Wall clock time and date at job start Wed Apr 1 2020 00:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47244 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46846 * 120.00339 * 3 2 1 7 7 C 1.38822 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.65029 * 0.04161 * 9 7 2 11 11 C 1.54318 * 107.27075 * 181.02178 * 10 9 7 12 12 H 1.09009 * 110.86745 * 140.62935 * 11 10 9 13 13 O 1.42899 * 110.72284 * 263.82772 * 11 10 9 14 14 C 1.55153 * 102.94357 * 22.19680 * 11 10 9 15 15 H 1.08998 * 111.00969 * 82.56913 * 14 11 10 16 16 C 1.53006 * 111.00296 * 206.42085 * 14 11 10 17 17 N 1.46503 * 109.46747 * 184.99763 * 16 14 11 18 18 C 1.34780 * 119.99715 * 179.97438 * 17 16 14 19 19 O 1.21582 * 119.99635 * 0.02562 * 18 17 16 20 20 C 1.47554 * 119.99954 * 179.97438 * 18 17 16 21 21 C 1.38697 * 120.38270 * 354.08396 * 20 18 17 22 22 C 1.38977 * 120.53179 * 179.69790 * 21 20 18 23 23 C 1.36210 * 121.23716 * 0.57987 * 22 21 20 24 24 C 1.40710 * 120.20065 * 359.72275 * 23 22 21 25 25 N 1.33686 * 120.93481 * 180.02562 * 24 23 22 26 26 C 1.31066 * 121.33906 * 180.02562 * 25 24 23 27 27 C 1.39336 * 121.70728 * 359.94890 * 26 25 24 28 28 C 1.36676 * 119.87246 * 0.02562 * 27 26 25 29 29 C 1.40477 * 118.16810 * 359.97438 * 28 27 26 30 30 C 1.47421 * 125.64925 * 180.02562 * 9 7 2 31 31 H 0.96995 * 119.99463 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.88173 * 61.60503 * 10 9 7 33 33 H 1.08999 * 109.88374 * 300.44225 * 10 9 7 34 34 H 0.96699 * 114.00198 * 293.52437 * 13 11 10 35 35 H 1.08996 * 109.47222 * 304.99587 * 16 14 11 36 36 H 1.08998 * 109.46951 * 65.00005 * 16 14 11 37 37 H 0.97002 * 120.00232 * 0.02562 * 17 16 14 38 38 H 1.07990 * 119.73428 * 359.97438 * 21 20 18 39 39 H 1.08000 * 119.38141 * 180.25793 * 22 21 20 40 40 H 1.08000 * 119.89633 * 179.70596 * 23 22 21 41 41 H 1.08001 * 119.14479 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.06435 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.91867 * 180.02562 * 28 27 26 44 44 H 1.08997 * 110.36500 * 37.06425 * 30 9 7 45 45 H 1.09007 * 110.36342 * 274.74721 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5328 -0.0009 11 6 -0.4485 -4.0441 0.0255 12 1 -1.2994 -4.2542 0.6738 13 8 -0.6885 -4.5341 -1.2952 14 6 0.8516 -4.6562 0.6104 15 1 0.8564 -4.5966 1.6988 16 6 1.0367 -6.1009 0.1418 17 7 2.2055 -6.6836 0.8055 18 6 2.5634 -7.9567 0.5450 19 8 1.9164 -8.6212 -0.2411 20 6 3.7409 -8.5434 1.2131 21 6 4.5561 -7.7585 2.0150 22 6 5.6624 -8.3094 2.6507 23 6 5.9835 -9.6241 2.4969 24 6 5.1887 -10.4569 1.6877 25 7 5.4900 -11.7494 1.5268 26 6 4.7556 -12.5320 0.7746 27 6 3.6273 -12.0588 0.1079 28 6 3.2641 -10.7470 0.2309 29 6 4.0550 -9.9129 1.0384 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8400 0.0004 32 1 -0.5542 -2.0843 -0.9028 33 1 -0.5578 -2.0523 0.8827 34 1 -1.4900 -4.1818 -1.7059 35 1 0.1490 -6.6812 0.3936 36 1 1.1866 -6.1163 -0.9377 37 1 2.7214 -6.1535 1.4330 38 1 4.3267 -6.7120 2.1502 39 1 6.2821 -7.6821 3.2743 40 1 6.8509 -10.0285 2.9973 41 1 5.0319 -13.5708 0.6692 42 1 3.0409 -12.7274 -0.5049 43 1 2.3927 -10.3624 -0.2780 44 1 2.8325 -3.7406 0.6153 45 1 2.1667 -4.0419 -1.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958299797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:05 Heat of formation + Delta-G solvation = 8.133241 kcal Electronic energy + Delta-G solvation = -28726.904550 eV Core-core repulsion = 24710.344889 eV Total energy + Delta-G solvation = -4016.559661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28595 -39.60341 -38.33167 -37.16878 -35.11560 -34.68654 -33.52608 -32.29749 -30.82877 -30.76178 -29.41050 -27.77276 -25.73130 -24.84019 -24.00419 -23.65524 -22.72089 -20.92664 -20.28429 -19.76422 -18.46972 -17.82999 -17.38810 -17.06860 -16.61210 -16.09481 -15.87542 -15.37671 -15.04661 -14.87601 -14.52909 -14.43737 -14.06807 -14.00742 -13.76444 -13.43302 -13.39382 -12.99768 -12.75345 -12.61552 -12.38816 -12.05462 -11.87971 -11.64530 -11.46281 -11.26881 -10.85132 -10.72536 -10.68469 -10.54519 -10.37628 -10.12527 -10.05107 -9.83689 -9.40208 -9.22886 -9.09960 -9.08454 -8.70432 -8.53023 -6.91889 -5.79210 -3.12471 -0.12067 0.53902 1.51951 2.41106 3.04068 3.06214 3.35838 3.40444 3.41432 3.89172 3.98494 4.33875 4.41613 4.43562 4.53052 4.62076 4.65925 4.80054 4.84822 5.03639 5.06169 5.15918 5.26591 5.34402 5.48677 5.49543 5.52498 5.57023 5.69039 5.83267 5.86027 5.95556 5.99151 6.03082 6.07497 6.26690 6.31667 6.33589 6.42223 6.50521 6.56532 6.82610 7.33238 7.41051 7.43103 7.62348 7.68989 8.10062 8.15710 8.18802 9.13447 9.74073 10.39384 11.32776 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.002344 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.591971 B =11942.996450 C =13163.269538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.564 6.564 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.140 3.860 17 N -0.716 5.716 18 C 0.559 3.441 19 O -0.537 6.537 20 C -0.110 4.110 21 C -0.074 4.074 22 C -0.110 4.110 23 C -0.068 4.068 24 C 0.118 3.882 25 N -0.480 5.480 26 C 0.131 3.869 27 C -0.181 4.181 28 C -0.059 4.059 29 C -0.067 4.067 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.180 0.820 44 H 0.036 0.964 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -20.663 4.851 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.370 6.370 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.017 3.983 17 N -0.366 5.366 18 C 0.346 3.654 19 O -0.416 6.416 20 C -0.113 4.113 21 C -0.093 4.093 22 C -0.130 4.130 23 C -0.087 4.087 24 C -0.004 4.004 25 N -0.188 5.188 26 C -0.041 4.041 27 C -0.201 4.201 28 C -0.084 4.084 29 C -0.070 4.070 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.236 0.764 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.156 0.844 43 H 0.196 0.804 44 H 0.054 0.946 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.791 -21.408 4.887 22.985 hybrid contribution -0.529 1.890 -0.193 1.972 sum 6.262 -19.518 4.694 21.028 Atomic orbital electron populations 1.69918 1.04925 1.25257 1.57163 1.24803 0.95762 0.97745 1.02178 0.86169 0.78448 0.83031 0.77933 1.21132 1.21580 1.21138 1.19020 0.90432 0.82339 1.43848 0.90420 1.44360 1.01349 0.99938 1.87260 1.21858 0.85339 0.88339 1.01651 1.23127 0.95052 0.96265 0.83260 0.92489 1.86399 1.48892 1.71452 1.30243 1.22691 0.97295 0.93003 1.00024 0.89258 1.21252 0.86550 0.92319 0.98154 1.46075 1.31526 1.12809 1.46230 1.18058 0.83832 0.81842 0.81647 1.90554 1.54878 1.60010 1.36188 1.19932 0.97125 0.93576 1.00714 1.21513 0.93815 0.99900 0.94084 1.20859 0.97153 0.95217 0.99723 1.21005 0.98679 0.92868 0.96182 1.18858 0.93449 0.90975 0.97072 1.68051 1.30098 1.03628 1.16990 1.23007 0.90632 0.99553 0.90913 1.22065 0.98999 0.96995 1.02026 1.22700 0.99463 0.92743 0.93525 1.18639 0.96273 0.93396 0.98648 1.21586 0.93611 0.85798 0.97170 0.93651 0.93191 0.92928 0.77720 0.91419 0.90009 0.76405 0.84671 0.84352 0.84323 0.82411 0.84395 0.80379 0.94571 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.31 55.49 0.57 -25.79 16 2 C -0.01 -0.24 5.49 -17.42 -0.10 -0.34 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.19 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.81 3.39 -170.09 -0.58 -15.39 16 10 C 0.15 3.51 5.14 -3.07 -0.02 3.49 16 11 C 0.08 1.45 4.08 -24.90 -0.10 1.35 16 12 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 13 O -0.56 -9.49 12.24 -35.23 -0.43 -9.92 16 14 C -0.11 -1.78 2.97 -88.48 -0.26 -2.04 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.05 4.60 -4.04 -0.02 2.03 16 17 N -0.72 -8.99 5.45 -61.34 -0.33 -9.32 16 18 C 0.56 7.63 7.73 -12.46 -0.10 7.53 16 19 O -0.54 -8.66 13.41 5.29 0.07 -8.59 16 20 C -0.11 -1.31 5.90 -104.66 -0.62 -1.93 16 21 C -0.07 -0.69 9.51 -39.14 -0.37 -1.06 16 22 C -0.11 -0.89 9.92 -40.04 -0.40 -1.29 16 23 C -0.07 -0.65 9.96 -39.38 -0.39 -1.04 16 24 C 0.12 1.40 6.60 -84.88 -0.56 0.84 16 25 N -0.48 -5.58 10.34 -10.99 -0.11 -5.70 16 26 C 0.13 1.23 11.15 -17.47 -0.19 1.04 16 27 C -0.18 -1.72 10.03 -39.74 -0.40 -2.12 16 28 C -0.06 -0.71 9.29 -39.30 -0.37 -1.08 16 29 C -0.07 -0.84 5.76 -106.53 -0.61 -1.45 16 30 C 0.14 2.84 6.64 -2.54 -0.02 2.82 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.05 1.28 7.43 -51.93 -0.39 0.89 16 33 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 34 H 0.38 4.97 9.12 45.56 0.42 5.39 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.38 7.55 -51.93 -0.39 0.99 16 37 H 0.40 4.14 6.54 -40.82 -0.27 3.88 16 38 H 0.14 0.96 6.43 -52.49 -0.34 0.63 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.18 2.35 4.96 -52.51 -0.26 2.09 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.54 7.91 -51.92 -0.41 0.13 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.89 369.35 -9.90 -43.78 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.95 Total: 8.32 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -4.68 Total: 0.42 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.45 Total: -56.19 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.36 Total: -18.51 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.89 -9.90 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958299797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.917 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds