Wall clock time and date at job start Wed Apr 1 2020 00:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21701 * 120.00388 * 0.02562 * 14 13 12 16 16 C 1.46577 * 119.99611 * 179.97438 * 14 13 12 17 17 C 1.36569 * 126.55836 * 179.71715 * 16 14 13 18 18 N 1.33315 * 107.64957 * 179.83591 * 17 16 14 19 19 C 1.31640 * 108.95895 * 0.43616 * 18 17 16 20 20 C 1.47697 * 125.54097 * 179.74803 * 19 18 17 21 21 C 1.39643 * 120.14972 * 179.69485 * 20 19 18 22 22 C 1.37936 * 119.84706 * 179.74750 * 21 20 19 23 23 C 1.38372 * 120.15350 * 0.53358 * 22 21 20 24 24 C 1.38372 * 120.30209 * 359.74123 * 23 22 21 25 25 C 1.37946 * 120.14974 * 359.97438 * 24 23 22 26 26 O 1.34206 * 108.91398 * 359.72477 * 19 18 17 27 27 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 28 28 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 29 29 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 31 31 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 32 32 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 33 33 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 34 34 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 35 35 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 36 36 H 1.07996 * 126.17401 * 359.95698 * 17 16 14 37 37 H 1.07999 * 120.07475 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.92662 * 180.27712 * 22 21 20 39 39 H 1.07994 * 119.85041 * 179.76658 * 23 22 21 40 40 H 1.07998 * 119.92267 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.07094 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.49848 * 178.74812 * 27 12 11 43 43 H 1.08999 * 109.49849 * 58.64620 * 27 12 11 44 44 H 1.09004 * 109.59094 * 246.19900 * 28 9 7 45 45 H 1.09001 * 109.59077 * 6.49172 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5965 -0.9816 -3.4483 16 6 7.8430 -2.7752 -4.9097 17 6 8.8856 -2.3149 -5.6622 18 7 9.1708 -3.2476 -6.5711 19 6 8.3435 -4.2602 -6.4189 20 6 8.3319 -5.4898 -7.2371 21 6 7.4047 -6.4998 -6.9721 22 6 7.3960 -7.6433 -7.7435 23 6 8.3104 -7.7957 -8.7708 24 6 9.2356 -6.8013 -9.0352 25 6 9.2516 -5.6501 -8.2754 26 8 7.5128 -3.9938 -5.3991 27 6 4.8755 -2.9898 -1.0921 28 6 4.2351 -2.2628 0.0946 29 1 -0.4850 0.8401 0.0004 30 1 2.9908 0.3501 -1.7559 31 1 4.5579 0.3822 -0.9097 32 1 3.7035 -1.5726 -3.0945 33 1 4.9277 -0.2876 -3.2372 34 1 6.2781 -1.3980 -1.4672 35 1 5.8557 -3.5342 -3.4126 36 1 9.3895 -1.3674 -5.5414 37 1 6.6937 -6.3843 -6.1674 38 1 6.6766 -8.4233 -7.5425 39 1 8.3016 -8.6946 -9.3693 40 1 9.9461 -6.9265 -9.8388 41 1 9.9740 -4.8746 -8.4832 42 1 5.6320 -3.6849 -0.7278 43 1 4.1091 -3.5392 -1.6388 44 1 5.0116 -1.7874 0.6940 45 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003088331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:25 Heat of formation + Delta-G solvation = 18.253649 kcal Electronic energy + Delta-G solvation = -28380.049802 eV Core-core repulsion = 24363.928995 eV Total energy + Delta-G solvation = -4016.120807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.57865 -41.09493 -39.99018 -39.20577 -36.47657 -35.97535 -34.15365 -33.48902 -32.05776 -31.99703 -31.95796 -30.29929 -27.11263 -25.57591 -24.64414 -24.46308 -23.71721 -22.95674 -22.39472 -21.77192 -21.34247 -19.62283 -18.85198 -18.42285 -18.12135 -17.69988 -17.08102 -16.91426 -16.31360 -16.05283 -15.95607 -15.73351 -15.40205 -15.38797 -14.88556 -14.76250 -14.64654 -14.56957 -14.39341 -14.12994 -13.94638 -13.88294 -13.46704 -12.75881 -12.75209 -12.61472 -12.45408 -12.27496 -12.25943 -12.09677 -11.96007 -11.80623 -11.64211 -11.51459 -11.35163 -10.93632 -10.77192 -10.26500 -9.98409 -9.42775 -8.98549 -8.18055 -5.49637 -0.80466 0.25630 0.39308 1.04804 1.28775 1.39224 1.39855 1.47908 1.86546 1.92572 2.39803 2.66769 2.79867 3.02843 3.31574 3.51772 3.67434 3.75179 3.86939 3.94978 3.98375 4.11952 4.17055 4.24034 4.26957 4.31842 4.42528 4.44690 4.54105 4.61417 4.64153 4.78988 4.81543 4.90504 4.95290 4.96012 5.05287 5.06368 5.12138 5.26497 5.34456 5.39881 5.44097 5.50825 5.85636 5.90528 6.11761 6.15038 6.38027 6.84576 6.89197 7.60086 8.00898 9.01400 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.002170 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.326613 B =12898.761376 C =13631.858324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.034 4.034 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.310 1.310 6 H -0.262 1.262 7 C -0.244 4.244 8 H 0.061 0.939 9 N -0.619 5.619 10 C 0.125 3.875 11 C -0.133 4.133 12 C 0.159 3.841 13 N -0.697 5.697 14 C 0.610 3.390 15 O -0.546 6.546 16 C -0.122 4.122 17 C 0.061 3.939 18 N -0.496 5.496 19 C 0.267 3.733 20 C -0.058 4.058 21 C -0.091 4.091 22 C -0.124 4.124 23 C -0.088 4.088 24 C -0.124 4.124 25 C -0.074 4.074 26 O -0.182 6.182 27 C -0.126 4.126 28 C 0.144 3.856 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.214 0.786 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.274 -18.224 -18.793 33.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.228 4.228 3 Si 0.768 3.232 4 H -0.207 1.207 5 H -0.239 1.239 6 H -0.187 1.187 7 C -0.373 4.373 8 H 0.078 0.922 9 N -0.344 5.344 10 C -0.001 4.001 11 C -0.173 4.173 12 C 0.055 3.945 13 N -0.347 5.347 14 C 0.396 3.604 15 O -0.425 6.425 16 C -0.177 4.177 17 C -0.084 4.084 18 N -0.224 5.224 19 C 0.066 3.934 20 C -0.060 4.060 21 C -0.111 4.111 22 C -0.142 4.142 23 C -0.106 4.106 24 C -0.141 4.141 25 C -0.094 4.094 26 O -0.069 6.069 27 C -0.165 4.165 28 C 0.019 3.981 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.252 0.748 36 H 0.231 0.769 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.829 -17.394 -18.923 33.722 hybrid contribution -0.917 1.115 0.710 1.609 sum 20.912 -16.279 -18.213 32.156 Atomic orbital electron populations 1.69951 1.07201 1.27094 1.55777 1.25855 0.95793 1.00651 1.00550 0.86040 0.78879 0.80955 0.77311 1.20744 1.23868 1.18685 1.18892 0.86595 0.93627 1.38230 0.92165 1.44535 1.08016 1.34567 1.47273 1.21287 0.96573 0.92112 0.90090 1.22263 0.98032 0.98945 0.98038 1.20885 0.93691 0.93697 0.86256 1.45967 1.32648 1.22500 1.33586 1.16394 0.79799 0.84181 0.80040 1.90901 1.65320 1.20067 1.66262 1.23058 1.04410 0.86779 1.03441 1.23917 0.94257 1.00172 0.90025 1.70647 1.25505 1.01549 1.24731 1.24643 0.85732 0.96062 0.86947 1.17544 1.01913 0.89081 0.97412 1.21497 0.96810 0.92973 0.99786 1.21463 0.99981 0.97381 0.95367 1.21869 0.93048 0.99524 0.96190 1.21483 0.99979 0.92613 1.00072 1.21363 0.96484 0.98833 0.92678 1.84512 1.50372 1.31942 1.40051 1.22174 1.00301 0.97284 0.96781 1.21103 0.92065 0.90692 0.94255 0.93000 0.93123 0.95155 0.91753 0.91970 0.90136 0.74810 0.76923 0.84583 0.82681 0.82310 0.82446 0.84595 0.88375 0.91019 0.94457 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.97 21.65 0.30 -59.57 16 2 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 3 Si 0.94 47.35 24.34 68.60 1.67 49.02 16 4 H -0.28 -13.63 6.62 99.48 0.66 -12.97 16 5 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 6 H -0.26 -12.74 6.64 99.48 0.66 -12.08 16 7 C -0.24 -13.57 10.03 84.03 0.84 -12.73 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.62 -28.42 2.77 -699.09 -1.94 -30.35 16 10 C 0.13 5.41 4.20 86.36 0.36 5.78 16 11 C -0.13 -4.69 5.66 30.68 0.17 -4.51 16 12 C 0.16 4.67 2.41 45.03 0.11 4.78 16 13 N -0.70 -17.29 5.07 -446.41 -2.26 -19.55 16 14 C 0.61 16.90 7.75 86.42 0.67 17.57 16 15 O -0.55 -18.46 16.55 -4.35 -0.07 -18.54 16 16 C -0.12 -2.99 7.18 24.06 0.17 -2.82 16 17 C 0.06 1.42 11.64 84.08 0.98 2.40 16 18 N -0.50 -11.64 10.86 -304.10 -3.30 -14.94 16 19 C 0.27 5.80 7.88 87.22 0.69 6.49 16 20 C -0.06 -0.98 5.87 -20.10 -0.12 -1.10 16 21 C -0.09 -1.20 9.71 22.54 0.22 -0.98 16 22 C -0.12 -1.05 10.03 22.23 0.22 -0.82 16 23 C -0.09 -0.57 10.04 22.33 0.22 -0.35 16 24 C -0.12 -1.02 10.03 22.23 0.22 -0.80 16 25 C -0.07 -1.01 9.69 22.54 0.22 -0.79 16 26 O -0.18 -4.06 10.30 -12.84 -0.13 -4.19 16 27 C -0.13 -3.43 5.55 30.67 0.17 -3.26 16 28 C 0.14 5.11 6.52 86.37 0.56 5.68 16 29 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.05 2.44 4.49 -2.39 -0.01 2.43 16 31 H 0.03 1.31 7.07 -2.38 -0.02 1.29 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 2.57 7.58 -2.39 -0.02 2.55 16 35 H 0.42 8.25 8.39 -92.71 -0.78 7.47 16 36 H 0.21 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.14 1.61 7.89 -2.91 -0.02 1.59 16 38 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 39 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 40 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 41 H 0.14 1.87 7.83 -2.91 -0.02 1.84 16 42 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 2.48 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -72.93 374.14 0.58 -72.36 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.15 Total: 12.75 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.16 Total: 13.01 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -7.20 Total: -124.42 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.20 Total: -22.73 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Total: -72.93 0.58 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003088331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.610 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds