Wall clock time and date at job start Tue Mar 31 2020 23:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47220 * 270.27734 * 3 2 1 5 5 H 1.48502 * 109.46944 * 30.27867 * 3 2 1 6 6 H 1.48499 * 109.46883 * 150.27790 * 3 2 1 7 7 C 1.38814 * 119.99689 * 180.28253 * 2 1 3 8 8 H 1.07998 * 119.99638 * 179.72226 * 7 2 1 9 9 N 1.36932 * 120.00461 * 359.71942 * 7 2 1 10 10 C 1.46496 * 120.00289 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49707 * 34.93772 * 10 9 7 12 12 C 1.53043 * 109.49523 * 155.00067 * 10 9 7 13 13 C 1.53046 * 109.53655 * 181.31723 * 12 10 9 14 14 C 1.53195 * 109.31102 * 298.63626 * 13 12 10 15 15 N 1.46922 * 108.77677 * 54.63567 * 14 13 12 16 16 C 1.34773 * 120.63453 * 126.41368 * 15 14 13 17 17 O 1.21587 * 120.00402 * 175.81318 * 16 15 14 18 18 C 1.47556 * 119.99554 * 355.81595 * 16 15 14 19 19 C 1.38917 * 120.29789 * 54.20421 * 18 16 15 20 20 C 1.40556 * 118.06542 * 179.97438 * 19 18 16 21 21 C 1.40540 * 121.13037 * 180.02562 * 20 19 18 22 22 C 1.36154 * 119.63992 * 179.97438 * 21 20 19 23 23 C 1.39324 * 120.83010 * 359.97438 * 22 21 20 24 24 C 1.36141 * 121.07998 * 0.02562 * 23 22 21 25 25 C 1.40535 * 119.82063 * 0.02562 * 24 23 22 26 26 N 1.33818 * 120.73330 * 180.02562 * 25 24 23 27 27 C 1.31383 * 121.65924 * 179.70172 * 26 25 24 28 28 O 1.35410 * 119.31823 * 180.23903 * 27 26 25 29 29 C 1.46934 * 118.73880 * 306.39063 * 15 14 13 30 30 H 0.97006 * 120.00060 * 359.72059 * 1 2 3 31 31 H 0.97003 * 119.99692 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46094 * 301.33405 * 12 10 9 33 33 H 1.08993 * 109.46396 * 61.31237 * 12 10 9 34 34 H 1.09001 * 109.49653 * 58.58209 * 13 12 10 35 35 H 1.08995 * 109.49918 * 178.68341 * 13 12 10 36 36 H 1.08999 * 109.58114 * 174.42396 * 14 13 12 37 37 H 1.09002 * 109.58270 * 294.70407 * 14 13 12 38 38 H 1.08001 * 120.96310 * 359.94778 * 19 18 16 39 39 H 1.08006 * 120.18561 * 359.95872 * 21 20 19 40 40 H 1.07997 * 119.58411 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.45877 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.09017 * 179.97438 * 24 23 22 43 43 H 0.96700 * 114.00208 * 270.25933 * 28 27 26 44 44 H 1.08998 * 109.58191 * 293.82787 * 29 15 14 45 45 H 1.08998 * 109.58422 * 173.39870 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4000 5 1 1.4506 2.6509 0.7059 6 1 3.5506 1.4384 0.6942 7 6 2.0101 -1.2022 -0.0059 8 1 3.0901 -1.2022 -0.0105 9 7 1.3255 -2.3881 -0.0060 10 6 2.0580 -3.6568 -0.0117 11 1 2.9716 -3.5520 0.5735 12 6 1.1833 -4.7542 0.5989 13 6 1.9596 -6.0730 0.6235 14 6 2.3141 -6.4790 -0.8105 15 7 3.0308 -5.3688 -1.4528 16 6 4.2312 -5.5697 -2.0316 17 8 4.7793 -4.6616 -2.6259 18 6 4.8803 -6.8920 -1.9441 19 6 4.2030 -8.0336 -2.3535 20 6 4.8661 -9.2687 -2.2501 21 6 4.2418 -10.4639 -2.6462 22 6 4.9125 -11.6434 -2.5333 23 6 6.2112 -11.6810 -2.0303 24 6 6.8459 -10.5425 -1.6373 25 6 6.1871 -9.3051 -1.7370 26 7 6.7939 -8.1747 -1.3566 27 6 6.1974 -7.0076 -1.4472 28 8 6.8576 -5.8931 -1.0530 29 6 2.4136 -4.0354 -1.4528 30 1 -0.4850 0.8401 0.0041 31 1 0.3555 -2.3881 -0.0022 32 1 0.9085 -4.4756 1.6163 33 1 0.2812 -4.8753 -0.0007 34 1 2.8745 -5.9458 1.2023 35 1 1.3447 -6.8487 1.0798 36 1 2.9509 -7.3635 -0.7929 37 1 1.4012 -6.6968 -1.3648 38 1 3.1962 -7.9740 -2.7396 39 1 3.2354 -10.4470 -3.0378 40 1 4.4318 -12.5613 -2.8376 41 1 6.7225 -12.6289 -1.9500 42 1 7.8527 -10.5902 -1.2493 43 1 6.7330 -5.6714 -0.1200 44 1 1.5086 -4.0517 -2.0602 45 1 3.1159 -3.3077 -1.8591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999843501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:50 Heat of formation + Delta-G solvation = -24.351275 kcal Electronic energy + Delta-G solvation = -29419.533477 eV Core-core repulsion = 25401.565182 eV Total energy + Delta-G solvation = -4017.968295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33962 -40.94811 -39.41358 -38.55758 -36.94599 -36.25754 -34.83903 -33.78557 -32.77622 -31.59349 -30.76398 -29.86811 -27.01380 -25.93335 -25.30567 -24.68125 -23.39457 -23.09060 -22.02452 -20.61617 -20.23641 -19.23062 -19.14766 -18.46766 -17.64784 -17.38206 -16.81670 -16.70102 -16.11769 -15.94078 -15.59989 -15.47152 -15.43192 -15.22763 -15.04274 -14.88633 -14.64241 -14.32774 -14.04573 -13.90367 -13.69488 -13.12863 -13.12271 -12.92754 -12.64142 -12.52989 -12.44788 -12.42265 -12.24077 -12.13312 -11.92922 -11.76992 -11.58122 -11.36994 -11.20288 -11.09308 -10.56684 -9.87719 -9.70956 -9.26191 -9.03573 -7.99991 -5.28807 -0.82565 -0.50117 0.84516 1.37118 1.43428 1.45488 1.53074 1.68561 1.96672 2.44038 2.52325 2.94961 3.20040 3.33486 3.48438 3.50070 3.72259 3.77417 3.87731 4.01647 4.03108 4.17207 4.18925 4.29712 4.30927 4.35294 4.36686 4.55447 4.60051 4.63817 4.70932 4.84330 4.86876 4.88030 5.01749 5.05778 5.11824 5.30062 5.36531 5.38367 5.41947 5.43231 5.49604 5.53935 5.85308 6.22963 6.29347 6.41708 6.71640 7.01366 7.30015 8.01969 8.27113 9.22501 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.002638 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.092836 B =10612.493357 C =11366.497941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.965 3.035 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.031 0.969 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.094 3.906 15 N -0.593 5.593 16 C 0.560 3.440 17 O -0.574 6.574 18 C -0.207 4.207 19 C 0.012 3.988 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.116 4.116 23 C -0.070 4.070 24 C -0.126 4.126 25 C 0.139 3.861 26 N -0.519 5.519 27 C 0.366 3.634 28 O -0.490 6.490 29 C 0.108 3.892 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.182 0.818 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.417 0.583 44 H 0.065 0.935 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -32.430 -1.968 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.794 3.206 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.376 4.376 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.027 4.027 15 N -0.325 5.325 16 C 0.348 3.652 17 O -0.454 6.454 18 C -0.214 4.214 19 C -0.014 4.014 20 C -0.129 4.129 21 C -0.099 4.099 22 C -0.133 4.133 23 C -0.090 4.090 24 C -0.145 4.145 25 C 0.018 3.982 26 N -0.239 5.239 27 C 0.173 3.827 28 O -0.300 6.300 29 C -0.017 4.017 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.199 0.801 39 H 0.184 0.816 40 H 0.184 0.816 41 H 0.181 0.819 42 H 0.156 0.844 43 H 0.278 0.722 44 H 0.084 0.916 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.131 -31.851 -2.475 32.733 hybrid contribution -0.450 2.203 0.149 2.253 sum 6.681 -29.648 -2.325 30.480 Atomic orbital electron populations 1.69778 1.06228 1.26157 1.59060 1.25450 0.96382 1.00690 1.03419 0.85267 0.77814 0.80092 0.77382 1.21708 1.21501 1.19926 1.19495 0.91015 0.85480 1.41628 0.91750 1.42495 1.05565 1.00537 1.88212 1.20647 0.94744 0.86126 0.92672 0.95049 1.21738 0.98556 0.94194 1.01080 1.21868 1.00802 0.97086 0.96161 1.22332 0.98049 0.88439 0.93867 1.48210 1.18409 1.10916 1.54950 1.18314 0.80809 0.87367 0.78713 1.90813 1.64920 1.45564 1.44089 1.20760 0.95596 0.94620 1.10415 1.22239 1.00044 0.88834 0.90290 1.18964 0.95073 0.95441 1.03458 1.21433 1.01300 0.90054 0.97111 1.21440 0.94502 0.99367 0.98024 1.21439 0.95036 0.98683 0.93829 1.21009 1.01231 0.89961 1.02278 1.19149 0.91553 0.91774 0.95727 1.67498 1.37444 0.98090 1.20831 1.19216 0.85594 0.85271 0.92639 1.84734 1.72372 1.39200 1.33647 1.22305 0.96824 0.82458 1.00116 0.93812 0.78889 0.91957 0.91020 0.92257 0.86911 0.87807 0.88248 0.80107 0.81567 0.81574 0.81865 0.84421 0.72174 0.91647 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.62 13.06 21.65 0.28 -58.33 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.24 -13.93 9.93 84.03 0.83 -13.09 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -36.52 5.12 -322.58 -1.65 -38.18 16 10 C 0.17 6.58 2.92 45.07 0.13 6.71 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.12 -3.33 5.35 30.62 0.16 -3.17 16 13 C -0.12 -2.33 6.08 30.67 0.19 -2.15 16 14 C 0.09 1.73 5.55 86.36 0.48 2.21 16 15 N -0.59 -17.39 2.97 -822.64 -2.44 -19.83 16 16 C 0.56 18.72 6.85 86.70 0.59 19.32 16 17 O -0.57 -25.60 16.17 -0.21 0.00 -25.61 16 18 C -0.21 -5.47 4.91 -19.92 -0.10 -5.57 16 19 C 0.01 0.20 7.29 23.00 0.17 0.37 16 20 C -0.13 -2.07 5.74 -21.28 -0.12 -2.19 16 21 C -0.08 -0.67 9.77 22.35 0.22 -0.45 16 22 C -0.12 -0.66 9.96 22.05 0.22 -0.44 16 23 C -0.07 -0.55 9.94 22.04 0.22 -0.33 16 24 C -0.13 -1.89 9.97 22.34 0.22 -1.67 16 25 C 0.14 2.93 6.61 40.27 0.27 3.20 16 26 N -0.52 -14.09 10.33 -301.41 -3.11 -17.20 16 27 C 0.37 10.62 7.73 85.50 0.66 11.29 16 28 O -0.49 -15.04 12.72 -83.27 -1.06 -16.10 16 29 C 0.11 4.11 6.01 86.36 0.52 4.63 16 30 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.38 19.86 7.80 -92.71 -0.72 19.13 16 32 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.47 4.73 -2.39 -0.01 1.46 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.18 1.96 7.40 -2.91 -0.02 1.94 16 39 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.17 -0.16 8.06 -2.91 -0.02 -0.18 16 41 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.42 8.97 9.06 -74.06 -0.67 8.30 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.05 2.26 7.03 -2.39 -0.02 2.24 16 Total: -1.00 -83.78 372.66 -1.18 -84.96 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.35 Total: 25.40 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 5.13 Total: 15.25 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -6.93 Total: -133.54 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.06 Total: -41.71 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -83.78 -1.18 -84.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999843501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.611 kcal (2) G-P(sol) polarization free energy of solvation -83.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds