Wall clock time and date at job start Tue Mar 31 2020 23:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47220 * 270.27734 * 3 2 1 5 5 H 1.48502 * 109.46944 * 30.27867 * 3 2 1 6 6 H 1.48499 * 109.46883 * 150.27790 * 3 2 1 7 7 C 1.38814 * 119.99689 * 180.28253 * 2 1 3 8 8 H 1.07998 * 119.99638 * 179.72226 * 7 2 1 9 9 N 1.36932 * 120.00461 * 359.71942 * 7 2 1 10 10 C 1.46496 * 120.00289 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49707 * 34.93772 * 10 9 7 12 12 C 1.53043 * 109.49523 * 155.00067 * 10 9 7 13 13 C 1.53046 * 109.53655 * 181.31723 * 12 10 9 14 14 C 1.53195 * 109.31102 * 298.63626 * 13 12 10 15 15 N 1.46922 * 108.77677 * 54.63567 * 14 13 12 16 16 C 1.34773 * 120.63453 * 126.41368 * 15 14 13 17 17 O 1.21587 * 120.00402 * 175.81318 * 16 15 14 18 18 C 1.47556 * 119.99554 * 355.81595 * 16 15 14 19 19 C 1.38917 * 120.29789 * 54.20421 * 18 16 15 20 20 C 1.40556 * 118.06542 * 179.97438 * 19 18 16 21 21 C 1.40540 * 121.13037 * 180.02562 * 20 19 18 22 22 C 1.36154 * 119.63992 * 179.97438 * 21 20 19 23 23 C 1.39324 * 120.83010 * 359.97438 * 22 21 20 24 24 C 1.36141 * 121.07998 * 0.02562 * 23 22 21 25 25 C 1.40535 * 119.82063 * 0.02562 * 24 23 22 26 26 N 1.33818 * 120.73330 * 180.02562 * 25 24 23 27 27 C 1.31383 * 121.65924 * 179.70172 * 26 25 24 28 28 O 1.35410 * 119.31823 * 180.23903 * 27 26 25 29 29 C 1.46934 * 118.73880 * 306.39063 * 15 14 13 30 30 H 0.97006 * 120.00060 * 359.72059 * 1 2 3 31 31 H 0.97003 * 119.99692 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46094 * 301.33405 * 12 10 9 33 33 H 1.08993 * 109.46396 * 61.31237 * 12 10 9 34 34 H 1.09001 * 109.49653 * 58.58209 * 13 12 10 35 35 H 1.08995 * 109.49918 * 178.68341 * 13 12 10 36 36 H 1.08999 * 109.58114 * 174.42396 * 14 13 12 37 37 H 1.09002 * 109.58270 * 294.70407 * 14 13 12 38 38 H 1.08001 * 120.96310 * 359.94778 * 19 18 16 39 39 H 1.08006 * 120.18561 * 359.95872 * 21 20 19 40 40 H 1.07997 * 119.58411 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.45877 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.09017 * 179.97438 * 24 23 22 43 43 H 0.96700 * 114.00208 * 270.25933 * 28 27 26 44 44 H 1.08998 * 109.58191 * 293.82787 * 29 15 14 45 45 H 1.08998 * 109.58422 * 173.39870 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4000 5 1 1.4506 2.6509 0.7059 6 1 3.5506 1.4384 0.6942 7 6 2.0101 -1.2022 -0.0059 8 1 3.0901 -1.2022 -0.0105 9 7 1.3255 -2.3881 -0.0060 10 6 2.0580 -3.6568 -0.0117 11 1 2.9716 -3.5520 0.5735 12 6 1.1833 -4.7542 0.5989 13 6 1.9596 -6.0730 0.6235 14 6 2.3141 -6.4790 -0.8105 15 7 3.0308 -5.3688 -1.4528 16 6 4.2312 -5.5697 -2.0316 17 8 4.7793 -4.6616 -2.6259 18 6 4.8803 -6.8920 -1.9441 19 6 4.2030 -8.0336 -2.3535 20 6 4.8661 -9.2687 -2.2501 21 6 4.2418 -10.4639 -2.6462 22 6 4.9125 -11.6434 -2.5333 23 6 6.2112 -11.6810 -2.0303 24 6 6.8459 -10.5425 -1.6373 25 6 6.1871 -9.3051 -1.7370 26 7 6.7939 -8.1747 -1.3566 27 6 6.1974 -7.0076 -1.4472 28 8 6.8576 -5.8931 -1.0530 29 6 2.4136 -4.0354 -1.4528 30 1 -0.4850 0.8401 0.0041 31 1 0.3555 -2.3881 -0.0022 32 1 0.9085 -4.4756 1.6163 33 1 0.2812 -4.8753 -0.0007 34 1 2.8745 -5.9458 1.2023 35 1 1.3447 -6.8487 1.0798 36 1 2.9509 -7.3635 -0.7929 37 1 1.4012 -6.6968 -1.3648 38 1 3.1962 -7.9740 -2.7396 39 1 3.2354 -10.4470 -3.0378 40 1 4.4318 -12.5613 -2.8376 41 1 6.7225 -12.6289 -1.9500 42 1 7.8527 -10.5902 -1.2493 43 1 6.7330 -5.6714 -0.1200 44 1 1.5086 -4.0517 -2.0602 45 1 3.1159 -3.3077 -1.8591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999843501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:51 Heat of formation + Delta-G solvation = 3.121827 kcal Electronic energy + Delta-G solvation = -29418.342154 eV Core-core repulsion = 25401.565182 eV Total energy + Delta-G solvation = -4016.776972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47350 -39.84647 -38.50781 -37.21289 -36.13067 -34.67594 -33.83690 -32.32898 -31.28870 -30.68636 -30.09882 -28.25787 -25.92187 -24.43177 -24.15964 -23.72271 -22.55837 -21.93556 -20.77481 -19.50252 -19.23730 -18.37718 -17.50016 -17.12132 -16.61143 -16.45213 -15.85327 -15.21101 -15.13608 -14.79634 -14.51345 -14.46488 -14.22781 -14.06082 -13.92283 -13.67380 -13.43233 -13.37781 -12.74473 -12.51777 -12.37324 -12.32726 -12.04898 -11.76422 -11.71759 -11.45053 -11.20889 -10.87944 -10.86313 -10.66570 -10.58889 -10.23578 -10.17995 -9.88265 -9.75586 -9.55057 -9.11403 -9.00399 -8.63093 -8.42426 -7.03823 -5.81405 -3.11500 -0.11981 0.26779 1.50380 2.26782 2.73448 3.07763 3.27466 3.44266 3.49898 3.51163 3.64548 4.07829 4.16896 4.28510 4.41458 4.55615 4.60420 4.71042 4.81503 4.82701 4.96259 4.99696 5.16721 5.29639 5.34458 5.41858 5.43522 5.47586 5.55518 5.58512 5.73458 5.85374 5.89046 5.95290 5.96759 6.01174 6.09813 6.14706 6.27823 6.35845 6.42450 6.64325 6.76452 6.93803 7.23724 7.49604 7.55543 7.69382 8.24183 8.36692 9.48648 10.01752 10.36864 11.40715 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.002638 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.092836 B =10612.493357 C =11366.497941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.098 3.902 15 N -0.598 5.598 16 C 0.557 3.443 17 O -0.514 6.514 18 C -0.182 4.182 19 C -0.011 4.011 20 C -0.118 4.118 21 C -0.084 4.084 22 C -0.123 4.123 23 C -0.090 4.090 24 C -0.100 4.100 25 C 0.163 3.837 26 N -0.497 5.497 27 C 0.387 3.613 28 O -0.466 6.466 29 C 0.093 3.907 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.406 0.594 44 H 0.064 0.936 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 -27.663 -1.707 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.332 5.332 16 C 0.343 3.657 17 O -0.389 6.389 18 C -0.189 4.189 19 C -0.037 4.037 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.119 4.119 25 C 0.041 3.959 26 N -0.216 5.216 27 C 0.193 3.807 28 O -0.273 6.273 29 C -0.031 4.031 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.163 -27.006 -2.243 28.302 hybrid contribution -0.829 1.032 0.090 1.327 sum 7.334 -25.974 -2.152 27.075 Atomic orbital electron populations 1.69659 1.05135 1.25818 1.57352 1.24750 0.95521 0.97791 1.02548 0.86186 0.78711 0.83638 0.77669 1.21552 1.21757 1.20642 1.19262 0.91109 0.83934 1.43185 0.91010 1.42372 1.05816 0.99552 1.88045 1.20482 0.94974 0.86499 0.92265 0.93109 1.21835 0.98714 0.93991 1.01937 1.21877 1.00941 0.98353 0.95610 1.21960 0.96928 0.89356 0.94237 1.48245 1.18504 1.11337 1.55140 1.17872 0.81136 0.86754 0.79974 1.90856 1.63462 1.43222 1.41350 1.21134 0.95463 0.95497 1.06829 1.21919 0.99297 0.89830 0.92668 1.18757 0.95574 0.94478 1.03232 1.21037 0.99948 0.91139 0.98107 1.20942 0.95003 0.98267 0.99899 1.20979 0.94850 0.98416 0.96786 1.20835 1.00626 0.89931 1.00466 1.18649 0.90321 0.91743 0.95223 1.67525 1.36706 0.97618 1.19787 1.19107 0.85063 0.85206 0.91337 1.84782 1.71814 1.38331 1.32355 1.22879 0.97903 0.81063 1.01270 0.93435 0.78037 0.91301 0.91945 0.91685 0.90928 0.90297 0.91045 0.83098 0.84812 0.85224 0.85040 0.84437 0.73457 0.91796 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -17.39 5.12 -53.31 -0.27 -17.66 16 10 C 0.17 3.22 2.92 -67.81 -0.20 3.02 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.13 -1.87 5.35 -26.69 -0.14 -2.01 16 13 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 14 C 0.10 1.05 5.55 -3.71 -0.02 1.03 16 15 N -0.60 -8.81 2.97 -173.99 -0.52 -9.33 16 16 C 0.56 8.99 6.85 -12.46 -0.09 8.91 16 17 O -0.51 -10.65 16.17 1.34 0.02 -10.63 16 18 C -0.18 -2.41 4.91 -104.71 -0.51 -2.92 16 19 C -0.01 -0.11 7.29 -38.46 -0.28 -0.39 16 20 C -0.12 -1.14 5.74 -106.81 -0.61 -1.75 16 21 C -0.08 -0.57 9.77 -39.46 -0.39 -0.95 16 22 C -0.12 -0.70 9.96 -39.93 -0.40 -1.10 16 23 C -0.09 -0.56 9.94 -39.93 -0.40 -0.95 16 24 C -0.10 -0.85 9.97 -39.47 -0.39 -1.25 16 25 C 0.16 1.81 6.61 -84.79 -0.56 1.25 16 26 N -0.50 -6.59 10.33 -10.76 -0.11 -6.70 16 27 C 0.39 5.35 7.73 -16.60 -0.13 5.22 16 28 O -0.47 -6.51 12.72 -21.87 -0.28 -6.79 16 29 C 0.09 1.70 6.01 -3.71 -0.02 1.68 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.39 9.84 7.80 -40.82 -0.32 9.52 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.71 4.73 -51.93 -0.25 0.46 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.15 1.15 7.40 -52.49 -0.39 0.76 16 39 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.41 3.75 9.06 45.56 0.41 4.17 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 2.00 7.03 -51.93 -0.36 1.64 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -35.41 372.66 -9.49 -44.89 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.10 Total: 9.10 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -4.55 Total: 0.95 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.18 Total: -60.69 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.26 Total: -17.42 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.41 -9.49 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999843501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.016 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds