Wall clock time and date at job start Tue Mar 31 2020 23:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46899 * 270.00249 * 3 2 1 5 5 H 1.48501 * 109.47072 * 30.00226 * 3 2 1 6 6 H 1.48500 * 109.47109 * 150.00095 * 3 2 1 7 7 C 1.38810 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64879 * 0.04347 * 9 7 2 11 11 C 1.54314 * 107.27401 * 181.02148 * 10 9 7 12 12 H 1.08996 * 110.87575 * 263.76054 * 11 10 9 13 13 O 1.42896 * 110.72237 * 140.55183 * 11 10 9 14 14 C 1.55167 * 102.94107 * 22.19330 * 11 10 9 15 15 H 1.08993 * 111.00362 * 82.56990 * 14 11 10 16 16 C 1.52999 * 111.00303 * 206.42368 * 14 11 10 17 17 N 1.46502 * 109.47306 * 184.99866 * 16 14 11 18 18 C 1.34773 * 120.00051 * 180.02562 * 17 16 14 19 19 O 1.21537 * 119.99986 * 359.97438 * 18 17 16 20 20 C 1.47908 * 119.99672 * 179.97438 * 18 17 16 21 21 C 1.38892 * 121.11107 * 354.17011 * 20 18 17 22 22 C 1.39273 * 119.57699 * 179.81372 * 21 20 18 23 23 N 1.31002 * 121.88154 * 0.45460 * 22 21 20 24 24 C 1.33532 * 121.83069 * 359.77662 * 23 22 21 25 25 C 1.40712 * 120.97464 * 179.97438 * 24 23 22 26 26 C 1.36055 * 119.74279 * 180.02562 * 25 24 23 27 27 C 1.39353 * 121.05699 * 0.02562 * 26 25 24 28 28 C 1.36250 * 120.84015 * 0.02562 * 27 26 25 29 29 C 1.40108 * 119.63766 * 359.95959 * 28 27 26 30 30 C 1.47421 * 125.64793 * 179.97438 * 9 7 2 31 31 H 0.97004 * 119.99661 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.88051 * 61.60434 * 10 9 7 33 33 H 1.09001 * 109.87813 * 300.44359 * 10 9 7 34 34 H 0.96699 * 113.99974 * 66.47751 * 13 11 10 35 35 H 1.09004 * 109.47318 * 305.00354 * 16 14 11 36 36 H 1.08998 * 109.47290 * 64.99792 * 16 14 11 37 37 H 0.96997 * 119.99235 * 0.02562 * 17 16 14 38 38 H 1.07994 * 120.21250 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.05923 * 180.22944 * 22 21 20 40 40 H 1.07995 * 120.12489 * 0.04699 * 25 24 23 41 41 H 1.07995 * 119.47461 * 179.97438 * 26 25 24 42 42 H 1.07998 * 119.58197 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.18463 * 180.02562 * 28 27 26 44 44 H 1.08994 * 110.36768 * 37.07203 * 30 9 7 45 45 H 1.09004 * 110.36736 * 274.74248 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5328 -0.0009 11 6 -0.4486 -4.0440 0.0255 12 1 -0.6332 -4.4202 -0.9807 13 8 -1.5631 -4.3161 0.8775 14 6 0.8517 -4.6562 0.6104 15 1 0.8564 -4.5966 1.6987 16 6 1.0368 -6.1008 0.1417 17 7 2.2056 -6.6837 0.8054 18 6 2.5641 -7.9563 0.5441 19 8 1.9174 -8.6206 -0.2418 20 6 3.7445 -8.5445 1.2137 21 6 4.5693 -7.7731 2.0223 22 6 5.6702 -8.3608 2.6406 23 7 5.9617 -9.6274 2.4764 24 6 5.2167 -10.4279 1.7101 25 6 5.5467 -11.7858 1.5459 26 6 4.7703 -12.5787 0.7587 27 6 3.6487 -12.0682 0.1082 28 6 3.2990 -10.7582 0.2429 29 6 4.0757 -9.9129 1.0461 30 6 1.9334 -3.7311 -0.0016 31 1 -0.4850 0.8401 0.0004 32 1 -0.5542 -2.0843 -0.9028 33 1 -0.5578 -2.0523 0.8826 34 1 -2.4007 -3.9547 0.5568 35 1 0.1490 -6.6811 0.3935 36 1 1.1867 -6.1162 -0.9378 37 1 2.7214 -6.1535 1.4328 38 1 4.3568 -6.7251 2.1727 39 1 6.3039 -7.7541 3.2705 40 1 6.4127 -12.1971 2.0430 41 1 5.0278 -13.6203 0.6354 42 1 3.0489 -12.7191 -0.5107 43 1 2.4273 -10.3738 -0.2658 44 1 2.8330 -3.7409 0.6136 45 1 2.1660 -4.0415 -1.0203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958232385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:39 Heat of formation + Delta-G solvation = 6.330638 kcal Electronic energy + Delta-G solvation = -28608.241709 eV Core-core repulsion = 24591.603881 eV Total energy + Delta-G solvation = -4016.637827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35181 -39.58250 -38.27570 -37.36554 -35.30493 -34.81528 -33.73402 -32.32398 -30.83896 -30.51290 -29.55475 -27.67992 -26.01280 -25.00577 -23.87264 -23.62464 -22.56413 -21.08161 -20.37657 -19.95063 -18.42565 -17.87642 -17.63124 -17.00568 -16.71898 -15.96593 -15.73478 -15.58451 -15.11780 -14.98009 -14.62730 -14.54303 -14.19315 -14.11673 -13.89568 -13.40992 -13.32159 -13.25107 -12.72547 -12.51458 -12.12953 -12.06317 -11.91024 -11.65773 -11.54382 -11.29453 -11.04837 -10.86824 -10.75588 -10.66579 -10.53907 -10.11588 -9.95066 -9.88565 -9.50742 -9.27781 -9.19321 -9.09137 -8.71925 -8.51902 -6.97059 -5.81769 -3.16643 -0.18112 0.50404 1.46497 2.52705 2.87165 2.92217 3.34020 3.39025 3.41058 3.86469 3.95342 4.24562 4.33774 4.39145 4.44084 4.56351 4.65355 4.81592 4.88842 4.96518 5.04898 5.09053 5.24559 5.32051 5.36148 5.43392 5.48416 5.59130 5.74372 5.76640 5.80322 5.91801 5.95223 6.04158 6.11348 6.17264 6.24024 6.27379 6.36190 6.44928 6.60482 6.72607 7.28757 7.32527 7.42792 7.55236 7.68428 7.97169 8.12027 8.13311 9.09519 9.70101 10.33768 11.29791 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002321 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.383500 B =12060.430969 C =13211.537779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.567 6.567 14 C -0.109 4.109 15 H 0.091 0.909 16 C 0.132 3.868 17 N -0.711 5.711 18 C 0.559 3.441 19 O -0.529 6.529 20 C -0.068 4.068 21 C -0.138 4.138 22 C 0.127 3.873 23 N -0.460 5.460 24 C 0.123 3.877 25 C -0.100 4.100 26 C -0.098 4.098 27 C -0.120 4.120 28 C -0.100 4.100 29 C -0.066 4.066 30 C 0.141 3.859 31 H 0.253 0.747 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.377 0.623 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.403 0.597 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.170 0.830 44 H 0.042 0.958 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -20.952 3.061 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.372 6.372 14 C -0.129 4.129 15 H 0.109 0.891 16 C 0.009 3.991 17 N -0.361 5.361 18 C 0.345 3.655 19 O -0.407 6.407 20 C -0.080 4.080 21 C -0.158 4.158 22 C -0.045 4.045 23 N -0.168 5.168 24 C 0.001 3.999 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.138 4.138 28 C -0.118 4.118 29 C -0.069 4.069 30 C 0.015 3.985 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.239 0.761 38 H 0.163 0.837 39 H 0.185 0.815 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.187 0.813 44 H 0.061 0.939 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.238 -21.912 3.220 23.300 hybrid contribution -0.391 1.981 -0.413 2.061 sum 6.847 -19.931 2.807 21.261 Atomic orbital electron populations 1.69942 1.04948 1.25233 1.56803 1.24828 0.95769 0.97829 1.01944 0.86086 0.78578 0.83260 0.77622 1.21523 1.21607 1.20618 1.19056 0.90456 0.82202 1.44260 0.90236 1.44305 1.01318 0.99924 1.87390 1.21830 0.85194 0.88457 1.01871 1.23116 0.85047 0.97925 0.91607 0.92485 1.86416 1.18893 1.80093 1.51770 1.22632 0.96368 0.92126 1.01737 0.89120 1.21482 0.87129 0.93222 0.97284 1.45969 1.31301 1.12711 1.46144 1.18021 0.83743 0.81903 0.81807 1.90588 1.54402 1.59950 1.35789 1.20390 0.95905 0.93820 0.97838 1.22507 0.95600 1.01327 0.96411 1.22940 0.94409 0.90959 0.96188 1.67810 1.29006 1.05335 1.14666 1.18899 0.91611 0.94556 0.94805 1.20776 1.00539 0.91007 0.99501 1.20998 0.94679 1.00140 0.95973 1.21117 0.97121 0.95860 0.99683 1.22092 1.00402 0.93088 0.96186 1.18683 0.96441 0.92912 0.98828 1.21634 0.94007 0.85844 0.97056 0.93627 0.93598 0.92348 0.77629 0.90739 0.90888 0.76140 0.83701 0.81537 0.84625 0.85261 0.85344 0.81344 0.93933 0.95867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.31 55.49 0.57 -25.66 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.20 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.58 3.39 -170.06 -0.58 -15.15 16 10 C 0.15 3.49 5.15 -3.07 -0.02 3.47 16 11 C 0.08 1.47 3.80 -24.90 -0.09 1.38 16 12 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 13 O -0.57 -9.39 13.39 -35.23 -0.47 -9.86 16 14 C -0.11 -1.76 2.77 -88.45 -0.25 -2.00 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 16 C 0.13 1.82 5.13 -4.04 -0.02 1.80 16 17 N -0.71 -8.57 5.46 -61.23 -0.33 -8.91 16 18 C 0.56 7.37 7.75 -12.30 -0.10 7.28 16 19 O -0.53 -8.24 13.52 5.33 0.07 -8.17 16 20 C -0.07 -0.81 5.94 -104.34 -0.62 -1.43 16 21 C -0.14 -1.28 9.60 -38.95 -0.37 -1.65 16 22 C 0.13 1.17 11.14 -17.52 -0.20 0.97 16 23 N -0.46 -5.27 10.30 -11.00 -0.11 -5.38 16 24 C 0.12 1.46 6.61 -84.87 -0.56 0.90 16 25 C -0.10 -0.97 9.98 -39.43 -0.39 -1.36 16 26 C -0.10 -0.82 9.94 -39.95 -0.40 -1.21 16 27 C -0.12 -1.12 9.96 -39.88 -0.40 -1.52 16 28 C -0.10 -1.18 9.25 -39.60 -0.37 -1.55 16 29 C -0.07 -0.82 5.76 -106.52 -0.61 -1.44 16 30 C 0.14 2.64 6.65 -2.52 -0.02 2.63 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 33 H 0.06 1.52 7.30 -51.93 -0.38 1.14 16 34 H 0.38 4.82 9.12 45.56 0.42 5.23 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 37 H 0.40 4.03 6.65 -40.82 -0.27 3.76 16 38 H 0.15 0.96 6.55 -52.49 -0.34 0.61 16 39 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.17 2.20 4.98 -52.49 -0.26 1.94 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.02 0.44 7.91 -51.93 -0.41 0.03 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -33.46 371.24 -9.91 -43.38 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.98 Total: 8.09 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -4.66 Total: -0.38 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.45 Total: -55.10 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.40 Total: -18.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.46 -9.91 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958232385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.707 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds