Wall clock time and date at job start Wed Apr 1 2020 00:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00310 * 2 1 4 4 H 1.48508 * 109.47199 * 180.27535 * 3 2 1 5 5 H 1.48503 * 109.47256 * 300.27318 * 3 2 1 6 6 H 1.48494 * 109.47231 * 60.27193 * 3 2 1 7 7 C 1.38816 * 119.99465 * 180.27441 * 2 1 3 8 8 H 1.08001 * 119.99591 * 179.72674 * 7 2 1 9 9 N 1.36935 * 120.00424 * 359.72267 * 7 2 1 10 10 C 1.46498 * 120.00357 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49913 * 34.93207 * 10 9 7 12 12 C 1.53032 * 109.49988 * 155.00375 * 10 9 7 13 13 C 1.53041 * 109.53953 * 181.31574 * 12 10 9 14 14 C 1.53188 * 109.31153 * 298.63316 * 13 12 10 15 15 N 1.46922 * 108.77610 * 54.63517 * 14 13 12 16 16 C 1.34781 * 120.63441 * 126.41140 * 15 14 13 17 17 O 1.21569 * 120.00338 * 173.96777 * 16 15 14 18 18 C 1.47537 * 119.99572 * 353.96588 * 16 15 14 19 19 C 1.36620 * 126.82662 * 173.18085 * 18 16 15 20 20 C 1.42196 * 103.79066 * 179.97438 * 19 18 16 21 21 C 1.48443 * 126.84268 * 180.09914 * 20 19 18 22 22 C 1.39317 * 120.11942 * 359.97438 * 21 20 19 23 23 C 1.38021 * 119.88150 * 179.74204 * 22 21 20 24 24 C 1.38324 * 120.11933 * 0.52846 * 23 22 21 25 25 C 1.38324 * 120.23725 * 359.72116 * 24 23 22 26 26 C 1.38029 * 120.11689 * 0.02562 * 25 24 23 27 27 N 1.30939 * 106.31194 * 0.33681 * 20 19 18 28 28 O 1.20871 * 111.80382 * 359.78529 * 27 20 19 29 29 C 1.46930 * 118.74072 * 306.39083 * 15 14 13 30 30 H 0.97005 * 119.99597 * 359.72738 * 1 2 3 31 31 H 0.97006 * 119.99921 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46111 * 301.33514 * 12 10 9 33 33 H 1.08999 * 109.46640 * 61.30780 * 12 10 9 34 34 H 1.09002 * 109.49576 * 58.58429 * 13 12 10 35 35 H 1.09003 * 109.50030 * 178.68019 * 13 12 10 36 36 H 1.09000 * 109.58202 * 174.42199 * 14 13 12 37 37 H 1.08997 * 109.58995 * 294.69988 * 14 13 12 38 38 H 1.07992 * 128.10545 * 0.02562 * 19 18 16 39 39 H 1.08002 * 120.06221 * 359.97177 * 22 21 20 40 40 H 1.07997 * 119.94721 * 180.25342 * 23 22 21 41 41 H 1.07998 * 119.88193 * 179.74685 * 24 23 22 42 42 H 1.08004 * 119.94260 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.05532 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.58385 * 293.82514 * 29 15 14 45 45 H 1.09001 * 109.58958 * 173.39784 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0067 5 1 1.8866 2.3993 -1.2092 6 1 1.8966 2.3935 1.2157 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0102 9 7 1.3255 -2.3881 -0.0057 10 6 2.0579 -3.6569 -0.0112 11 1 2.9715 -3.5521 0.5739 12 6 1.1833 -4.7542 0.5993 13 6 1.9595 -6.0730 0.6241 14 6 2.3140 -6.4791 -0.8098 15 7 3.0307 -5.3690 -1.4523 16 6 4.2312 -5.5700 -2.0310 17 8 4.7638 -4.6720 -2.6537 18 6 4.8989 -6.8799 -1.9086 19 6 6.0437 -7.2777 -2.5394 20 6 6.2424 -8.6068 -2.0748 21 6 7.3521 -9.5217 -2.4426 22 6 8.3389 -9.1016 -3.3318 23 6 9.3714 -9.9544 -3.6661 24 6 9.4215 -11.2279 -3.1285 25 6 8.4415 -11.6519 -2.2492 26 6 7.4074 -10.8053 -1.9040 27 7 5.2487 -8.8648 -1.2621 28 8 4.4976 -7.9235 -1.1584 29 6 2.4136 -4.0356 -1.4524 30 1 -0.4850 0.8401 0.0040 31 1 0.3554 -2.3881 -0.0020 32 1 0.9084 -4.4756 1.6166 33 1 0.2811 -4.8754 -0.0003 34 1 2.8743 -5.9458 1.2029 35 1 1.3445 -6.8487 1.0804 36 1 2.9507 -7.3636 -0.7921 37 1 1.4012 -6.6971 -1.3642 38 1 6.6549 -6.7143 -3.2287 39 1 8.2982 -8.1092 -3.7558 40 1 10.1391 -9.6284 -4.3521 41 1 10.2289 -11.8934 -3.3960 42 1 8.4851 -12.6474 -1.8326 43 1 6.6426 -11.1375 -1.2177 44 1 1.5086 -4.0518 -2.0598 45 1 3.1160 -3.3079 -1.8588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999583257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:15 Heat of formation + Delta-G solvation = 77.919772 kcal Electronic energy + Delta-G solvation = -28576.956000 eV Core-core repulsion = 24563.422511 eV Total energy + Delta-G solvation = -4013.533490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.23123 -39.98753 -39.49897 -37.50713 -34.99907 -34.45230 -32.65764 -32.12844 -31.35268 -31.20469 -30.69642 -28.35003 -25.96094 -24.56906 -24.09869 -23.75181 -22.37090 -22.22281 -21.91024 -20.41069 -19.53205 -18.09848 -17.81886 -17.12560 -17.03487 -16.65010 -16.05732 -15.61462 -15.18163 -15.00355 -14.61710 -14.42350 -14.22778 -13.95498 -13.75630 -13.71518 -13.53401 -13.43141 -13.38674 -12.74517 -12.49856 -12.32283 -12.04938 -11.78275 -11.41435 -11.36461 -11.19940 -11.02668 -10.87758 -10.65696 -10.62178 -10.23794 -10.19508 -9.98396 -9.87314 -9.70463 -9.38907 -9.14777 -8.93708 -8.50399 -7.04809 -5.82248 -3.12287 0.39324 0.73082 0.96736 2.07196 2.38169 2.96202 3.06394 3.42566 3.45596 3.49178 3.51131 3.53923 4.02042 4.47611 4.52838 4.55544 4.61877 4.65613 4.71718 4.91912 4.98419 5.03788 5.09258 5.18113 5.26493 5.40553 5.43718 5.52355 5.58659 5.59439 5.72990 5.80402 5.84157 5.99426 6.01129 6.06221 6.08161 6.12220 6.15648 6.31042 6.39632 6.48925 6.59062 6.75396 6.92127 7.34309 7.68648 7.77037 8.03030 8.35618 9.47792 10.00914 10.36195 11.39821 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002170 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.756260 B =12899.507228 C =13854.899309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.168 3.832 11 H 0.053 0.947 12 C -0.127 4.127 13 C -0.128 4.128 14 C 0.093 3.907 15 N -0.589 5.589 16 C 0.594 3.406 17 O -0.512 6.512 18 C -0.066 4.066 19 C -0.148 4.148 20 C 0.054 3.946 21 C -0.021 4.021 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.091 4.091 27 N -0.344 5.344 28 O 0.121 5.879 29 C 0.092 3.908 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.184 0.816 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.619 -24.961 -4.858 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.357 5.357 10 C 0.056 3.944 11 H 0.071 0.929 12 C -0.166 4.166 13 C -0.167 4.167 14 C -0.030 4.030 15 N -0.321 5.321 16 C 0.378 3.622 17 O -0.388 6.388 18 C -0.131 4.131 19 C -0.170 4.170 20 C -0.102 4.102 21 C -0.022 4.022 22 C -0.113 4.113 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.139 4.139 26 C -0.110 4.110 27 N -0.046 5.046 28 O 0.050 5.950 29 C -0.032 4.032 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.202 0.798 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.616 -25.325 -4.441 29.094 hybrid contribution 0.415 1.426 -0.514 1.572 sum 14.031 -23.899 -4.955 28.153 Atomic orbital electron populations 1.69673 1.05126 1.25722 1.57300 1.24762 0.95535 0.97811 1.02540 0.86114 0.78958 0.83934 0.77188 1.20408 1.21760 1.21828 1.19316 0.91150 0.83923 1.43146 0.90929 1.42387 1.05861 0.99520 1.87896 1.20506 0.95189 0.86612 0.92072 0.92904 1.21850 0.98720 0.93987 1.02018 1.21863 1.01124 0.98264 0.95409 1.22236 0.97564 0.88965 0.94255 1.48257 1.17891 1.11977 1.53947 1.16726 0.81405 0.83532 0.80498 1.90878 1.65126 1.41267 1.41563 1.24387 0.98314 0.91848 0.98543 1.22859 0.97223 0.94346 1.02585 1.21919 0.96257 0.94042 0.97994 1.17683 0.92811 0.92679 0.99042 1.21186 0.93417 1.00218 0.96455 1.21109 0.98292 0.93976 1.00311 1.21316 0.98636 0.96207 0.96678 1.21131 0.94499 0.99888 0.98336 1.21242 0.98428 0.92483 0.98876 1.73957 1.03175 1.09691 1.17778 1.85065 1.40728 1.16755 1.52442 1.23016 0.98123 0.80357 1.01692 0.93466 0.77967 0.91169 0.91866 0.91416 0.90605 0.88650 0.90646 0.79823 0.85216 0.85294 0.85655 0.85462 0.85269 0.91312 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -17.28 5.12 -53.31 -0.27 -17.55 16 10 C 0.17 3.20 2.92 -67.81 -0.20 3.00 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.92 5.35 -26.69 -0.14 -2.07 16 13 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 14 C 0.09 1.10 6.34 -3.72 -0.02 1.07 16 15 N -0.59 -8.87 2.97 -174.00 -0.52 -9.39 16 16 C 0.59 9.35 7.68 -12.47 -0.10 9.26 16 17 O -0.51 -9.67 16.36 5.30 0.09 -9.58 16 18 C -0.07 -0.86 6.95 -36.38 -0.25 -1.12 16 19 C -0.15 -1.73 10.31 -38.65 -0.40 -2.12 16 20 C 0.05 0.62 7.05 -82.52 -0.58 0.04 16 21 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 22 C -0.09 -0.76 9.60 -39.26 -0.38 -1.14 16 23 C -0.12 -0.80 10.03 -39.63 -0.40 -1.20 16 24 C -0.11 -0.70 10.04 -39.52 -0.40 -1.09 16 25 C -0.12 -0.85 10.03 -39.63 -0.40 -1.25 16 26 C -0.09 -0.82 9.70 -39.26 -0.38 -1.20 16 27 N -0.34 -4.27 11.78 33.39 0.39 -3.88 16 28 O 0.12 1.49 7.78 15.56 0.12 1.61 16 29 C 0.09 1.66 6.00 -3.71 -0.02 1.64 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.39 9.81 7.80 -40.82 -0.32 9.49 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.04 3.86 -54.42 -0.21 0.83 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.18 1.79 7.57 -52.49 -0.40 1.39 16 39 H 0.13 0.87 7.22 -52.49 -0.38 0.49 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 43 H 0.13 1.13 7.89 -52.49 -0.41 0.72 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.96 7.04 -51.93 -0.37 1.59 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -31.82 375.98 -9.37 -41.19 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.86 Total: 7.30 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -4.69 Total: -5.88 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.33 Total: -57.65 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.21 Total: -7.97 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.82 -9.37 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999583257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.111 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds