8.47 -92.71 -0.79 5.09 16 37 H 0.19 -0.07 8.00 -2.39 -0.02 -0.09 16 38 H 0.14 1.82 7.44 -2.39 -0.02 1.80 16 39 H 0.26 0.47 8.01 -2.91 -0.02 0.44 16 40 H 0.13 1.88 6.24 -2.91 -0.02 1.86 16 41 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.15 0.60 8.06 -2.91 -0.02 0.57 16 43 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.14 1.97 7.56 -2.91 -0.02 1.95 16 45 H 0.16 3.51 6.26 -2.91 -0.02 3.50 16 Total: -1.00 -88.69 386.25 3.35 -85.34 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.18 Total: 9.37 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.85 Total: -2.06 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -5.42 Total: -98.55 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.14 Total: -40.22 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -88.69 3.35 -85.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931969176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.760 kcal (2) G-P(sol) polarization free energy of solvation -88.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds