Wall clock time and date at job start Tue Mar 31 2020 23:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00009 * 2 1 4 4 H 1.48503 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47191 * 300.00506 * 3 2 1 6 6 H 1.48503 * 109.46950 * 60.00766 * 3 2 1 7 7 C 1.38814 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00107 * 196.57706 * 7 2 1 9 9 N 1.36933 * 119.99984 * 16.58021 * 7 2 1 10 10 C 1.46960 * 120.59823 * 208.84252 * 9 7 2 11 11 C 1.53369 * 108.64000 * 235.24919 * 10 9 7 12 12 N 1.46972 * 108.63235 * 310.57545 * 11 10 9 13 13 C 1.34774 * 120.58930 * 235.20020 * 12 11 10 14 14 O 1.21280 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99759 * 179.97438 * 13 12 11 16 16 H 1.09000 * 115.58035 * 58.81437 * 15 13 12 17 17 C 1.53136 * 117.51748 * 204.60172 * 15 13 12 18 18 C 1.52336 * 117.51654 * 273.03583 * 15 13 12 19 19 C 1.50772 * 121.76831 * 141.48188 * 18 15 13 20 20 O 1.21294 * 126.62310 * 36.14380 * 19 18 15 21 21 N 1.34606 * 106.76638 * 216.18582 * 19 18 15 22 22 C 1.39621 * 112.21575 * 0.02562 * 21 19 18 23 23 C 1.39322 * 130.81302 * 180.02562 * 22 21 19 24 24 C 1.37936 * 120.18547 * 179.70789 * 23 22 21 25 25 C 1.38310 * 120.34603 * 0.58439 * 24 23 22 26 26 C 1.38363 * 119.83145 * 359.42218 * 25 24 23 27 27 C 1.37684 * 119.98981 * 0.28226 * 26 25 24 28 28 C 1.46958 * 118.81357 * 55.47580 * 12 11 10 29 29 C 1.46972 * 120.59499 * 28.86332 * 9 7 2 30 30 H 0.97001 * 120.00272 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.61361 * 115.49815 * 10 9 7 32 32 H 1.09001 * 109.60700 * 354.99453 * 10 9 7 33 33 H 1.08998 * 109.61097 * 190.82805 * 11 10 9 34 34 H 1.08994 * 109.60950 * 70.31429 * 11 10 9 35 35 H 1.09001 * 117.51602 * 359.97438 * 17 15 13 36 36 H 1.08997 * 117.55183 * 214.86378 * 17 15 13 37 37 H 0.97000 * 123.89873 * 180.02562 * 21 19 18 38 38 H 1.07997 * 119.90750 * 0.02562 * 23 22 21 39 39 H 1.07999 * 119.82607 * 180.31352 * 24 23 22 40 40 H 1.08002 * 120.07837 * 179.70200 * 25 24 23 41 41 H 1.08004 * 120.00821 * 180.29992 * 26 25 24 42 42 H 1.09005 * 109.61150 * 64.26433 * 28 12 11 43 43 H 1.08995 * 109.61131 * 184.78128 * 28 12 11 44 44 H 1.08994 * 109.60984 * 244.49702 * 29 9 7 45 45 H 1.09006 * 109.60627 * 4.84134 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0566 -1.2217 0.2663 9 7 1.3683 -2.3632 -0.3395 10 6 1.8065 -3.6504 0.2181 11 6 2.1024 -4.6111 -0.9403 12 7 0.9631 -4.5923 -1.8686 13 6 0.3319 -5.7353 -2.2029 14 8 0.7026 -6.7916 -1.7363 15 6 -0.8353 -5.7005 -3.1555 16 1 -0.6259 -5.2854 -4.1414 17 6 -1.8526 -6.8419 -3.0699 18 6 -2.2177 -5.4513 -2.5661 19 6 -3.2387 -4.5948 -3.2712 20 8 -3.4193 -4.5220 -4.4684 21 7 -3.9105 -3.9256 -2.3158 22 6 -3.4538 -4.2361 -1.0334 23 6 -3.8656 -3.7769 0.2158 24 6 -3.2551 -4.2425 1.3617 25 6 -2.2222 -5.1588 1.2802 26 6 -1.8071 -5.6198 0.0434 27 6 -2.4181 -5.1619 -1.1023 28 6 0.5284 -3.3059 -2.4305 29 6 0.2290 -2.3446 -1.2677 30 1 -0.4850 0.8400 0.0004 31 1 1.0172 -4.0654 0.8449 32 1 2.7091 -3.5038 0.8114 33 1 2.2417 -5.6201 -0.5523 34 1 3.0040 -4.2891 -1.4613 35 1 -1.6773 -7.6180 -2.3249 36 1 -2.3129 -7.1778 -3.9991 37 1 -4.6291 -3.2998 -2.4972 38 1 -4.6686 -3.0583 0.2875 39 1 -3.5823 -3.8865 2.3274 40 1 -1.7440 -5.5168 2.1799 41 1 -1.0040 -6.3389 -0.0233 42 1 1.3206 -2.8931 -3.0552 43 1 -0.3720 -3.4527 -3.0268 44 1 -0.6726 -2.6665 -0.7467 45 1 0.0879 -1.3348 -1.6534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:19 Heat of formation + Delta-G solvation = 18.593666 kcal Electronic energy + Delta-G solvation = -31492.269218 eV Core-core repulsion = 27476.163156 eV Total energy + Delta-G solvation = -4016.106063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.94002 -40.97377 -39.50018 -38.62357 -37.20772 -36.60077 -35.58456 -33.19265 -31.92381 -31.73725 -30.23416 -28.90868 -27.18782 -25.97762 -24.96223 -23.99129 -23.61636 -22.62234 -21.89962 -21.18840 -19.99392 -19.06174 -18.59373 -18.16973 -17.67347 -17.23035 -16.83073 -16.64138 -16.47572 -16.41610 -15.77180 -15.45006 -15.30288 -15.17961 -15.10504 -14.89284 -14.81797 -14.15819 -14.05231 -13.81601 -13.42542 -13.25833 -13.22493 -13.01999 -12.71765 -12.48636 -12.33142 -12.23758 -12.17971 -12.00960 -11.92055 -11.87691 -11.65520 -11.62530 -11.32721 -10.86587 -10.57568 -9.83797 -9.74031 -9.02838 -8.61760 -7.85896 -5.33701 0.03691 0.36267 1.10995 1.46610 1.50716 1.54858 1.59325 1.85440 1.94957 2.51538 2.63215 2.89827 2.91109 3.16726 3.27806 3.28937 3.54384 3.62413 3.70442 3.93177 4.15060 4.22159 4.24228 4.31070 4.39568 4.40520 4.51991 4.54198 4.58999 4.63147 4.67650 4.74511 4.82481 4.87308 4.99153 5.10046 5.12048 5.24545 5.40627 5.52435 5.52866 5.59484 5.62087 5.66830 5.71191 6.03413 6.37607 6.41473 6.84398 7.07950 7.13558 7.81501 8.35343 9.18451 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004843 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.131854 B = 5779.928417 C = 6345.789403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.042 4.042 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.603 5.603 10 C 0.136 3.864 11 C 0.104 3.896 12 N -0.588 5.588 13 C 0.548 3.452 14 O -0.567 6.567 15 C -0.140 4.140 16 H 0.150 0.850 17 C -0.071 4.071 18 C -0.134 4.134 19 C 0.565 3.435 20 O -0.525 6.525 21 N -0.644 5.644 22 C 0.131 3.869 23 C -0.134 4.134 24 C -0.084 4.084 25 C -0.138 4.138 26 C -0.071 4.071 27 C -0.115 4.115 28 C 0.098 3.902 29 C 0.179 3.821 30 H 0.249 0.751 31 H 0.015 0.985 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.426 0.574 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.003 0.997 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 -10.857 -1.905 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.238 4.238 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.010 3.990 11 C -0.020 4.020 12 N -0.318 5.318 13 C 0.337 3.663 14 O -0.448 6.448 15 C -0.161 4.161 16 H 0.168 0.832 17 C -0.109 4.109 18 C -0.138 4.138 19 C 0.353 3.647 20 O -0.402 6.402 21 N -0.287 5.287 22 C 0.035 3.965 23 C -0.155 4.155 24 C -0.102 4.102 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.118 4.118 28 C -0.026 4.026 29 C 0.052 3.948 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.266 0.734 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.021 0.979 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.155 -11.262 -2.344 13.547 hybrid contribution -0.025 1.776 0.061 1.777 sum -7.180 -9.487 -2.283 12.115 Atomic orbital electron populations 1.70153 1.06369 1.25641 1.54929 1.25712 0.95983 1.01088 1.01023 0.85307 0.78736 0.80333 0.76624 1.19286 1.21867 1.22143 1.19488 0.92692 0.85583 1.41384 0.91467 1.44153 1.36158 1.02341 1.49971 1.21330 0.98133 0.86068 0.93517 1.22111 0.87759 1.00825 0.91256 1.47945 1.32303 1.06728 1.44872 1.19592 0.82832 0.83038 0.80880 1.90632 1.67608 1.30436 1.56119 1.22193 0.86740 1.06600 1.00573 0.83235 1.23115 0.95465 0.87973 1.04297 1.20199 0.97035 1.03781 0.92758 1.19328 0.81132 0.79321 0.84939 1.90771 1.69505 1.66520 1.13424 1.43380 1.36934 1.43646 1.04774 1.18237 0.95652 0.96837 0.85773 1.20635 1.03286 1.02560 0.89000 1.21197 0.94887 0.95360 0.98792 1.21277 0.98156 0.98929 0.97357 1.20331 0.98210 0.99152 0.91232 1.18929 0.99403 1.01245 0.92243 1.22449 0.99602 0.83605 0.96982 1.20866 0.88243 0.97148 0.88519 0.94153 0.96704 0.91025 0.88938 0.91200 0.85958 0.84204 0.73401 0.83502 0.82920 0.84120 0.86559 0.91395 0.90186 0.97935 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.46 11.19 21.65 0.24 -51.21 16 2 C -0.04 -2.21 4.92 84.86 0.42 -1.79 16 3 Si 0.96 42.93 29.59 68.60 2.03 44.96 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.26 -13.53 9.57 84.03 0.80 -12.73 16 8 H 0.07 3.41 7.88 -2.91 -0.02 3.39 16 9 N -0.60 -28.41 2.96 -697.33 -2.07 -30.48 16 10 C 0.14 5.38 6.67 86.42 0.58 5.96 16 11 C 0.10 3.57 6.59 86.41 0.57 4.14 16 12 N -0.59 -20.09 2.94 -817.16 -2.40 -22.49 16 13 C 0.55 17.65 5.58 87.66 0.49 18.14 16 14 O -0.57 -20.15 15.16 -3.03 -0.05 -20.20 16 15 C -0.14 -3.80 4.16 -11.71 -0.05 -3.85 16 16 H 0.15 3.71 7.96 -2.39 -0.02 3.69 16 17 C -0.07 -1.62 9.80 30.42 0.30 -1.32 16 18 C -0.13 -3.66 2.28 -54.13 -0.12 -3.78 16 19 C 0.56 16.13 8.47 87.71 0.74 16.87 16 20 O -0.53 -17.00 18.03 -3.07 -0.06 -17.05 16 21 N -0.64 -16.40 5.90 -303.37 -1.79 -18.19 16 22 C 0.13 3.61 7.12 38.37 0.27 3.89 16 23 C -0.13 -3.35 10.07 22.46 0.23 -3.12 16 24 C -0.08 -2.07 10.02 22.22 0.22 -1.84 16 25 C -0.14 -3.70 10.07 22.32 0.22 -3.48 16 26 C -0.07 -2.09 9.26 22.17 0.21 -1.88 16 27 C -0.12 -3.37 5.73 -19.84 -0.11 -3.48 16 28 C 0.10 3.54 6.54 86.57 0.57 4.11 16 29 C 0.18 8.09 5.53 86.56 0.48 8.56 16 30 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 31 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 33 H 0.09 3.01 6.99 -2.39 -0.02 2.99 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.12 2.76 7.89 -2.39 -0.02 2.74 16 36 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.43 8.69 8.96 -92.71 -0.83 7.86 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.12 3.64 6.61 -2.91 -0.02 3.62 16 42 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.08 2.67 6.08 -2.39 -0.01 2.65 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.07 3.38 6.00 -2.38 -0.01 3.36 16 Total: -1.00 -65.27 368.95 1.93 -63.35 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.21 Total: 26.94 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 5.81 Total: 24.38 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -6.02 Total: -122.38 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.10 Total: -37.25 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.27 1.93 -63.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.939 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds