Wall clock time and date at job start Wed Apr 1 2020 00:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47059 * 299.99990 * 3 2 1 6 6 H 1.48509 * 109.46801 * 59.99906 * 3 2 1 7 7 C 1.38811 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99721 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.47295 * 125.79250 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.30452 * 178.92288 * 10 9 7 12 12 H 1.08998 * 110.87201 * 219.38670 * 11 10 9 13 13 O 1.42897 * 110.72211 * 96.18218 * 11 10 9 14 14 C 1.55160 * 102.94400 * 337.81949 * 11 10 9 15 15 H 1.08999 * 111.03510 * 277.41420 * 14 11 10 16 16 C 1.53000 * 111.00338 * 153.57935 * 14 11 10 17 17 N 1.46499 * 109.46958 * 181.35392 * 16 14 11 18 18 C 1.34776 * 120.00106 * 179.97438 * 17 16 14 19 19 O 1.21588 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.47553 * 120.00226 * 179.97438 * 18 17 16 21 21 C 1.38692 * 120.38570 * 354.08002 * 20 18 17 22 22 C 1.38972 * 120.53294 * 179.69445 * 21 20 18 23 23 C 1.36209 * 121.23686 * 0.58602 * 22 21 20 24 24 C 1.40706 * 120.20262 * 359.71699 * 23 22 21 25 25 N 1.33691 * 120.95130 * 179.97438 * 24 23 22 26 26 C 1.31060 * 121.34701 * 180.02562 * 25 24 23 27 27 C 1.39340 * 121.70688 * 0.02562 * 26 25 24 28 28 C 1.36672 * 119.86891 * 359.97438 * 27 26 25 29 29 C 1.40467 * 118.16701 * 0.03868 * 28 27 26 30 30 C 1.47423 * 125.65168 * 180.02562 * 9 7 2 31 31 H 0.97006 * 119.99891 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.85390 * 59.49918 * 10 9 7 33 33 H 1.08997 * 110.00221 * 298.43466 * 10 9 7 34 34 H 0.96706 * 113.99447 * 66.47500 * 13 11 10 35 35 H 1.09001 * 109.46785 * 301.34777 * 16 14 11 36 36 H 1.08995 * 109.47238 * 61.34900 * 16 14 11 37 37 H 0.97001 * 119.99671 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.73446 * 359.97438 * 21 20 18 39 39 H 1.07996 * 119.38053 * 180.27952 * 22 21 20 40 40 H 1.07995 * 119.89970 * 179.70520 * 23 22 21 41 41 H 1.08000 * 119.14899 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.06384 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.91712 * 180.02562 * 28 27 26 44 44 H 1.08998 * 110.36742 * 85.25722 * 30 9 7 45 45 H 1.09002 * 110.36210 * 323.05202 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1399 -2.5367 -0.0005 11 6 -0.4479 -4.0486 -0.0282 12 1 -1.2979 -4.2599 -0.6769 13 8 -0.6873 -4.5401 1.2920 14 6 0.8538 -4.6578 -0.6131 15 1 0.8592 -4.5978 -1.7014 16 6 1.0414 -6.1025 -0.1455 17 7 2.2938 -6.6331 -0.6898 18 6 2.6692 -7.8965 -0.4080 19 8 1.9688 -8.5957 0.2983 20 6 3.9303 -8.4312 -0.9567 21 6 4.6738 -7.6864 -1.8601 22 6 5.8652 -8.1844 -2.3740 23 6 6.3287 -9.4146 -2.0175 24 6 5.6044 -10.2079 -1.1087 25 7 6.0452 -11.4176 -0.7488 26 6 5.3766 -12.1633 0.0965 27 6 4.1767 -11.7349 0.6606 28 6 3.6710 -10.5078 0.3344 29 6 4.3918 -9.7133 -0.5723 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5607 -2.0564 -0.8839 33 1 -0.5600 -2.0891 0.9001 34 1 -1.4896 -4.1895 1.7027 35 1 1.0782 -6.1299 0.9436 36 1 0.2067 -6.7092 -0.4963 37 1 2.8527 -6.0751 -1.2529 38 1 4.3265 -6.7098 -2.1632 39 1 6.4316 -7.5868 -3.0728 40 1 7.2549 -9.7822 -2.4337 41 1 5.7657 -13.1349 0.3629 42 1 3.6477 -12.3710 1.3549 43 1 2.7426 -10.1587 0.7619 44 1 2.1667 -4.0419 1.0178 45 1 2.8338 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958299800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:11 Heat of formation + Delta-G solvation = -16.865020 kcal Electronic energy + Delta-G solvation = -28771.457981 eV Core-core repulsion = 24753.814315 eV Total energy + Delta-G solvation = -4017.643667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10303 -40.67461 -39.74959 -37.92720 -36.42150 -36.19764 -34.33177 -33.98688 -31.97615 -31.54564 -30.74398 -29.37870 -27.31287 -25.90100 -25.21438 -24.43103 -23.82512 -22.28300 -21.68313 -21.07553 -19.36593 -19.04550 -18.69614 -18.09613 -17.79400 -17.13414 -16.90476 -16.79478 -16.43953 -15.79593 -15.76792 -15.48035 -15.34987 -15.31296 -14.85424 -14.72111 -14.39191 -14.29717 -14.11256 -13.77609 -13.56582 -13.14470 -13.12695 -13.03317 -12.74501 -12.68249 -12.34563 -12.29591 -12.06603 -11.88869 -11.77151 -11.60637 -11.50853 -11.23804 -10.79769 -10.73340 -10.28990 -10.19680 -9.82564 -9.32352 -8.91046 -7.86557 -5.21268 -0.89970 -0.20079 0.67309 1.46329 1.47260 1.57167 1.63948 2.00882 2.17605 2.48494 3.10185 3.27233 3.30929 3.35750 3.50290 3.55283 3.74261 3.80989 3.85575 3.90864 3.94637 3.99924 4.07263 4.17843 4.41121 4.43242 4.45814 4.58808 4.63352 4.77862 4.78568 4.83127 4.91582 4.99010 5.02931 5.11270 5.24462 5.30928 5.35301 5.42223 5.42490 5.52581 5.57933 5.70330 5.79112 6.17191 6.42935 6.85687 6.92737 7.08649 7.10854 7.75430 8.40110 9.24147 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.002393 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.766919 B =11698.136823 C =12881.486807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.238 4.238 8 H 0.084 0.916 9 N -0.624 5.624 10 C 0.159 3.841 11 C 0.095 3.905 12 H 0.088 0.912 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.111 0.889 16 C 0.155 3.845 17 N -0.707 5.707 18 C 0.558 3.442 19 O -0.568 6.568 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.104 4.104 23 C -0.070 4.070 24 C 0.094 3.906 25 N -0.497 5.497 26 C 0.128 3.872 27 C -0.171 4.171 28 C -0.089 4.089 29 C -0.086 4.086 30 C 0.142 3.858 31 H 0.246 0.754 32 H 0.024 0.976 33 H 0.013 0.987 34 H 0.391 0.609 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.157 0.843 41 H 0.194 0.806 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.010 0.990 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.577 -21.383 -5.205 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.035 3.965 12 H 0.106 0.894 13 O -0.379 6.379 14 C -0.112 4.112 15 H 0.129 0.871 16 C 0.031 3.969 17 N -0.359 5.359 18 C 0.347 3.653 19 O -0.450 6.450 20 C -0.141 4.141 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.026 4.026 25 N -0.205 5.205 26 C -0.044 4.044 27 C -0.191 4.191 28 C -0.114 4.114 29 C -0.088 4.088 30 C 0.017 3.983 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.240 0.760 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.177 0.823 39 H 0.193 0.807 40 H 0.175 0.825 41 H 0.211 0.789 42 H 0.183 0.817 43 H 0.179 0.821 44 H 0.028 0.972 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.401 -22.151 -5.252 24.630 hybrid contribution -1.099 2.160 0.628 2.504 sum 8.302 -19.990 -4.624 22.134 Atomic orbital electron populations 1.70146 1.06216 1.25187 1.58566 1.25618 0.96649 1.00940 1.02781 0.85028 0.78276 0.79542 0.76601 1.18930 1.21759 1.22360 1.19493 0.91047 0.83596 1.42538 0.89839 1.44754 1.02294 1.01070 1.86955 1.21723 0.84501 0.91890 0.98527 1.22960 0.96884 0.92378 0.84272 0.89421 1.86382 1.50062 1.71204 1.30241 1.22588 0.94947 0.92823 1.00890 0.87137 1.20929 0.85417 0.91997 0.98529 1.45886 1.24624 1.13225 1.52140 1.18368 0.85274 0.81715 0.79945 1.90546 1.55946 1.58475 1.40063 1.19845 0.96329 0.95592 1.02317 1.21864 0.93776 0.99634 0.92686 1.21247 0.95512 0.95574 1.00013 1.21337 0.99758 0.93502 0.94288 1.19208 0.92665 0.92700 0.98064 1.68096 1.33409 1.04734 1.14255 1.23599 0.90966 0.99684 0.90190 1.22380 0.97796 0.97064 1.01831 1.22663 1.00616 0.94080 0.94059 1.18844 0.96325 0.94837 0.98843 1.21682 0.95309 0.84342 0.96976 0.94425 0.95782 0.96907 0.75992 0.92264 0.90801 0.75001 0.82323 0.80729 0.82515 0.78905 0.81722 0.82111 0.97191 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.70 10.33 21.65 0.22 -55.47 16 2 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 3 Si 0.98 44.76 29.55 68.60 2.03 46.79 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -12.92 10.28 84.03 0.86 -12.05 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -30.77 3.40 -691.33 -2.35 -33.12 16 10 C 0.16 7.40 5.15 86.67 0.45 7.84 16 11 C 0.10 3.23 4.09 31.78 0.13 3.36 16 12 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 13 O -0.57 -18.81 12.09 -148.98 -1.80 -20.61 16 14 C -0.09 -2.83 3.03 -9.40 -0.03 -2.86 16 15 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 16 C 0.16 4.33 4.74 86.38 0.41 4.74 16 17 N -0.71 -16.94 5.36 -466.26 -2.50 -19.43 16 18 C 0.56 15.18 7.73 86.70 0.67 15.85 16 19 O -0.57 -18.85 13.40 -3.99 -0.05 -18.90 16 20 C -0.14 -3.21 5.90 -19.89 -0.12 -3.33 16 21 C -0.06 -0.99 9.51 22.55 0.21 -0.78 16 22 C -0.10 -1.39 9.92 21.97 0.22 -1.17 16 23 C -0.07 -1.19 9.96 22.40 0.22 -0.97 16 24 C 0.09 2.18 6.60 40.27 0.27 2.44 16 25 N -0.50 -11.06 10.34 -188.69 -1.95 -13.01 16 26 C 0.13 2.23 11.15 85.07 0.95 3.18 16 27 C -0.17 -3.16 10.03 22.17 0.22 -2.93 16 28 C -0.09 -2.21 9.29 22.45 0.21 -2.01 16 29 C -0.09 -2.17 5.76 -21.10 -0.12 -2.29 16 30 C 0.14 5.43 6.39 86.85 0.56 5.99 16 31 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 32 H 0.02 1.24 7.39 -2.39 -0.02 1.22 16 33 H 0.01 0.68 7.44 -2.39 -0.02 0.66 16 34 H 0.39 10.14 9.12 -74.05 -0.68 9.46 16 35 H 0.06 1.98 7.42 -2.39 -0.02 1.97 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.41 7.73 6.41 -92.71 -0.59 7.13 16 38 H 0.16 1.71 6.43 -2.91 -0.02 1.69 16 39 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 43 H 0.16 4.55 4.96 -3.23 -0.02 4.54 16 44 H 0.01 0.43 8.00 -2.39 -0.02 0.41 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -76.57 368.94 -1.05 -77.63 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.22 Total: 24.38 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.57 Total: 11.75 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.58 Total: -121.04 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.86 Total: -39.51 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.57 -1.05 -77.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958299800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.762 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds