Wall clock time and date at job start Wed Apr 1 2020 00:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47244 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46846 * 120.00339 * 3 2 1 7 7 C 1.38822 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.65029 * 0.04161 * 9 7 2 11 11 C 1.54318 * 107.27075 * 181.02178 * 10 9 7 12 12 H 1.09009 * 110.86745 * 140.62935 * 11 10 9 13 13 O 1.42899 * 110.72284 * 263.82772 * 11 10 9 14 14 C 1.55153 * 102.94357 * 22.19680 * 11 10 9 15 15 H 1.08998 * 111.00969 * 82.56913 * 14 11 10 16 16 C 1.53006 * 111.00296 * 206.42085 * 14 11 10 17 17 N 1.46503 * 109.46747 * 184.99763 * 16 14 11 18 18 C 1.34780 * 119.99715 * 179.97438 * 17 16 14 19 19 O 1.21582 * 119.99635 * 0.02562 * 18 17 16 20 20 C 1.47554 * 119.99954 * 179.97438 * 18 17 16 21 21 C 1.38697 * 120.38270 * 354.08396 * 20 18 17 22 22 C 1.38977 * 120.53179 * 179.69790 * 21 20 18 23 23 C 1.36210 * 121.23716 * 0.57987 * 22 21 20 24 24 C 1.40710 * 120.20065 * 359.72275 * 23 22 21 25 25 N 1.33686 * 120.93481 * 180.02562 * 24 23 22 26 26 C 1.31066 * 121.33906 * 180.02562 * 25 24 23 27 27 C 1.39336 * 121.70728 * 359.94890 * 26 25 24 28 28 C 1.36676 * 119.87246 * 0.02562 * 27 26 25 29 29 C 1.40477 * 118.16810 * 359.97438 * 28 27 26 30 30 C 1.47421 * 125.64925 * 180.02562 * 9 7 2 31 31 H 0.96995 * 119.99463 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.88173 * 61.60503 * 10 9 7 33 33 H 1.08999 * 109.88374 * 300.44225 * 10 9 7 34 34 H 0.96699 * 114.00198 * 293.52437 * 13 11 10 35 35 H 1.08996 * 109.47222 * 304.99587 * 16 14 11 36 36 H 1.08998 * 109.46951 * 65.00005 * 16 14 11 37 37 H 0.97002 * 120.00232 * 0.02562 * 17 16 14 38 38 H 1.07990 * 119.73428 * 359.97438 * 21 20 18 39 39 H 1.08000 * 119.38141 * 180.25793 * 22 21 20 40 40 H 1.08000 * 119.89633 * 179.70596 * 23 22 21 41 41 H 1.08001 * 119.14479 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.06435 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.91867 * 180.02562 * 28 27 26 44 44 H 1.08997 * 110.36500 * 37.06425 * 30 9 7 45 45 H 1.09007 * 110.36342 * 274.74721 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5328 -0.0009 11 6 -0.4485 -4.0441 0.0255 12 1 -1.2994 -4.2542 0.6738 13 8 -0.6885 -4.5341 -1.2952 14 6 0.8516 -4.6562 0.6104 15 1 0.8564 -4.5966 1.6988 16 6 1.0367 -6.1009 0.1418 17 7 2.2055 -6.6836 0.8055 18 6 2.5634 -7.9567 0.5450 19 8 1.9164 -8.6212 -0.2411 20 6 3.7409 -8.5434 1.2131 21 6 4.5561 -7.7585 2.0150 22 6 5.6624 -8.3094 2.6507 23 6 5.9835 -9.6241 2.4969 24 6 5.1887 -10.4569 1.6877 25 7 5.4900 -11.7494 1.5268 26 6 4.7556 -12.5320 0.7746 27 6 3.6273 -12.0588 0.1079 28 6 3.2641 -10.7470 0.2309 29 6 4.0550 -9.9129 1.0384 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8400 0.0004 32 1 -0.5542 -2.0843 -0.9028 33 1 -0.5578 -2.0523 0.8827 34 1 -1.4900 -4.1818 -1.7059 35 1 0.1490 -6.6812 0.3936 36 1 1.1866 -6.1163 -0.9377 37 1 2.7214 -6.1535 1.4330 38 1 4.3267 -6.7120 2.1502 39 1 6.2821 -7.6821 3.2743 40 1 6.8509 -10.0285 2.9973 41 1 5.0319 -13.5708 0.6692 42 1 3.0409 -12.7274 -0.5049 43 1 2.3927 -10.3624 -0.2780 44 1 2.8325 -3.7406 0.6153 45 1 2.1667 -4.0419 -1.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958299797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:04 Heat of formation + Delta-G solvation = -16.659648 kcal Electronic energy + Delta-G solvation = -28727.979650 eV Core-core repulsion = 24710.344889 eV Total energy + Delta-G solvation = -4017.634761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10249 -40.67119 -39.76040 -37.92718 -36.41898 -36.20617 -34.33220 -33.99517 -31.97764 -31.54539 -30.74248 -29.38613 -27.29884 -25.89861 -25.21200 -24.43005 -23.80854 -22.25910 -21.74561 -21.07148 -19.35703 -19.03997 -18.70107 -18.10787 -17.77678 -17.12417 -16.90735 -16.78940 -16.45573 -15.79044 -15.76558 -15.49715 -15.32852 -15.31482 -14.81032 -14.74111 -14.37619 -14.31596 -14.10453 -13.78131 -13.57249 -13.14320 -13.12234 -13.01717 -12.72597 -12.63120 -12.39911 -12.32393 -12.09938 -11.91070 -11.78176 -11.57556 -11.51640 -11.23982 -10.78743 -10.71668 -10.29382 -10.19682 -9.82554 -9.32387 -8.90817 -7.85826 -5.20825 -0.90007 -0.20063 0.67286 1.46624 1.49322 1.55404 1.64057 2.01357 2.16803 2.49124 3.10121 3.26973 3.31005 3.35808 3.50232 3.56165 3.74386 3.81012 3.85540 3.90918 3.94843 3.99888 4.07340 4.17825 4.41295 4.43223 4.45784 4.58552 4.63877 4.77885 4.78617 4.84410 4.91339 4.98291 5.02975 5.11353 5.24513 5.30646 5.34236 5.42369 5.42908 5.53203 5.57967 5.70579 5.79117 6.17861 6.43065 6.85746 6.92906 7.09339 7.11006 7.76283 8.40464 9.24210 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.002344 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.591971 B =11942.996450 C =13163.269538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.160 3.840 11 C 0.095 3.905 12 H 0.088 0.912 13 O -0.571 6.571 14 C -0.092 4.092 15 H 0.111 0.889 16 C 0.157 3.843 17 N -0.708 5.708 18 C 0.558 3.442 19 O -0.569 6.569 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.104 4.104 23 C -0.070 4.070 24 C 0.094 3.906 25 N -0.497 5.497 26 C 0.128 3.872 27 C -0.171 4.171 28 C -0.089 4.089 29 C -0.085 4.085 30 C 0.142 3.858 31 H 0.247 0.753 32 H 0.012 0.988 33 H 0.024 0.976 34 H 0.391 0.609 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.157 0.843 41 H 0.194 0.806 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.054 0.946 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -21.779 6.319 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.035 3.965 12 H 0.105 0.895 13 O -0.379 6.379 14 C -0.112 4.112 15 H 0.129 0.871 16 C 0.033 3.967 17 N -0.359 5.359 18 C 0.347 3.653 19 O -0.450 6.450 20 C -0.141 4.141 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.026 4.026 25 N -0.205 5.205 26 C -0.044 4.044 27 C -0.191 4.191 28 C -0.114 4.114 29 C -0.088 4.088 30 C 0.017 3.983 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.176 0.824 39 H 0.192 0.808 40 H 0.175 0.825 41 H 0.211 0.789 42 H 0.183 0.817 43 H 0.179 0.821 44 H 0.073 0.927 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 8.542 -22.539 6.365 24.930 hybrid contribution -1.017 2.167 -0.690 2.491 sum 7.525 -20.372 5.675 22.447 Atomic orbital electron populations 1.70137 1.06206 1.25344 1.58380 1.25626 0.96651 1.00957 1.02687 0.85163 0.77150 0.78864 0.78226 1.20721 1.22207 1.19923 1.19426 0.91055 0.83651 1.42887 0.89890 1.44685 1.02312 1.01075 1.86989 1.21679 0.84525 0.91866 0.98502 1.22976 0.96854 0.92442 0.84258 0.89478 1.86382 1.50163 1.71158 1.30184 1.22579 0.94930 0.92803 1.00882 0.87115 1.20907 0.87573 0.91396 0.96830 1.45898 1.31083 1.12687 1.46225 1.18372 0.84056 0.81702 0.81178 1.90548 1.56056 1.60807 1.37632 1.19840 0.97587 0.93905 1.02730 1.21864 0.93125 1.00688 0.92281 1.21247 0.96768 0.95071 0.99268 1.21339 0.98770 0.93286 0.95471 1.19207 0.93869 0.91589 0.97976 1.68102 1.30804 1.03811 1.17785 1.23600 0.90060 1.00881 0.89898 1.22379 0.98960 0.96343 1.01375 1.22663 0.99731 0.94165 0.94842 1.18840 0.96868 0.93925 0.99180 1.21706 0.95312 0.84315 0.96985 0.94404 0.96933 0.95797 0.75993 0.90921 0.92395 0.74947 0.82363 0.80753 0.82518 0.78911 0.81717 0.82101 0.92743 0.97153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.68 10.31 21.66 0.22 -55.46 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.24 -13.13 10.28 84.04 0.86 -12.27 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -30.83 3.39 -692.03 -2.35 -33.18 16 10 C 0.16 7.45 5.14 86.73 0.45 7.89 16 11 C 0.09 3.23 4.08 31.78 0.13 3.36 16 12 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 13 O -0.57 -18.86 12.24 -148.98 -1.82 -20.68 16 14 C -0.09 -2.82 2.97 -9.41 -0.03 -2.85 16 15 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 16 C 0.16 4.39 4.60 86.38 0.40 4.79 16 17 N -0.71 -16.77 5.45 -466.24 -2.54 -19.31 16 18 C 0.56 15.09 7.73 86.70 0.67 15.76 16 19 O -0.57 -18.83 13.41 -3.98 -0.05 -18.89 16 20 C -0.14 -3.18 5.90 -19.89 -0.12 -3.29 16 21 C -0.06 -0.99 9.51 22.56 0.21 -0.77 16 22 C -0.10 -1.37 9.92 21.97 0.22 -1.15 16 23 C -0.07 -1.18 9.96 22.40 0.22 -0.95 16 24 C 0.09 2.15 6.60 40.27 0.27 2.42 16 25 N -0.50 -10.95 10.34 -188.68 -1.95 -12.90 16 26 C 0.13 2.20 11.15 85.07 0.95 3.15 16 27 C -0.17 -3.11 10.03 22.17 0.22 -2.88 16 28 C -0.09 -2.18 9.29 22.45 0.21 -1.98 16 29 C -0.09 -2.14 5.76 -21.10 -0.12 -2.26 16 30 C 0.14 5.45 6.64 86.85 0.58 6.03 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.01 0.67 7.43 -2.39 -0.02 0.65 16 33 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 34 H 0.39 10.17 9.12 -74.06 -0.68 9.49 16 35 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.94 7.55 -2.39 -0.02 1.92 16 37 H 0.41 7.53 6.54 -92.71 -0.61 6.92 16 38 H 0.16 1.71 6.43 -2.92 -0.02 1.69 16 39 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.16 4.50 4.96 -3.20 -0.02 4.49 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.01 0.44 7.91 -2.38 -0.02 0.42 16 Total: -1.00 -76.54 369.35 -1.12 -77.66 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.23 Total: 24.25 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.58 Total: 11.76 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.62 Total: -120.85 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.88 Total: -39.57 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.54 -1.12 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958299797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.997 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds