Wall clock time and date at job start Tue Mar 31 2020 23:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46899 * 270.00249 * 3 2 1 5 5 H 1.48501 * 109.47072 * 30.00226 * 3 2 1 6 6 H 1.48500 * 109.47109 * 150.00095 * 3 2 1 7 7 C 1.38810 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64879 * 0.04347 * 9 7 2 11 11 C 1.54314 * 107.27401 * 181.02148 * 10 9 7 12 12 H 1.08996 * 110.87575 * 263.76054 * 11 10 9 13 13 O 1.42896 * 110.72237 * 140.55183 * 11 10 9 14 14 C 1.55167 * 102.94107 * 22.19330 * 11 10 9 15 15 H 1.08993 * 111.00362 * 82.56990 * 14 11 10 16 16 C 1.52999 * 111.00303 * 206.42368 * 14 11 10 17 17 N 1.46502 * 109.47306 * 184.99866 * 16 14 11 18 18 C 1.34773 * 120.00051 * 180.02562 * 17 16 14 19 19 O 1.21537 * 119.99986 * 359.97438 * 18 17 16 20 20 C 1.47908 * 119.99672 * 179.97438 * 18 17 16 21 21 C 1.38892 * 121.11107 * 354.17011 * 20 18 17 22 22 C 1.39273 * 119.57699 * 179.81372 * 21 20 18 23 23 N 1.31002 * 121.88154 * 0.45460 * 22 21 20 24 24 C 1.33532 * 121.83069 * 359.77662 * 23 22 21 25 25 C 1.40712 * 120.97464 * 179.97438 * 24 23 22 26 26 C 1.36055 * 119.74279 * 180.02562 * 25 24 23 27 27 C 1.39353 * 121.05699 * 0.02562 * 26 25 24 28 28 C 1.36250 * 120.84015 * 0.02562 * 27 26 25 29 29 C 1.40108 * 119.63766 * 359.95959 * 28 27 26 30 30 C 1.47421 * 125.64793 * 179.97438 * 9 7 2 31 31 H 0.97004 * 119.99661 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.88051 * 61.60434 * 10 9 7 33 33 H 1.09001 * 109.87813 * 300.44359 * 10 9 7 34 34 H 0.96699 * 113.99974 * 66.47751 * 13 11 10 35 35 H 1.09004 * 109.47318 * 305.00354 * 16 14 11 36 36 H 1.08998 * 109.47290 * 64.99792 * 16 14 11 37 37 H 0.96997 * 119.99235 * 0.02562 * 17 16 14 38 38 H 1.07994 * 120.21250 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.05923 * 180.22944 * 22 21 20 40 40 H 1.07995 * 120.12489 * 0.04699 * 25 24 23 41 41 H 1.07995 * 119.47461 * 179.97438 * 26 25 24 42 42 H 1.07998 * 119.58197 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.18463 * 180.02562 * 28 27 26 44 44 H 1.08994 * 110.36768 * 37.07203 * 30 9 7 45 45 H 1.09004 * 110.36736 * 274.74248 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5328 -0.0009 11 6 -0.4486 -4.0440 0.0255 12 1 -0.6332 -4.4202 -0.9807 13 8 -1.5631 -4.3161 0.8775 14 6 0.8517 -4.6562 0.6104 15 1 0.8564 -4.5966 1.6987 16 6 1.0368 -6.1008 0.1417 17 7 2.2056 -6.6837 0.8054 18 6 2.5641 -7.9563 0.5441 19 8 1.9174 -8.6206 -0.2418 20 6 3.7445 -8.5445 1.2137 21 6 4.5693 -7.7731 2.0223 22 6 5.6702 -8.3608 2.6406 23 7 5.9617 -9.6274 2.4764 24 6 5.2167 -10.4279 1.7101 25 6 5.5467 -11.7858 1.5459 26 6 4.7703 -12.5787 0.7587 27 6 3.6487 -12.0682 0.1082 28 6 3.2990 -10.7582 0.2429 29 6 4.0757 -9.9129 1.0461 30 6 1.9334 -3.7311 -0.0016 31 1 -0.4850 0.8401 0.0004 32 1 -0.5542 -2.0843 -0.9028 33 1 -0.5578 -2.0523 0.8826 34 1 -2.4007 -3.9547 0.5568 35 1 0.1490 -6.6811 0.3935 36 1 1.1867 -6.1162 -0.9378 37 1 2.7214 -6.1535 1.4328 38 1 4.3568 -6.7251 2.1727 39 1 6.3039 -7.7541 3.2705 40 1 6.4127 -12.1971 2.0430 41 1 5.0278 -13.6203 0.6354 42 1 3.0489 -12.7191 -0.5107 43 1 2.4273 -10.3738 -0.2658 44 1 2.8330 -3.7409 0.6136 45 1 2.1660 -4.0415 -1.0203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958232385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:38 Heat of formation + Delta-G solvation = -18.047686 kcal Electronic energy + Delta-G solvation = -28609.298832 eV Core-core repulsion = 24591.603881 eV Total energy + Delta-G solvation = -4017.694951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16320 -40.63351 -39.70553 -38.09229 -36.65603 -36.21892 -34.60827 -33.98250 -31.77350 -31.50497 -30.76396 -29.31161 -27.42521 -26.23067 -24.97102 -24.54818 -23.51670 -22.33686 -21.87326 -21.26043 -19.30429 -18.88485 -18.65272 -18.47061 -18.05329 -17.12477 -16.91792 -16.57406 -16.46003 -15.93100 -15.79787 -15.63136 -15.38189 -15.27342 -14.83744 -14.66947 -14.42257 -14.23813 -14.11936 -13.96261 -13.70696 -13.21492 -13.10365 -12.79095 -12.72406 -12.64421 -12.43199 -12.33023 -12.29756 -11.92185 -11.79673 -11.57420 -11.55689 -11.33992 -10.84319 -10.73355 -10.36064 -10.25251 -9.81388 -9.29438 -8.93587 -7.86520 -5.22824 -0.96757 -0.22923 0.66076 1.47190 1.48361 1.56923 1.71201 1.87602 2.07852 2.48067 3.08680 3.21512 3.28030 3.33445 3.41563 3.54934 3.61814 3.69313 3.72073 3.85784 3.88832 4.14877 4.17626 4.22278 4.39407 4.41635 4.44114 4.54500 4.55388 4.62949 4.74103 4.77439 4.87004 4.93346 5.04627 5.07210 5.25176 5.34415 5.34857 5.42430 5.48676 5.49199 5.56317 5.71465 5.88472 6.16483 6.33806 6.79821 6.88121 7.00415 7.07121 7.74189 8.37125 9.23590 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002321 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.383500 B =12060.430969 C =13211.537779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.161 3.839 11 C 0.096 3.904 12 H 0.076 0.924 13 O -0.570 6.570 14 C -0.090 4.090 15 H 0.090 0.910 16 C 0.146 3.854 17 N -0.702 5.702 18 C 0.560 3.440 19 O -0.558 6.558 20 C -0.092 4.092 21 C -0.123 4.123 22 C 0.125 3.875 23 N -0.475 5.475 24 C 0.100 3.900 25 C -0.107 4.107 26 C -0.093 4.093 27 C -0.113 4.113 28 C -0.129 4.129 29 C -0.086 4.086 30 C 0.138 3.862 31 H 0.246 0.754 32 H 0.012 0.988 33 H 0.020 0.980 34 H 0.393 0.607 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.414 0.586 38 H 0.173 0.827 39 H 0.203 0.797 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.060 0.940 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -22.446 3.756 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.035 3.965 11 C 0.036 3.964 12 H 0.093 0.907 13 O -0.377 6.377 14 C -0.109 4.109 15 H 0.108 0.892 16 C 0.023 3.977 17 N -0.354 5.354 18 C 0.348 3.652 19 O -0.438 6.438 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.047 4.047 23 N -0.184 5.184 24 C -0.021 4.021 25 C -0.125 4.125 26 C -0.113 4.113 27 C -0.131 4.131 28 C -0.147 4.147 29 C -0.088 4.088 30 C 0.013 3.987 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.191 0.809 39 H 0.219 0.781 40 H 0.169 0.831 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.078 0.922 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.140 -23.434 3.926 25.458 hybrid contribution -0.951 2.391 -0.619 2.647 sum 8.189 -21.043 3.307 22.821 Atomic orbital electron populations 1.70164 1.06326 1.25282 1.58344 1.25667 0.96628 1.01129 1.02654 0.85081 0.77772 0.79112 0.77387 1.21471 1.22369 1.19034 1.19487 0.91167 0.83422 1.42821 0.89377 1.44611 1.02064 1.01337 1.87200 1.21590 0.84745 0.91791 0.98396 1.22888 0.86266 0.94204 0.93046 0.90661 1.86386 1.19513 1.79883 1.51898 1.22424 0.94328 0.92821 1.01357 0.89205 1.21200 0.87874 0.91468 0.97203 1.45805 1.30859 1.12572 1.46153 1.18239 0.83866 0.81759 0.81359 1.90584 1.55458 1.60671 1.37113 1.20350 0.96309 0.94201 0.99477 1.22842 0.94576 1.02336 0.94568 1.23565 0.94562 0.90636 0.95981 1.67861 1.29295 1.06335 1.14922 1.19214 0.91812 0.95660 0.95412 1.21096 1.01246 0.90470 0.99738 1.21358 0.93608 1.01615 0.94675 1.21444 0.97358 0.95166 0.99087 1.22036 1.00658 0.94446 0.97570 1.18882 0.97043 0.93464 0.99434 1.21826 0.95213 0.83760 0.97889 0.94442 0.97014 0.96216 0.75739 0.90811 0.91035 0.74807 0.80928 0.78057 0.83064 0.81786 0.83122 0.83116 0.92155 0.95220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.92 10.31 21.65 0.22 -55.69 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 3 Si 0.98 44.47 29.55 68.60 2.03 46.49 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.24 -12.84 10.28 84.03 0.86 -11.98 16 8 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -30.28 3.39 -691.96 -2.35 -32.63 16 10 C 0.16 7.55 5.15 86.72 0.45 8.00 16 11 C 0.10 3.34 3.80 31.78 0.12 3.46 16 12 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 13 O -0.57 -18.30 13.39 -148.98 -1.99 -20.29 16 14 C -0.09 -2.75 2.77 -9.39 -0.03 -2.77 16 15 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 16 C 0.15 3.79 5.13 86.38 0.44 4.24 16 17 N -0.70 -15.73 5.46 -465.92 -2.54 -18.27 16 18 C 0.56 14.41 7.75 86.81 0.67 15.08 16 19 O -0.56 -17.52 13.52 -3.83 -0.05 -17.57 16 20 C -0.09 -2.11 5.94 -19.68 -0.12 -2.23 16 21 C -0.12 -2.01 9.60 22.68 0.22 -1.80 16 22 C 0.12 1.99 11.14 85.07 0.95 2.94 16 23 N -0.48 -10.16 10.30 -188.73 -1.94 -12.11 16 24 C 0.10 2.29 6.61 40.35 0.27 2.56 16 25 C -0.11 -1.92 9.98 22.37 0.22 -1.69 16 26 C -0.09 -1.35 9.94 22.03 0.22 -1.13 16 27 C -0.11 -1.98 9.96 22.07 0.22 -1.76 16 28 C -0.13 -3.09 9.25 22.26 0.21 -2.88 16 29 C -0.09 -2.12 5.76 -21.09 -0.12 -2.24 16 30 C 0.14 4.97 6.65 86.86 0.58 5.54 16 31 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 32 H 0.01 0.62 7.51 -2.39 -0.02 0.60 16 33 H 0.02 1.07 7.30 -2.39 -0.02 1.05 16 34 H 0.39 9.75 9.12 -74.06 -0.68 9.07 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 37 H 0.41 7.24 6.65 -92.71 -0.62 6.62 16 38 H 0.17 1.71 6.55 -2.91 -0.02 1.69 16 39 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.15 4.12 4.98 -2.91 -0.01 4.11 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.03 1.06 7.91 -2.38 -0.02 1.04 16 Total: -1.00 -75.04 371.24 -1.25 -76.28 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.24 Total: 23.74 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.63 Total: 10.05 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -6.61 Total: -118.71 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -2.05 Total: -37.86 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.04 -1.25 -76.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958232385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.236 kcal (2) G-P(sol) polarization free energy of solvation -75.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds