Wall clock time and date at job start Tue Mar 31 2020 23:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47333 * 240.00343 * 3 2 1 5 5 H 1.48497 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47430 * 120.00237 * 3 2 1 7 7 C 1.38811 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00360 * 170.66307 * 7 2 1 9 9 N 1.36943 * 120.00187 * 350.66611 * 7 2 1 10 10 C 1.48137 * 127.84012 * 164.90274 * 9 7 2 11 11 C 1.54388 * 104.62097 * 140.41153 * 10 9 7 12 12 H 1.08999 * 118.18558 * 244.20087 * 11 10 9 13 13 C 1.54143 * 104.96372 * 23.82620 * 11 10 9 14 14 H 1.09005 * 121.79232 * 222.19795 * 13 11 10 15 15 C 1.51697 * 127.60934 * 345.17168 * 9 7 2 16 16 C 1.53000 * 118.12248 * 87.18888 * 11 10 9 17 17 H 1.08998 * 117.44512 * 16.05969 * 16 11 10 18 18 N 1.46504 * 117.44308 * 160.81059 * 16 11 10 19 19 C 1.34772 * 119.99994 * 223.99775 * 18 16 11 20 20 O 1.21276 * 119.99915 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99802 * 179.97438 * 19 18 16 22 22 N 1.46497 * 109.47006 * 180.02562 * 21 19 18 23 23 C 1.46736 * 125.62724 * 270.00130 * 22 21 19 24 24 C 1.50819 * 106.25701 * 180.02562 * 23 22 21 25 25 C 1.37575 * 133.24316 * 179.97438 * 24 23 22 26 26 C 1.38470 * 119.95888 * 180.02562 * 25 24 23 27 27 C 1.38383 * 120.18619 * 359.97438 * 26 25 24 28 28 C 1.37936 * 120.32596 * 0.04204 * 27 26 25 29 29 C 1.39625 * 119.82437 * 359.95609 * 28 27 26 30 30 C 1.34417 * 125.62461 * 90.02536 * 22 21 19 31 31 O 1.21556 * 124.85839 * 0.24403 * 30 22 21 32 32 H 0.96996 * 120.00474 * 359.97438 * 1 2 3 33 33 H 1.09000 * 110.41285 * 21.62288 * 10 9 7 34 34 H 1.09009 * 110.40501 * 259.19332 * 10 9 7 35 35 H 1.08992 * 111.95998 * 100.90443 * 15 9 7 36 36 H 1.08997 * 110.48988 * 337.32810 * 15 9 7 37 37 H 0.96996 * 119.99521 * 44.00070 * 18 16 11 38 38 H 1.09005 * 109.47323 * 60.00214 * 21 19 18 39 39 H 1.09001 * 109.47336 * 300.00236 * 21 19 18 40 40 H 1.08999 * 110.09520 * 60.82073 * 23 22 21 41 41 H 1.09005 * 110.14775 * 299.24705 * 23 22 21 42 42 H 1.08005 * 120.02204 * 0.02562 * 25 24 23 43 43 H 1.07996 * 119.90784 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.84044 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.09222 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2083 -0.1523 9 7 1.3391 -2.3804 0.1913 10 6 1.8227 -3.7552 -0.0740 11 6 1.2861 -4.5918 1.1074 12 1 2.0077 -5.0451 1.7871 13 6 0.0628 -3.8100 1.6254 14 1 -0.1271 -3.6809 2.6910 15 6 -0.0707 -2.5674 0.7189 16 6 -0.1173 -5.1897 0.9890 17 1 -0.5639 -5.2302 -0.0045 18 7 -0.4534 -6.3047 1.8779 19 6 -1.1053 -7.3801 1.3932 20 8 -1.4132 -7.4250 0.2210 21 6 -1.4504 -8.5272 2.3075 22 7 -2.1505 -9.5648 1.5462 23 6 -3.6030 -9.6528 1.3570 24 6 -3.8451 -10.8778 0.5112 25 6 -4.9828 -11.4689 0.0123 26 6 -4.8861 -12.6192 -0.7523 27 6 -3.6474 -13.1766 -1.0171 28 6 -2.5004 -12.5922 -0.5215 29 6 -2.5899 -11.4322 0.2503 30 6 -1.5683 -10.5935 0.9062 31 8 -0.3718 -10.8055 0.8762 32 1 -0.4850 0.8400 0.0004 33 1 2.9123 -3.7781 -0.0919 34 1 1.4184 -4.1252 -1.0163 35 1 -0.7843 -2.7568 -0.0829 36 1 -0.3770 -1.7008 1.3047 37 1 -0.2067 -6.2689 2.8153 38 1 -2.0935 -8.1700 3.1118 39 1 -0.5358 -8.9424 2.7308 40 1 -3.9681 -8.7640 0.8423 41 1 -4.1014 -9.7584 2.3206 42 1 -5.9509 -11.0359 0.2169 43 1 -5.7797 -13.0823 -1.1439 44 1 -3.5784 -14.0737 -1.6145 45 1 -1.5357 -13.0307 -0.7301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962331241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:26 Heat of formation + Delta-G solvation = 22.470071 kcal Electronic energy + Delta-G solvation = -28143.404801 eV Core-core repulsion = 24127.466832 eV Total energy + Delta-G solvation = -4015.937969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26549 -41.03086 -39.77325 -39.03201 -37.14482 -36.00347 -34.41943 -33.13873 -32.08057 -31.99658 -29.13490 -28.91599 -27.72900 -27.44086 -24.52906 -23.40894 -22.66423 -22.01895 -21.84739 -20.88504 -20.80983 -18.88309 -18.48744 -18.12274 -18.04856 -17.47434 -16.84561 -16.66733 -16.59742 -16.16491 -15.63962 -15.49425 -15.15648 -15.10940 -14.80307 -14.64839 -14.59197 -14.41941 -14.05654 -13.77058 -13.41583 -13.36338 -13.31694 -13.06143 -12.92758 -12.76412 -12.69283 -12.19201 -12.07957 -12.03561 -11.87216 -11.66193 -11.39420 -11.09932 -10.87915 -10.74484 -10.20519 -9.91983 -9.75612 -9.67145 -8.95458 -7.92455 -5.28216 -0.23687 0.34071 1.38915 1.44514 1.46290 1.49620 1.56067 1.76952 2.11592 2.48035 2.81490 2.82469 3.09147 3.27637 3.38850 3.48502 3.64683 3.80370 3.89359 3.91659 4.09276 4.10281 4.17707 4.25023 4.34347 4.34465 4.43848 4.48842 4.51452 4.52527 4.76861 4.78257 4.86617 4.94432 4.98530 5.08532 5.24096 5.36711 5.37282 5.42024 5.43977 5.48298 5.51266 5.62438 5.79084 5.91603 6.10726 6.45407 6.93295 6.94183 7.16270 7.63256 8.43104 9.21956 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.001856 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.897872 B =15086.234878 C =15300.596899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.150 3.850 11 C -0.171 4.171 12 H 0.135 0.865 13 C -0.168 4.168 14 H 0.133 0.867 15 C 0.187 3.813 16 C 0.115 3.885 17 H 0.099 0.901 18 N -0.678 5.678 19 C 0.492 3.508 20 O -0.581 6.581 21 C 0.123 3.877 22 N -0.598 5.598 23 C 0.139 3.861 24 C -0.081 4.081 25 C -0.103 4.103 26 C -0.080 4.080 27 C -0.129 4.129 28 C -0.066 4.066 29 C -0.195 4.195 30 C 0.548 3.452 31 O -0.577 6.577 32 H 0.251 0.749 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.003 0.997 36 H 0.064 0.936 37 H 0.422 0.578 38 H 0.171 0.829 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.866 -27.071 8.624 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.348 5.348 10 C 0.024 3.976 11 C -0.192 4.192 12 H 0.153 0.847 13 C -0.189 4.189 14 H 0.150 0.850 15 C 0.062 3.938 16 C 0.008 3.992 17 H 0.117 0.883 18 N -0.329 5.329 19 C 0.278 3.722 20 O -0.459 6.459 21 C -0.002 4.002 22 N -0.329 5.329 23 C 0.018 3.982 24 C -0.083 4.083 25 C -0.121 4.121 26 C -0.097 4.097 27 C -0.147 4.147 28 C -0.085 4.085 29 C -0.198 4.198 30 C 0.339 3.661 31 O -0.458 6.458 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.021 0.979 36 H 0.082 0.918 37 H 0.260 0.740 38 H 0.189 0.811 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.186 0.814 44 H 0.175 0.825 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.428 -26.868 7.842 31.043 hybrid contribution 0.981 1.341 -0.199 1.673 sum -12.447 -25.527 7.643 29.411 Atomic orbital electron populations 1.70070 1.06484 1.25876 1.57179 1.25739 0.96557 1.01266 1.02166 0.85104 0.77174 0.78428 0.78299 1.20370 1.21862 1.20069 1.19365 0.91345 0.83656 1.42635 0.90180 1.46360 1.13032 1.00715 1.74645 1.21177 0.97766 0.84729 0.93907 1.24261 0.91229 1.01997 1.01730 0.84709 1.24264 1.03139 0.90734 1.00753 0.84952 1.21434 0.85361 0.93768 0.93219 1.21352 0.97511 0.85390 0.94972 0.88288 1.45117 1.57873 1.16606 1.13302 1.21954 0.76793 0.84073 0.89346 1.90726 1.54917 1.80592 1.19696 1.21453 1.01650 0.84568 0.92525 1.47533 1.08690 1.24817 1.51825 1.20793 0.79284 0.96355 1.01800 1.20709 0.93740 0.96118 0.97708 1.20749 0.97779 0.95985 0.97555 1.21830 0.98768 0.94237 0.94907 1.21473 0.91586 1.01318 1.00323 1.21060 1.00330 0.92863 0.94293 1.20442 0.95118 0.99377 1.04866 1.18858 0.87349 0.81752 0.78099 1.90729 1.17114 1.74946 1.63017 0.94034 0.92070 0.97057 0.97881 0.91795 0.73950 0.81131 0.85404 0.88296 0.84213 0.81818 0.81408 0.82497 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 10.84 21.65 0.23 -57.02 16 2 C -0.06 -3.65 5.41 84.86 0.46 -3.19 16 3 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.24 -13.76 10.36 84.03 0.87 -12.89 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 9 N -0.62 -32.95 3.45 -678.56 -2.34 -35.29 16 10 C 0.15 6.58 7.05 86.54 0.61 7.19 16 11 C -0.17 -5.95 7.05 -9.94 -0.07 -6.02 16 12 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 13 C -0.17 -6.06 6.96 -9.93 -0.07 -6.13 16 14 H 0.13 4.00 8.14 -2.38 -0.02 3.98 16 15 C 0.19 9.23 5.91 85.82 0.51 9.73 16 16 C 0.12 3.80 5.97 44.99 0.27 4.07 16 17 H 0.10 4.00 7.40 -2.39 -0.02 3.99 16 18 N -0.68 -15.84 5.56 -442.53 -2.46 -18.30 16 19 C 0.49 12.73 7.90 87.66 0.69 13.43 16 20 O -0.58 -21.67 16.00 -3.02 -0.05 -21.71 16 21 C 0.12 1.96 6.54 85.63 0.56 2.52 16 22 N -0.60 -12.51 2.45 -834.01 -2.05 -14.55 16 23 C 0.14 1.92 7.38 85.63 0.63 2.55 16 24 C -0.08 -1.31 6.38 -19.64 -0.13 -1.44 16 25 C -0.10 -1.03 10.03 22.17 0.22 -0.81 16 26 C -0.08 -0.68 10.05 22.36 0.22 -0.46 16 27 C -0.13 -1.56 10.02 22.23 0.22 -1.33 16 28 C -0.07 -1.29 10.10 22.53 0.23 -1.07 16 29 C -0.19 -4.50 6.26 -20.14 -0.13 -4.63 16 30 C 0.55 15.72 7.97 86.76 0.69 16.41 16 31 O -0.58 -21.28 17.71 -3.89 -0.07 -21.35 16 32 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.06 3.49 6.58 -2.39 -0.02 3.48 16 37 H 0.42 6.20 8.83 -92.71 -0.82 5.38 16 38 H 0.17 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.13 1.86 8.00 -2.39 -0.02 1.84 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -89.03 382.59 1.30 -87.73 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.21 Total: 14.77 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 5.80 Total: 17.94 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.61 Total: -125.17 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.12 Total: -43.06 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -89.03 1.30 -87.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962331241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.196 kcal (2) G-P(sol) polarization free energy of solvation -89.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds