Wall clock time and date at job start Wed Apr 1 2020 00:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47059 * 299.99990 * 3 2 1 6 6 H 1.48509 * 109.46801 * 59.99906 * 3 2 1 7 7 C 1.38811 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99721 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.47295 * 125.79250 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.30452 * 178.92288 * 10 9 7 12 12 H 1.08998 * 110.87201 * 219.38670 * 11 10 9 13 13 O 1.42897 * 110.72211 * 96.18218 * 11 10 9 14 14 C 1.55160 * 102.94400 * 337.81949 * 11 10 9 15 15 H 1.08999 * 111.03510 * 277.41420 * 14 11 10 16 16 C 1.53000 * 111.00338 * 153.57935 * 14 11 10 17 17 N 1.46499 * 109.46958 * 181.35392 * 16 14 11 18 18 C 1.34776 * 120.00106 * 179.97438 * 17 16 14 19 19 O 1.21588 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.47553 * 120.00226 * 179.97438 * 18 17 16 21 21 C 1.38692 * 120.38570 * 354.08002 * 20 18 17 22 22 C 1.38972 * 120.53294 * 179.69445 * 21 20 18 23 23 C 1.36209 * 121.23686 * 0.58602 * 22 21 20 24 24 C 1.40706 * 120.20262 * 359.71699 * 23 22 21 25 25 N 1.33691 * 120.95130 * 179.97438 * 24 23 22 26 26 C 1.31060 * 121.34701 * 180.02562 * 25 24 23 27 27 C 1.39340 * 121.70688 * 0.02562 * 26 25 24 28 28 C 1.36672 * 119.86891 * 359.97438 * 27 26 25 29 29 C 1.40467 * 118.16701 * 0.03868 * 28 27 26 30 30 C 1.47423 * 125.65168 * 180.02562 * 9 7 2 31 31 H 0.97006 * 119.99891 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.85390 * 59.49918 * 10 9 7 33 33 H 1.08997 * 110.00221 * 298.43466 * 10 9 7 34 34 H 0.96706 * 113.99447 * 66.47500 * 13 11 10 35 35 H 1.09001 * 109.46785 * 301.34777 * 16 14 11 36 36 H 1.08995 * 109.47238 * 61.34900 * 16 14 11 37 37 H 0.97001 * 119.99671 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.73446 * 359.97438 * 21 20 18 39 39 H 1.07996 * 119.38053 * 180.27952 * 22 21 20 40 40 H 1.07995 * 119.89970 * 179.70520 * 23 22 21 41 41 H 1.08000 * 119.14899 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.06384 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.91712 * 180.02562 * 28 27 26 44 44 H 1.08998 * 110.36742 * 85.25722 * 30 9 7 45 45 H 1.09002 * 110.36210 * 323.05202 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1399 -2.5367 -0.0005 11 6 -0.4479 -4.0486 -0.0282 12 1 -1.2979 -4.2599 -0.6769 13 8 -0.6873 -4.5401 1.2920 14 6 0.8538 -4.6578 -0.6131 15 1 0.8592 -4.5978 -1.7014 16 6 1.0414 -6.1025 -0.1455 17 7 2.2938 -6.6331 -0.6898 18 6 2.6692 -7.8965 -0.4080 19 8 1.9688 -8.5957 0.2983 20 6 3.9303 -8.4312 -0.9567 21 6 4.6738 -7.6864 -1.8601 22 6 5.8652 -8.1844 -2.3740 23 6 6.3287 -9.4146 -2.0175 24 6 5.6044 -10.2079 -1.1087 25 7 6.0452 -11.4176 -0.7488 26 6 5.3766 -12.1633 0.0965 27 6 4.1767 -11.7349 0.6606 28 6 3.6710 -10.5078 0.3344 29 6 4.3918 -9.7133 -0.5723 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5607 -2.0564 -0.8839 33 1 -0.5600 -2.0891 0.9001 34 1 -1.4896 -4.1895 1.7027 35 1 1.0782 -6.1299 0.9436 36 1 0.2067 -6.7092 -0.4963 37 1 2.8527 -6.0751 -1.2529 38 1 4.3265 -6.7098 -2.1632 39 1 6.4316 -7.5868 -3.0728 40 1 7.2549 -9.7822 -2.4337 41 1 5.7657 -13.1349 0.3629 42 1 3.6477 -12.3710 1.3549 43 1 2.7426 -10.1587 0.7619 44 1 2.1667 -4.0419 1.0178 45 1 2.8338 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958299800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:11 Heat of formation + Delta-G solvation = 7.878088 kcal Electronic energy + Delta-G solvation = -28770.385039 eV Core-core repulsion = 24753.814315 eV Total energy + Delta-G solvation = -4016.570725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27919 -39.60203 -38.32586 -37.16204 -35.11888 -34.67436 -33.51793 -32.29054 -30.82196 -30.75656 -29.40985 -27.77182 -25.73741 -24.84363 -24.00323 -23.64870 -22.72844 -20.93410 -20.25286 -19.75532 -18.47146 -17.82475 -17.39450 -17.05895 -16.61634 -16.09775 -15.86548 -15.36493 -15.03989 -14.88746 -14.52703 -14.42661 -14.06594 -14.01477 -13.76921 -13.47919 -13.34681 -13.04479 -12.70104 -12.62864 -12.38315 -12.04551 -11.87416 -11.63556 -11.46851 -11.27606 -10.87944 -10.70427 -10.67210 -10.53290 -10.37880 -10.10783 -10.03587 -9.85010 -9.38751 -9.23739 -9.09338 -9.07948 -8.72027 -8.52258 -6.92253 -5.80046 -3.13097 -0.11285 0.54693 1.52809 2.41792 3.02340 3.09238 3.34675 3.40509 3.42776 3.90046 3.99216 4.34369 4.41401 4.43837 4.53783 4.62686 4.65937 4.80865 4.85521 5.03299 5.06797 5.16469 5.25777 5.34881 5.47907 5.50038 5.52474 5.57489 5.69755 5.82987 5.86184 5.96102 5.98465 6.02942 6.08298 6.27246 6.31975 6.32798 6.43092 6.50503 6.56265 6.82539 7.32169 7.41703 7.42827 7.63173 7.68819 8.10592 8.14516 8.18106 9.12407 9.73295 10.38813 11.32289 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.002393 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.766919 B =11698.136823 C =12881.486807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.058 0.942 13 O -0.564 6.564 14 C -0.111 4.111 15 H 0.089 0.911 16 C 0.139 3.861 17 N -0.715 5.715 18 C 0.559 3.441 19 O -0.537 6.537 20 C -0.109 4.109 21 C -0.074 4.074 22 C -0.110 4.110 23 C -0.069 4.069 24 C 0.118 3.882 25 N -0.480 5.480 26 C 0.131 3.869 27 C -0.181 4.181 28 C -0.059 4.059 29 C -0.067 4.067 30 C 0.144 3.856 31 H 0.252 0.748 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.376 0.624 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.180 0.820 44 H 0.026 0.974 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -20.282 -3.820 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.076 0.924 13 O -0.370 6.370 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.016 3.984 17 N -0.366 5.366 18 C 0.346 3.654 19 O -0.417 6.417 20 C -0.113 4.113 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.087 4.087 24 C -0.003 4.003 25 N -0.188 5.188 26 C -0.041 4.041 27 C -0.201 4.201 28 C -0.084 4.084 29 C -0.070 4.070 30 C 0.018 3.982 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.223 0.777 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.156 0.844 43 H 0.196 0.804 44 H 0.043 0.957 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.569 -21.034 -3.859 22.685 hybrid contribution -0.587 1.883 0.151 1.978 sum 6.983 -19.151 -3.708 20.718 Atomic orbital electron populations 1.69936 1.04930 1.25026 1.57335 1.24802 0.95762 0.97749 1.02231 0.86023 0.78720 0.83627 0.77265 1.20477 1.21730 1.21724 1.19109 0.90476 0.82293 1.43570 0.90300 1.44431 1.01319 0.99923 1.87238 1.21896 0.85325 0.88353 1.01675 1.23109 0.95076 0.96211 0.83272 0.92450 1.86398 1.48792 1.71503 1.30296 1.22694 0.97286 0.93019 1.00042 0.89271 1.21256 0.84228 0.92927 0.99985 1.46055 1.25080 1.13295 1.52145 1.18058 0.84903 0.81895 0.80514 1.90553 1.54831 1.57650 1.38647 1.19931 0.96245 0.94923 1.00220 1.21504 0.94079 0.99248 0.94496 1.20854 0.96019 0.95866 1.00206 1.21001 0.99387 0.93249 0.95097 1.18856 0.92397 0.92033 0.97055 1.68046 1.32792 1.04493 1.13444 1.23006 0.91312 0.98670 0.91109 1.22067 0.97853 0.97858 1.02311 1.22700 1.00490 0.92542 0.92690 1.18639 0.95693 0.94297 0.98332 1.21565 0.93599 0.85845 0.97171 0.93755 0.92914 0.93170 0.77713 0.89842 0.91507 0.76371 0.84703 0.84358 0.84325 0.82413 0.84394 0.80368 0.95664 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.33 55.49 0.57 -25.77 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.78 3.40 -169.87 -0.58 -15.36 16 10 C 0.15 3.48 5.15 -2.92 -0.02 3.47 16 11 C 0.08 1.45 4.09 -24.90 -0.10 1.35 16 12 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 13 O -0.56 -9.46 12.09 -35.23 -0.43 -9.89 16 14 C -0.11 -1.78 3.03 -88.47 -0.27 -2.05 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.03 4.74 -4.04 -0.02 2.01 16 17 N -0.72 -9.06 5.36 -61.34 -0.33 -9.39 16 18 C 0.56 7.68 7.73 -12.46 -0.10 7.58 16 19 O -0.54 -8.68 13.40 5.29 0.07 -8.61 16 20 C -0.11 -1.32 5.90 -104.66 -0.62 -1.94 16 21 C -0.07 -0.70 9.51 -39.14 -0.37 -1.07 16 22 C -0.11 -0.90 9.92 -40.04 -0.40 -1.30 16 23 C -0.07 -0.66 9.96 -39.38 -0.39 -1.05 16 24 C 0.12 1.41 6.60 -84.88 -0.56 0.85 16 25 N -0.48 -5.63 10.34 -10.99 -0.11 -5.75 16 26 C 0.13 1.25 11.15 -17.47 -0.19 1.05 16 27 C -0.18 -1.74 10.03 -39.74 -0.40 -2.14 16 28 C -0.06 -0.72 9.29 -39.31 -0.37 -1.08 16 29 C -0.07 -0.85 5.76 -106.53 -0.61 -1.46 16 30 C 0.14 2.83 6.39 -2.53 -0.02 2.81 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 1.32 7.39 -51.93 -0.38 0.94 16 33 H 0.05 1.28 7.44 -51.93 -0.39 0.89 16 34 H 0.38 4.96 9.12 45.56 0.42 5.37 16 35 H 0.08 1.41 7.42 -51.93 -0.39 1.03 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.40 4.24 6.41 -40.82 -0.26 3.98 16 38 H 0.14 0.96 6.43 -52.49 -0.34 0.63 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.18 2.37 4.96 -52.51 -0.26 2.11 16 44 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -33.89 368.94 -9.89 -43.78 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.94 Total: 8.41 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -4.68 Total: 0.41 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.45 Total: -56.27 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.36 Total: -18.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.89 -9.89 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958299800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.661 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds