Wall clock time and date at job start Wed Apr 1 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21701 * 120.00388 * 0.02562 * 14 13 12 16 16 C 1.46577 * 119.99611 * 179.97438 * 14 13 12 17 17 C 1.36569 * 126.55836 * 179.71715 * 16 14 13 18 18 N 1.33315 * 107.64957 * 179.83591 * 17 16 14 19 19 C 1.31640 * 108.95895 * 0.43616 * 18 17 16 20 20 C 1.47697 * 125.54097 * 179.74803 * 19 18 17 21 21 C 1.39643 * 120.14972 * 179.69485 * 20 19 18 22 22 C 1.37936 * 119.84706 * 179.74750 * 21 20 19 23 23 C 1.38372 * 120.15350 * 0.53358 * 22 21 20 24 24 C 1.38372 * 120.30209 * 359.74123 * 23 22 21 25 25 C 1.37946 * 120.14974 * 359.97438 * 24 23 22 26 26 O 1.34206 * 108.91398 * 359.72477 * 19 18 17 27 27 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 28 28 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 29 29 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 31 31 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 32 32 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 33 33 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 34 34 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 35 35 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 36 36 H 1.07996 * 126.17401 * 359.95698 * 17 16 14 37 37 H 1.07999 * 120.07475 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.92662 * 180.27712 * 22 21 20 39 39 H 1.07994 * 119.85041 * 179.76658 * 23 22 21 40 40 H 1.07998 * 119.92267 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.07094 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.49848 * 178.74812 * 27 12 11 43 43 H 1.08999 * 109.49849 * 58.64620 * 27 12 11 44 44 H 1.09004 * 109.59094 * 246.19900 * 28 9 7 45 45 H 1.09001 * 109.59077 * 6.49172 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5965 -0.9816 -3.4483 16 6 7.8430 -2.7752 -4.9097 17 6 8.8856 -2.3149 -5.6622 18 7 9.1708 -3.2476 -6.5711 19 6 8.3435 -4.2602 -6.4189 20 6 8.3319 -5.4898 -7.2371 21 6 7.4047 -6.4998 -6.9721 22 6 7.3960 -7.6433 -7.7435 23 6 8.3104 -7.7957 -8.7708 24 6 9.2356 -6.8013 -9.0352 25 6 9.2516 -5.6501 -8.2754 26 8 7.5128 -3.9938 -5.3991 27 6 4.8755 -2.9898 -1.0921 28 6 4.2351 -2.2628 0.0946 29 1 -0.4850 0.8401 0.0004 30 1 2.9908 0.3501 -1.7559 31 1 4.5579 0.3822 -0.9097 32 1 3.7035 -1.5726 -3.0945 33 1 4.9277 -0.2876 -3.2372 34 1 6.2781 -1.3980 -1.4672 35 1 5.8557 -3.5342 -3.4126 36 1 9.3895 -1.3674 -5.5414 37 1 6.6937 -6.3843 -6.1674 38 1 6.6766 -8.4233 -7.5425 39 1 8.3016 -8.6946 -9.3693 40 1 9.9461 -6.9265 -9.8388 41 1 9.9740 -4.8746 -8.4832 42 1 5.6320 -3.6849 -0.7278 43 1 4.1091 -3.5392 -1.6388 44 1 5.0116 -1.7874 0.6940 45 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003088331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:26 Heat of formation + Delta-G solvation = 41.625902 kcal Electronic energy + Delta-G solvation = -28379.036305 eV Core-core repulsion = 24363.928995 eV Total energy + Delta-G solvation = -4015.107310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.69631 -39.90854 -39.47601 -37.70622 -35.43636 -34.64214 -32.88471 -32.24230 -31.50158 -30.55045 -30.44086 -29.32876 -25.59869 -24.51167 -23.77752 -22.93040 -22.70318 -21.84065 -21.66491 -20.68058 -19.88959 -18.60565 -17.74454 -17.21989 -16.87537 -16.49630 -16.28589 -15.68913 -15.22158 -14.97625 -14.82611 -14.24568 -14.22283 -14.14154 -13.97951 -13.84733 -13.71070 -13.43014 -13.21108 -12.97774 -12.40425 -12.02900 -12.00725 -11.87748 -11.85629 -11.68252 -11.22051 -11.14415 -10.89366 -10.66949 -10.46273 -10.22521 -10.19729 -10.08161 -9.86507 -9.53472 -9.51933 -9.04686 -8.69779 -8.63107 -7.03152 -5.97289 -3.33880 -0.04148 0.85040 1.00693 1.94360 2.20742 2.92602 2.98665 3.29946 3.33166 3.46580 3.49277 3.52375 4.30922 4.40596 4.51806 4.53517 4.57996 4.61250 4.84558 4.90684 4.93695 5.00427 5.10273 5.21378 5.22764 5.33898 5.36050 5.48995 5.56936 5.71858 5.75219 5.86235 5.92449 5.93946 5.95917 5.97835 6.08023 6.22088 6.33226 6.33781 6.50824 6.53970 6.61554 6.62643 6.85142 7.10934 7.37765 7.92147 7.93409 8.29794 8.90337 9.69186 10.05954 11.18376 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.002170 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.326613 B =12898.761376 C =13631.858324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.128 3.872 11 C -0.142 4.142 12 C 0.149 3.851 13 N -0.709 5.709 14 C 0.605 3.395 15 O -0.513 6.513 16 C -0.101 4.101 17 C 0.055 3.945 18 N -0.477 5.477 19 C 0.257 3.743 20 C -0.027 4.027 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.123 4.123 25 C -0.066 4.066 26 O -0.182 6.182 27 C -0.141 4.141 28 C 0.152 3.848 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.201 0.799 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.026 0.974 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.054 -15.939 -17.090 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.002 3.998 11 C -0.182 4.182 12 C 0.046 3.954 13 N -0.358 5.358 14 C 0.389 3.611 15 O -0.390 6.390 16 C -0.157 4.157 17 C -0.089 4.089 18 N -0.205 5.205 19 C 0.055 3.945 20 C -0.029 4.029 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.115 4.115 24 C -0.141 4.141 25 C -0.085 4.085 26 O -0.068 6.068 27 C -0.181 4.181 28 C 0.025 3.975 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.236 0.764 36 H 0.218 0.782 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.560 -15.066 -17.201 30.090 hybrid contribution -0.292 0.633 0.309 0.763 sum 19.268 -14.432 -16.892 29.409 Atomic orbital electron populations 1.69836 1.05727 1.26614 1.52814 1.25284 0.95242 0.97645 0.99365 0.86975 0.80083 0.84622 0.77129 1.21562 1.23073 1.19457 1.18902 0.84881 0.94781 1.40429 0.89616 1.44403 1.08679 1.33346 1.46554 1.21323 0.97325 0.92027 0.89096 1.22425 0.97538 0.98647 0.99633 1.21153 0.94628 0.93858 0.85725 1.46232 1.33071 1.22183 1.34290 1.16329 0.80080 0.84634 0.80059 1.90921 1.64311 1.18635 1.65173 1.23465 1.03443 0.85926 1.02864 1.23612 0.94819 0.99843 0.90669 1.70602 1.24665 1.01045 1.24178 1.24042 0.86875 0.95803 0.87776 1.17331 1.00015 0.89175 0.96344 1.21336 0.97065 0.92660 0.99276 1.21130 0.99483 0.97602 0.95713 1.21446 0.94346 0.98921 0.96804 1.21153 0.99512 0.93437 1.00032 1.21239 0.96726 0.97954 0.92610 1.84529 1.50166 1.32361 1.39775 1.22348 0.99643 0.97560 0.98509 1.20864 0.92534 0.91532 0.92545 0.92732 0.90598 0.95346 0.91454 0.92164 0.89413 0.76362 0.78192 0.84834 0.84922 0.85282 0.84903 0.84219 0.91964 0.91204 0.95587 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.51 24.34 -169.99 -4.14 18.37 16 4 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 7 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -14.08 2.77 -172.32 -0.48 -14.56 16 10 C 0.13 2.82 4.20 -3.71 -0.02 2.81 16 11 C -0.14 -2.59 5.66 -26.59 -0.15 -2.74 16 12 C 0.15 2.35 2.41 -67.87 -0.16 2.18 16 13 N -0.71 -9.46 5.07 -55.09 -0.28 -9.74 16 14 C 0.60 8.72 7.75 -12.90 -0.10 8.62 16 15 O -0.51 -8.87 16.55 5.19 0.09 -8.79 16 16 C -0.10 -1.29 7.18 -36.82 -0.26 -1.55 16 17 C 0.06 0.66 11.64 -17.51 -0.20 0.46 16 18 N -0.48 -5.72 10.86 -11.44 -0.12 -5.84 16 19 C 0.26 2.88 7.88 -13.77 -0.11 2.77 16 20 C -0.03 -0.25 5.87 -104.99 -0.62 -0.86 16 21 C -0.08 -0.62 9.71 -39.17 -0.38 -1.00 16 22 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 23 C -0.10 -0.49 10.04 -39.48 -0.40 -0.88 16 24 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 25 C -0.07 -0.50 9.69 -39.17 -0.38 -0.88 16 26 O -0.18 -2.12 10.30 2.82 0.03 -2.09 16 27 C -0.14 -2.11 5.55 -26.61 -0.15 -2.26 16 28 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.08 1.83 4.49 -51.93 -0.23 1.60 16 31 H 0.03 0.63 7.07 -51.93 -0.37 0.26 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 35 H 0.40 4.46 8.39 -40.82 -0.34 4.12 16 36 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.13 0.89 7.89 -52.49 -0.41 0.47 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 1.01 7.83 -52.49 -0.41 0.60 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -33.05 374.14 -8.47 -41.52 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.99 Total: 1.83 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.99 Total: 0.54 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.11 Total: -57.03 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.11 Total: -10.88 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.05 -8.47 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003088331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.141 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds