Wall clock time and date at job start Tue Mar 31 2020 23:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00009 * 2 1 4 4 H 1.48503 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47191 * 300.00506 * 3 2 1 6 6 H 1.48503 * 109.46950 * 60.00766 * 3 2 1 7 7 C 1.38814 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00107 * 196.57706 * 7 2 1 9 9 N 1.36933 * 119.99984 * 16.58021 * 7 2 1 10 10 C 1.46960 * 120.59823 * 208.84252 * 9 7 2 11 11 C 1.53369 * 108.64000 * 235.24919 * 10 9 7 12 12 N 1.46972 * 108.63235 * 310.57545 * 11 10 9 13 13 C 1.34774 * 120.58930 * 235.20020 * 12 11 10 14 14 O 1.21280 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99759 * 179.97438 * 13 12 11 16 16 H 1.09000 * 115.58035 * 58.81437 * 15 13 12 17 17 C 1.53136 * 117.51748 * 204.60172 * 15 13 12 18 18 C 1.52336 * 117.51654 * 273.03583 * 15 13 12 19 19 C 1.50772 * 121.76831 * 141.48188 * 18 15 13 20 20 O 1.21294 * 126.62310 * 36.14380 * 19 18 15 21 21 N 1.34606 * 106.76638 * 216.18582 * 19 18 15 22 22 C 1.39621 * 112.21575 * 0.02562 * 21 19 18 23 23 C 1.39322 * 130.81302 * 180.02562 * 22 21 19 24 24 C 1.37936 * 120.18547 * 179.70789 * 23 22 21 25 25 C 1.38310 * 120.34603 * 0.58439 * 24 23 22 26 26 C 1.38363 * 119.83145 * 359.42218 * 25 24 23 27 27 C 1.37684 * 119.98981 * 0.28226 * 26 25 24 28 28 C 1.46958 * 118.81357 * 55.47580 * 12 11 10 29 29 C 1.46972 * 120.59499 * 28.86332 * 9 7 2 30 30 H 0.97001 * 120.00272 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.61361 * 115.49815 * 10 9 7 32 32 H 1.09001 * 109.60700 * 354.99453 * 10 9 7 33 33 H 1.08998 * 109.61097 * 190.82805 * 11 10 9 34 34 H 1.08994 * 109.60950 * 70.31429 * 11 10 9 35 35 H 1.09001 * 117.51602 * 359.97438 * 17 15 13 36 36 H 1.08997 * 117.55183 * 214.86378 * 17 15 13 37 37 H 0.97000 * 123.89873 * 180.02562 * 21 19 18 38 38 H 1.07997 * 119.90750 * 0.02562 * 23 22 21 39 39 H 1.07999 * 119.82607 * 180.31352 * 24 23 22 40 40 H 1.08002 * 120.07837 * 179.70200 * 25 24 23 41 41 H 1.08004 * 120.00821 * 180.29992 * 26 25 24 42 42 H 1.09005 * 109.61150 * 64.26433 * 28 12 11 43 43 H 1.08995 * 109.61131 * 184.78128 * 28 12 11 44 44 H 1.08994 * 109.60984 * 244.49702 * 29 9 7 45 45 H 1.09006 * 109.60627 * 4.84134 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0566 -1.2217 0.2663 9 7 1.3683 -2.3632 -0.3395 10 6 1.8065 -3.6504 0.2181 11 6 2.1024 -4.6111 -0.9403 12 7 0.9631 -4.5923 -1.8686 13 6 0.3319 -5.7353 -2.2029 14 8 0.7026 -6.7916 -1.7363 15 6 -0.8353 -5.7005 -3.1555 16 1 -0.6259 -5.2854 -4.1414 17 6 -1.8526 -6.8419 -3.0699 18 6 -2.2177 -5.4513 -2.5661 19 6 -3.2387 -4.5948 -3.2712 20 8 -3.4193 -4.5220 -4.4684 21 7 -3.9105 -3.9256 -2.3158 22 6 -3.4538 -4.2361 -1.0334 23 6 -3.8656 -3.7769 0.2158 24 6 -3.2551 -4.2425 1.3617 25 6 -2.2222 -5.1588 1.2802 26 6 -1.8071 -5.6198 0.0434 27 6 -2.4181 -5.1619 -1.1023 28 6 0.5284 -3.3059 -2.4305 29 6 0.2290 -2.3446 -1.2677 30 1 -0.4850 0.8400 0.0004 31 1 1.0172 -4.0654 0.8449 32 1 2.7091 -3.5038 0.8114 33 1 2.2417 -5.6201 -0.5523 34 1 3.0040 -4.2891 -1.4613 35 1 -1.6773 -7.6180 -2.3249 36 1 -2.3129 -7.1778 -3.9991 37 1 -4.6291 -3.2998 -2.4972 38 1 -4.6686 -3.0583 0.2875 39 1 -3.5823 -3.8865 2.3274 40 1 -1.7440 -5.5168 2.1799 41 1 -1.0040 -6.3389 -0.0233 42 1 1.3206 -2.8931 -3.0552 43 1 -0.3720 -3.4527 -3.0268 44 1 -0.6726 -2.6665 -0.7467 45 1 0.0879 -1.3348 -1.6534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:20 Heat of formation + Delta-G solvation = 36.512510 kcal Electronic energy + Delta-G solvation = -31491.492199 eV Core-core repulsion = 27476.163156 eV Total energy + Delta-G solvation = -4015.329043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82016 -39.60915 -38.38146 -37.08494 -35.98462 -35.49158 -33.87097 -31.41026 -30.73021 -30.17629 -29.16171 -27.24512 -25.97997 -24.51469 -23.33197 -22.53465 -22.45860 -21.53349 -20.41327 -19.99947 -18.51937 -17.77445 -17.39618 -16.80588 -16.17246 -15.87079 -15.59696 -15.28692 -15.26854 -14.78729 -14.39456 -14.20150 -13.83969 -13.73768 -13.64384 -13.38017 -13.26966 -12.95654 -12.92269 -12.36983 -12.22514 -12.01116 -11.73054 -11.36599 -11.21240 -11.13921 -10.88797 -10.78437 -10.74754 -10.60283 -10.50963 -10.25418 -10.17638 -10.04646 -9.85708 -9.47354 -8.68111 -8.60809 -8.29049 -7.94370 -6.72317 -5.87701 -3.32611 1.13447 1.44259 2.25184 2.78032 3.00146 3.24362 3.30932 3.39766 3.41455 3.74386 3.99266 4.04634 4.26850 4.38024 4.42002 4.71541 4.88481 4.98997 5.16097 5.26185 5.32925 5.37119 5.41212 5.53177 5.60295 5.65381 5.76332 5.83815 5.85175 5.92492 6.04339 6.10372 6.15516 6.16801 6.32574 6.40316 6.46756 6.59915 6.66881 6.75124 6.76618 6.88763 7.09233 7.19770 7.45594 7.69896 7.83626 7.91911 8.33575 8.45281 9.09818 9.72431 10.29722 11.19380 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004843 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.131854 B = 5779.928417 C = 6345.789403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.134 3.866 11 C 0.095 3.905 12 N -0.583 5.583 13 C 0.543 3.457 14 O -0.553 6.553 15 C -0.130 4.130 16 H 0.138 0.862 17 C -0.093 4.093 18 C -0.127 4.127 19 C 0.565 3.435 20 O -0.503 6.503 21 N -0.653 5.653 22 C 0.145 3.855 23 C -0.132 4.132 24 C -0.078 4.078 25 C -0.130 4.130 26 C -0.057 4.057 27 C -0.102 4.102 28 C 0.081 3.919 29 C 0.164 3.836 30 H 0.253 0.747 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.415 0.585 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -10.382 -1.638 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.007 3.993 11 C -0.029 4.029 12 N -0.314 5.314 13 C 0.330 3.670 14 O -0.433 6.433 15 C -0.151 4.151 16 H 0.156 0.844 17 C -0.130 4.130 18 C -0.131 4.131 19 C 0.353 3.647 20 O -0.378 6.378 21 N -0.296 5.296 22 C 0.049 3.951 23 C -0.152 4.152 24 C -0.097 4.097 25 C -0.149 4.149 26 C -0.076 4.076 27 C -0.105 4.105 28 C -0.044 4.044 29 C 0.038 3.962 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.253 0.747 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.195 -10.764 -2.088 13.114 hybrid contribution -0.001 1.676 -0.124 1.680 sum -7.195 -9.088 -2.212 11.801 Atomic orbital electron populations 1.70019 1.05215 1.25421 1.53633 1.25066 0.95300 0.98435 1.00611 0.86243 0.79443 0.83899 0.77293 1.20214 1.21558 1.21692 1.19220 0.92466 0.84548 1.42130 0.91533 1.43945 1.36128 1.01750 1.49280 1.21276 0.98375 0.87076 0.92617 1.22267 0.87452 1.01152 0.92052 1.47956 1.32072 1.06747 1.44610 1.19295 0.82793 0.83765 0.81145 1.90641 1.67111 1.30013 1.55494 1.22179 0.87543 1.04587 1.00789 0.84449 1.22966 0.97589 0.88957 1.03507 1.20163 0.97390 1.02413 0.93106 1.19279 0.80997 0.79290 0.85142 1.90784 1.68687 1.65639 1.12660 1.43464 1.36960 1.43869 1.05274 1.18061 0.95343 0.96526 0.85203 1.20276 1.02977 1.02619 0.89370 1.20846 0.95328 0.95835 0.97651 1.21000 0.97879 0.98859 0.97169 1.20348 0.97987 0.98678 0.90549 1.18792 0.98973 1.00818 0.91942 1.22766 0.98818 0.84100 0.98678 1.21178 0.89285 0.97979 0.87798 0.93669 0.95761 0.91636 0.89917 0.91874 0.86171 0.86525 0.74657 0.85740 0.85318 0.85504 0.85416 0.91792 0.91606 0.95581 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 11.19 55.49 0.62 -24.06 16 2 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 3 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.60 9.57 -15.06 -0.14 -6.74 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -13.86 2.96 -171.76 -0.51 -14.37 16 10 C 0.13 2.68 6.67 -3.60 -0.02 2.66 16 11 C 0.09 1.67 6.59 -3.59 -0.02 1.65 16 12 N -0.58 -10.28 2.94 -172.22 -0.51 -10.78 16 13 C 0.54 9.09 5.58 -10.99 -0.06 9.03 16 14 O -0.55 -10.18 15.16 5.56 0.08 -10.10 16 15 C -0.13 -1.86 4.16 -92.04 -0.38 -2.25 16 16 H 0.14 1.84 7.96 -51.93 -0.41 1.43 16 17 C -0.09 -1.14 9.80 -27.00 -0.26 -1.41 16 18 C -0.13 -1.81 2.28 -157.52 -0.36 -2.17 16 19 C 0.57 8.38 8.47 -11.03 -0.09 8.28 16 20 O -0.50 -8.42 18.03 5.54 0.10 -8.32 16 21 N -0.65 -8.60 5.90 -9.79 -0.06 -8.66 16 22 C 0.15 2.05 7.12 -83.59 -0.59 1.46 16 23 C -0.13 -1.72 10.07 -39.29 -0.40 -2.11 16 24 C -0.08 -1.01 10.02 -39.67 -0.40 -1.40 16 25 C -0.13 -1.78 10.07 -39.51 -0.40 -2.17 16 26 C -0.06 -0.85 9.26 -39.74 -0.37 -1.22 16 27 C -0.10 -1.53 5.73 -104.58 -0.60 -2.13 16 28 C 0.08 1.49 6.54 -3.37 -0.02 1.46 16 29 C 0.16 3.68 5.53 -3.36 -0.02 3.66 16 30 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 33 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.12 1.46 7.89 -51.93 -0.41 1.05 16 36 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.42 4.43 8.96 -40.82 -0.37 4.06 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.13 2.00 6.61 -52.48 -0.35 1.65 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.13 6.08 -51.93 -0.32 0.81 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 2.43 6.00 -51.93 -0.31 2.12 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -30.87 368.95 -9.84 -40.71 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.87 Total: 7.54 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -4.23 Total: 6.64 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.45 Total: -57.88 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.87 -9.84 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.225 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds