Wall clock time and date at job start Tue Mar 31 2020 23:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47333 * 240.00343 * 3 2 1 5 5 H 1.48497 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47430 * 120.00237 * 3 2 1 7 7 C 1.38811 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00360 * 170.66307 * 7 2 1 9 9 N 1.36943 * 120.00187 * 350.66611 * 7 2 1 10 10 C 1.48137 * 127.84012 * 164.90274 * 9 7 2 11 11 C 1.54388 * 104.62097 * 140.41153 * 10 9 7 12 12 H 1.08999 * 118.18558 * 244.20087 * 11 10 9 13 13 C 1.54143 * 104.96372 * 23.82620 * 11 10 9 14 14 H 1.09005 * 121.79232 * 222.19795 * 13 11 10 15 15 C 1.51697 * 127.60934 * 345.17168 * 9 7 2 16 16 C 1.53000 * 118.12248 * 87.18888 * 11 10 9 17 17 H 1.08998 * 117.44512 * 16.05969 * 16 11 10 18 18 N 1.46504 * 117.44308 * 160.81059 * 16 11 10 19 19 C 1.34772 * 119.99994 * 223.99775 * 18 16 11 20 20 O 1.21276 * 119.99915 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99802 * 179.97438 * 19 18 16 22 22 N 1.46497 * 109.47006 * 180.02562 * 21 19 18 23 23 C 1.46736 * 125.62724 * 270.00130 * 22 21 19 24 24 C 1.50819 * 106.25701 * 180.02562 * 23 22 21 25 25 C 1.37575 * 133.24316 * 179.97438 * 24 23 22 26 26 C 1.38470 * 119.95888 * 180.02562 * 25 24 23 27 27 C 1.38383 * 120.18619 * 359.97438 * 26 25 24 28 28 C 1.37936 * 120.32596 * 0.04204 * 27 26 25 29 29 C 1.39625 * 119.82437 * 359.95609 * 28 27 26 30 30 C 1.34417 * 125.62461 * 90.02536 * 22 21 19 31 31 O 1.21556 * 124.85839 * 0.24403 * 30 22 21 32 32 H 0.96996 * 120.00474 * 359.97438 * 1 2 3 33 33 H 1.09000 * 110.41285 * 21.62288 * 10 9 7 34 34 H 1.09009 * 110.40501 * 259.19332 * 10 9 7 35 35 H 1.08992 * 111.95998 * 100.90443 * 15 9 7 36 36 H 1.08997 * 110.48988 * 337.32810 * 15 9 7 37 37 H 0.96996 * 119.99521 * 44.00070 * 18 16 11 38 38 H 1.09005 * 109.47323 * 60.00214 * 21 19 18 39 39 H 1.09001 * 109.47336 * 300.00236 * 21 19 18 40 40 H 1.08999 * 110.09520 * 60.82073 * 23 22 21 41 41 H 1.09005 * 110.14775 * 299.24705 * 23 22 21 42 42 H 1.08005 * 120.02204 * 0.02562 * 25 24 23 43 43 H 1.07996 * 119.90784 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.84044 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.09222 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2083 -0.1523 9 7 1.3391 -2.3804 0.1913 10 6 1.8227 -3.7552 -0.0740 11 6 1.2861 -4.5918 1.1074 12 1 2.0077 -5.0451 1.7871 13 6 0.0628 -3.8100 1.6254 14 1 -0.1271 -3.6809 2.6910 15 6 -0.0707 -2.5674 0.7189 16 6 -0.1173 -5.1897 0.9890 17 1 -0.5639 -5.2302 -0.0045 18 7 -0.4534 -6.3047 1.8779 19 6 -1.1053 -7.3801 1.3932 20 8 -1.4132 -7.4250 0.2210 21 6 -1.4504 -8.5272 2.3075 22 7 -2.1505 -9.5648 1.5462 23 6 -3.6030 -9.6528 1.3570 24 6 -3.8451 -10.8778 0.5112 25 6 -4.9828 -11.4689 0.0123 26 6 -4.8861 -12.6192 -0.7523 27 6 -3.6474 -13.1766 -1.0171 28 6 -2.5004 -12.5922 -0.5215 29 6 -2.5899 -11.4322 0.2503 30 6 -1.5683 -10.5935 0.9062 31 8 -0.3718 -10.8055 0.8762 32 1 -0.4850 0.8400 0.0004 33 1 2.9123 -3.7781 -0.0919 34 1 1.4184 -4.1252 -1.0163 35 1 -0.7843 -2.7568 -0.0829 36 1 -0.3770 -1.7008 1.3047 37 1 -0.2067 -6.2689 2.8153 38 1 -2.0935 -8.1700 3.1118 39 1 -0.5358 -8.9424 2.7308 40 1 -3.9681 -8.7640 0.8423 41 1 -4.1014 -9.7584 2.3206 42 1 -5.9509 -11.0359 0.2169 43 1 -5.7797 -13.0823 -1.1439 44 1 -3.5784 -14.0737 -1.6145 45 1 -1.5357 -13.0307 -0.7301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962331241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:27 Heat of formation + Delta-G solvation = 48.153865 kcal Electronic energy + Delta-G solvation = -28142.291068 eV Core-core repulsion = 24127.466832 eV Total energy + Delta-G solvation = -4014.824236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48836 -39.79471 -38.53357 -38.01204 -36.26725 -34.40175 -32.84016 -32.24084 -31.47283 -30.25543 -28.24966 -27.14559 -27.01375 -25.58409 -23.63588 -22.09647 -21.92015 -20.75318 -20.46649 -19.89083 -19.22070 -17.48229 -17.33931 -17.18662 -16.84485 -16.49344 -15.90166 -15.72217 -15.20682 -14.82078 -14.64855 -14.49928 -14.04649 -13.83708 -13.60777 -13.57345 -13.50849 -13.21335 -12.77547 -12.73617 -12.47622 -12.22482 -12.19470 -11.51767 -11.47106 -11.46025 -11.01426 -10.81235 -10.46247 -10.29430 -10.21483 -10.16731 -10.13709 -9.68447 -9.46619 -9.31456 -9.22400 -8.93929 -8.74873 -8.37336 -6.88094 -5.79046 -3.12002 0.42956 0.89459 2.23758 2.51357 2.54892 3.15046 3.39542 3.43758 3.44962 3.49494 3.71633 4.05843 4.28974 4.46535 4.47373 4.56753 4.59230 4.70698 4.83901 4.88525 4.98320 5.06757 5.08141 5.13415 5.31652 5.34068 5.37043 5.52840 5.54922 5.72041 5.78077 5.88450 5.89617 5.98570 6.09933 6.15170 6.19521 6.40794 6.52523 6.63863 6.69875 6.75987 6.89334 7.29025 7.47881 7.50690 7.69040 7.85811 8.14658 8.19102 9.06538 9.72998 10.49733 11.36059 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.001856 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.897872 B =15086.234878 C =15300.596899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.181 4.181 12 H 0.103 0.897 13 C -0.177 4.177 14 H 0.102 0.898 15 C 0.186 3.814 16 C 0.095 3.905 17 H 0.131 0.869 18 N -0.695 5.695 19 C 0.494 3.506 20 O -0.526 6.526 21 C 0.119 3.881 22 N -0.599 5.599 23 C 0.143 3.857 24 C -0.078 4.078 25 C -0.104 4.104 26 C -0.089 4.089 27 C -0.129 4.129 28 C -0.046 4.046 29 C -0.153 4.153 30 C 0.565 3.435 31 O -0.521 6.521 32 H 0.255 0.745 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -25.682 6.654 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.203 4.203 12 H 0.121 0.879 13 C -0.198 4.198 14 H 0.120 0.880 15 C 0.061 3.939 16 C -0.011 4.011 17 H 0.148 0.852 18 N -0.345 5.345 19 C 0.278 3.722 20 O -0.401 6.401 21 C -0.006 4.006 22 N -0.331 5.331 23 C 0.020 3.980 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.107 4.107 27 C -0.147 4.147 28 C -0.065 4.065 29 C -0.156 4.156 30 C 0.355 3.645 31 O -0.397 6.397 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.867 -25.457 5.815 28.683 hybrid contribution 0.586 0.985 0.530 1.262 sum -11.281 -24.472 6.345 27.684 Atomic orbital electron populations 1.69871 1.05036 1.25499 1.55999 1.24871 0.95655 0.97918 1.01987 0.86185 0.78523 0.82973 0.77988 1.21015 1.21568 1.21142 1.18972 0.90801 0.82433 1.43066 0.90570 1.46030 1.12395 0.99744 1.74109 1.21065 0.97159 0.85824 0.92846 1.24359 0.90500 1.02302 1.03117 0.87855 1.24577 1.02405 0.92400 1.00419 0.87993 1.21674 0.86463 0.92226 0.93556 1.21878 0.98749 0.84877 0.95603 0.85181 1.45346 1.58335 1.18051 1.12741 1.21070 0.78164 0.83459 0.89485 1.90736 1.52811 1.79534 1.17061 1.21172 0.99792 0.86732 0.92898 1.47292 1.07310 1.25645 1.52847 1.20508 0.80921 0.96821 0.99752 1.20448 0.94026 0.95939 0.97509 1.20310 0.97258 0.96102 0.98513 1.21334 0.98034 0.94912 0.96409 1.21144 0.92051 1.00729 1.00745 1.20890 0.99433 0.92651 0.93496 1.20363 0.94637 0.97965 1.02628 1.18236 0.87486 0.80719 0.78106 1.90791 1.14991 1.73224 1.60718 0.93529 0.92957 0.95642 0.95041 0.89000 0.76661 0.86638 0.86469 0.88130 0.88406 0.84997 0.84936 0.84955 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.84 55.49 0.60 -26.26 16 2 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 3 Si 0.91 22.00 29.56 -169.99 -5.03 16.97 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.29 10.36 -15.06 -0.16 -6.45 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 N -0.60 -15.46 3.45 -165.83 -0.57 -16.04 16 10 C 0.16 3.42 7.05 -2.41 -0.02 3.40 16 11 C -0.18 -3.27 7.05 -89.29 -0.63 -3.90 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 C -0.18 -3.27 6.96 -89.29 -0.62 -3.89 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 15 C 0.19 4.43 5.91 -0.37 0.00 4.42 16 16 C 0.09 1.59 5.97 -67.93 -0.41 1.19 16 17 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 18 N -0.70 -8.89 5.56 -53.80 -0.30 -9.19 16 19 C 0.49 6.71 7.90 -10.99 -0.09 6.63 16 20 O -0.53 -9.67 16.00 5.56 0.09 -9.58 16 21 C 0.12 1.10 6.54 -5.20 -0.03 1.07 16 22 N -0.60 -6.59 2.45 -177.51 -0.44 -7.02 16 23 C 0.14 1.14 7.38 -5.01 -0.04 1.10 16 24 C -0.08 -0.69 6.38 -104.27 -0.66 -1.35 16 25 C -0.10 -0.68 10.03 -39.74 -0.40 -1.08 16 26 C -0.09 -0.53 10.05 -39.44 -0.40 -0.92 16 27 C -0.13 -0.88 10.02 -39.64 -0.40 -1.27 16 28 C -0.05 -0.43 10.10 -39.17 -0.40 -0.83 16 29 C -0.15 -1.73 6.26 -105.05 -0.66 -2.38 16 30 C 0.57 7.83 7.97 -12.63 -0.10 7.73 16 31 O -0.52 -9.03 17.71 5.32 0.09 -8.93 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 2.42 6.58 -51.93 -0.34 2.07 16 37 H 0.40 3.70 8.83 -40.82 -0.36 3.34 16 38 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.99 8.00 -51.93 -0.42 0.57 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -37.49 382.59 -11.00 -48.49 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.12 Total: 2.62 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -5.10 Total: 3.17 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.71 Total: -58.50 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.49 -11.00 -48.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962331241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.642 kcal (2) G-P(sol) polarization free energy of solvation -37.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds