Wall clock time and date at job start Wed Apr 1 2020 00:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00310 * 2 1 4 4 H 1.48508 * 109.47199 * 180.27535 * 3 2 1 5 5 H 1.48503 * 109.47256 * 300.27318 * 3 2 1 6 6 H 1.48494 * 109.47231 * 60.27193 * 3 2 1 7 7 C 1.38816 * 119.99465 * 180.27441 * 2 1 3 8 8 H 1.08001 * 119.99591 * 179.72674 * 7 2 1 9 9 N 1.36935 * 120.00424 * 359.72267 * 7 2 1 10 10 C 1.46498 * 120.00357 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49913 * 34.93207 * 10 9 7 12 12 C 1.53032 * 109.49988 * 155.00375 * 10 9 7 13 13 C 1.53041 * 109.53953 * 181.31574 * 12 10 9 14 14 C 1.53188 * 109.31153 * 298.63316 * 13 12 10 15 15 N 1.46922 * 108.77610 * 54.63517 * 14 13 12 16 16 C 1.34781 * 120.63441 * 126.41140 * 15 14 13 17 17 O 1.21569 * 120.00338 * 173.96777 * 16 15 14 18 18 C 1.47537 * 119.99572 * 353.96588 * 16 15 14 19 19 C 1.36620 * 126.82662 * 173.18085 * 18 16 15 20 20 C 1.42196 * 103.79066 * 179.97438 * 19 18 16 21 21 C 1.48443 * 126.84268 * 180.09914 * 20 19 18 22 22 C 1.39317 * 120.11942 * 359.97438 * 21 20 19 23 23 C 1.38021 * 119.88150 * 179.74204 * 22 21 20 24 24 C 1.38324 * 120.11933 * 0.52846 * 23 22 21 25 25 C 1.38324 * 120.23725 * 359.72116 * 24 23 22 26 26 C 1.38029 * 120.11689 * 0.02562 * 25 24 23 27 27 N 1.30939 * 106.31194 * 0.33681 * 20 19 18 28 28 O 1.20871 * 111.80382 * 359.78529 * 27 20 19 29 29 C 1.46930 * 118.74072 * 306.39083 * 15 14 13 30 30 H 0.97005 * 119.99597 * 359.72738 * 1 2 3 31 31 H 0.97006 * 119.99921 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46111 * 301.33514 * 12 10 9 33 33 H 1.08999 * 109.46640 * 61.30780 * 12 10 9 34 34 H 1.09002 * 109.49576 * 58.58429 * 13 12 10 35 35 H 1.09003 * 109.50030 * 178.68019 * 13 12 10 36 36 H 1.09000 * 109.58202 * 174.42199 * 14 13 12 37 37 H 1.08997 * 109.58995 * 294.69988 * 14 13 12 38 38 H 1.07992 * 128.10545 * 0.02562 * 19 18 16 39 39 H 1.08002 * 120.06221 * 359.97177 * 22 21 20 40 40 H 1.07997 * 119.94721 * 180.25342 * 23 22 21 41 41 H 1.07998 * 119.88193 * 179.74685 * 24 23 22 42 42 H 1.08004 * 119.94260 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.05532 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.58385 * 293.82514 * 29 15 14 45 45 H 1.09001 * 109.58958 * 173.39784 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0067 5 1 1.8866 2.3993 -1.2092 6 1 1.8966 2.3935 1.2157 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0102 9 7 1.3255 -2.3881 -0.0057 10 6 2.0579 -3.6569 -0.0112 11 1 2.9715 -3.5521 0.5739 12 6 1.1833 -4.7542 0.5993 13 6 1.9595 -6.0730 0.6241 14 6 2.3140 -6.4791 -0.8098 15 7 3.0307 -5.3690 -1.4523 16 6 4.2312 -5.5700 -2.0310 17 8 4.7638 -4.6720 -2.6537 18 6 4.8989 -6.8799 -1.9086 19 6 6.0437 -7.2777 -2.5394 20 6 6.2424 -8.6068 -2.0748 21 6 7.3521 -9.5217 -2.4426 22 6 8.3389 -9.1016 -3.3318 23 6 9.3714 -9.9544 -3.6661 24 6 9.4215 -11.2279 -3.1285 25 6 8.4415 -11.6519 -2.2492 26 6 7.4074 -10.8053 -1.9040 27 7 5.2487 -8.8648 -1.2621 28 8 4.4976 -7.9235 -1.1584 29 6 2.4136 -4.0356 -1.4524 30 1 -0.4850 0.8401 0.0040 31 1 0.3554 -2.3881 -0.0020 32 1 0.9084 -4.4756 1.6166 33 1 0.2811 -4.8754 -0.0003 34 1 2.8743 -5.9458 1.2029 35 1 1.3445 -6.8487 1.0804 36 1 2.9507 -7.3636 -0.7921 37 1 1.4012 -6.6971 -1.3642 38 1 6.6549 -6.7143 -3.2287 39 1 8.2982 -8.1092 -3.7558 40 1 10.1391 -9.6284 -4.3521 41 1 10.2289 -11.8934 -3.3960 42 1 8.4851 -12.6474 -1.8326 43 1 6.6426 -11.1375 -1.2177 44 1 1.5086 -4.0518 -2.0598 45 1 3.1160 -3.3079 -1.8588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999583257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:14 Heat of formation + Delta-G solvation = 59.415033 kcal Electronic energy + Delta-G solvation = -28577.758426 eV Core-core repulsion = 24563.422511 eV Total energy + Delta-G solvation = -4014.335915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.17804 -41.27218 -40.07250 -38.87368 -36.38510 -35.61541 -34.12931 -33.21470 -32.78941 -31.90144 -31.42473 -30.00639 -27.19946 -25.94241 -25.27822 -24.76904 -23.32101 -23.29120 -22.93431 -21.53393 -20.71943 -19.19622 -19.09153 -18.80000 -17.84446 -17.55982 -17.22093 -16.76341 -16.33452 -16.24164 -15.75658 -15.54262 -15.48746 -15.21963 -15.10950 -14.84839 -14.46045 -14.30569 -14.06636 -14.04481 -13.93896 -13.67540 -13.11499 -12.93190 -12.90951 -12.54225 -12.32799 -12.16152 -12.03968 -11.97007 -11.93056 -11.91801 -11.73792 -11.41006 -11.34407 -11.09531 -11.00309 -9.93893 -9.89810 -9.59126 -9.03743 -7.98107 -5.27242 -0.47143 -0.12604 0.42025 1.24934 1.29399 1.45733 1.46787 1.56480 1.77375 1.93723 2.53837 2.71367 2.87029 3.06365 3.35310 3.53376 3.71877 3.80124 3.98699 4.00898 4.01916 4.04199 4.04897 4.22551 4.28947 4.32355 4.38027 4.48440 4.58041 4.63938 4.68223 4.69393 4.83765 4.92438 4.94945 5.00936 5.07949 5.13048 5.32800 5.39981 5.44584 5.46198 5.48146 5.53269 5.54070 5.97047 6.11068 6.24344 6.66874 6.92829 7.31626 8.03096 8.28388 9.24531 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002170 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.756260 B =12899.507228 C =13854.899309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.727 5.727 10 C 0.166 3.834 11 H 0.036 0.964 12 C -0.119 4.119 13 C -0.119 4.119 14 C 0.090 3.910 15 N -0.588 5.588 16 C 0.596 3.404 17 O -0.552 6.552 18 C -0.078 4.078 19 C -0.138 4.138 20 C 0.058 3.942 21 C -0.050 4.050 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.105 4.105 27 N -0.353 5.353 28 O 0.123 5.877 29 C 0.107 3.893 30 H 0.252 0.748 31 H 0.378 0.622 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.200 0.800 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.124 0.876 44 H 0.070 0.930 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.308 -27.579 -5.165 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.367 5.367 10 C 0.056 3.944 11 H 0.054 0.946 12 C -0.157 4.157 13 C -0.157 4.157 14 C -0.031 4.031 15 N -0.319 5.319 16 C 0.381 3.619 17 O -0.431 6.431 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.097 4.097 21 C -0.051 4.051 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.124 4.124 27 N -0.056 5.056 28 O 0.052 5.948 29 C -0.018 4.018 30 H 0.061 0.939 31 H 0.211 0.789 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.217 0.783 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.142 0.858 44 H 0.088 0.912 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.322 -28.006 -4.733 32.273 hybrid contribution 0.022 2.055 -0.446 2.103 sum 15.344 -25.951 -5.179 30.590 Atomic orbital electron populations 1.69798 1.06309 1.26062 1.59113 1.25484 0.96384 1.00799 1.03456 0.85166 0.78123 0.80222 0.76819 1.19638 1.21939 1.21698 1.19568 0.91159 0.85331 1.41466 0.91370 1.42505 1.05594 1.00486 1.88113 1.20666 0.94963 0.86142 0.92634 0.94561 1.21754 0.98564 0.94070 1.01309 1.21845 1.01077 0.97226 0.95571 1.22507 0.98323 0.88071 0.94203 1.48229 1.17978 1.11591 1.54079 1.16935 0.81160 0.84055 0.79717 1.90851 1.66069 1.42874 1.43305 1.23881 0.98986 0.91325 1.00128 1.23136 0.96524 0.94447 1.01888 1.22216 0.96281 0.94102 0.97125 1.17841 0.93286 0.93102 1.00854 1.21413 0.93423 1.01085 0.96112 1.21464 0.98210 0.93924 1.00312 1.21722 0.98782 0.96415 0.95444 1.21429 0.93927 1.00555 0.98276 1.21342 0.99209 0.92637 0.99223 1.73931 1.03705 1.09563 1.18390 1.85030 1.40862 1.16450 1.52437 1.22471 0.97339 0.81494 1.00450 0.93879 0.78878 0.91666 0.91061 0.91802 0.86979 0.87231 0.88647 0.78274 0.84280 0.82865 0.82849 0.83334 0.85821 0.91197 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.19 13.06 21.65 0.28 -57.91 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.24 -13.60 9.93 84.03 0.83 -12.76 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -35.96 5.12 -322.58 -1.65 -37.62 16 10 C 0.17 6.43 2.92 45.07 0.13 6.57 16 11 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 12 C -0.12 -3.46 5.35 30.62 0.16 -3.30 16 13 C -0.12 -2.55 6.08 30.67 0.19 -2.36 16 14 C 0.09 1.96 6.34 86.36 0.55 2.51 16 15 N -0.59 -17.60 2.97 -822.67 -2.45 -20.05 16 16 C 0.60 18.90 7.68 86.70 0.67 19.57 16 17 O -0.55 -21.48 16.36 -3.93 -0.06 -21.55 16 18 C -0.08 -2.02 6.95 24.35 0.17 -1.85 16 19 C -0.14 -3.12 10.31 22.87 0.24 -2.88 16 20 C 0.06 1.30 7.05 42.98 0.30 1.60 16 21 C -0.05 -0.93 5.88 -20.04 -0.12 -1.05 16 22 C -0.10 -1.47 9.60 22.48 0.22 -1.26 16 23 C -0.12 -1.28 10.03 22.24 0.22 -1.06 16 24 C -0.11 -1.00 10.04 22.31 0.22 -0.77 16 25 C -0.12 -1.45 10.03 22.24 0.22 -1.23 16 26 C -0.10 -1.75 9.70 22.48 0.22 -1.53 16 27 N -0.35 -8.44 11.78 -48.91 -0.58 -9.01 16 28 O 0.12 2.89 7.78 65.85 0.51 3.40 16 29 C 0.11 3.97 6.00 86.36 0.52 4.49 16 30 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 31 H 0.38 19.71 7.80 -92.70 -0.72 18.98 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 2.16 3.86 -41.80 -0.16 2.00 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.20 3.71 7.57 -2.91 -0.02 3.69 16 39 H 0.14 1.64 7.22 -2.91 -0.02 1.61 16 40 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.12 2.09 7.89 -2.91 -0.02 2.07 16 44 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.06 2.64 7.04 -2.39 -0.02 2.62 16 Total: -1.00 -70.74 375.98 3.45 -67.29 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.15 Total: 25.41 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.21 Total: 1.21 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -4.39 Total: -124.59 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.45 Total: -18.15 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -70.74 3.45 -67.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999583257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.704 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds