Wall clock time and date at job start Wed Apr 1 2020 00:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00237 * 2 1 4 4 H 1.48498 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46896 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47023 * 59.99878 * 3 2 1 7 7 C 1.38819 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99473 * 163.07150 * 7 2 1 9 9 N 1.36933 * 120.00351 * 343.07196 * 7 2 1 10 10 C 1.46930 * 120.62642 * 331.85210 * 9 7 2 11 11 C 1.53198 * 108.77189 * 233.58573 * 10 9 7 12 12 C 1.53040 * 109.31061 * 305.36400 * 11 10 9 13 13 N 1.46505 * 109.45890 * 181.38586 * 12 11 10 14 14 C 1.34780 * 119.99826 * 154.99879 * 13 12 11 15 15 O 1.21480 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.48291 * 119.99707 * 180.02562 * 14 13 12 17 17 C 1.35672 * 118.86642 * 180.02562 * 16 14 13 18 18 C 1.42062 * 119.93157 * 180.02562 * 17 16 14 19 19 O 1.21931 * 121.06535 * 180.02562 * 18 17 16 20 20 C 1.47221 * 117.86274 * 0.27113 * 18 17 16 21 21 C 1.39579 * 121.36143 * 179.69937 * 20 18 17 22 22 C 1.36643 * 119.69456 * 180.02562 * 21 20 18 23 23 C 1.38881 * 120.55905 * 359.97438 * 22 21 20 24 24 C 1.37720 * 120.71679 * 359.50681 * 23 22 21 25 25 C 1.39288 * 119.71932 * 0.75109 * 24 23 22 26 26 N 1.36465 * 118.87004 * 0.02562 * 16 14 13 27 27 H 0.96998 * 119.18438 * 359.97438 * 26 16 14 28 28 C 1.53042 * 109.53713 * 61.36588 * 12 11 10 29 29 C 1.46922 * 120.63172 * 151.82617 * 9 7 2 30 30 H 0.97000 * 119.99881 * 0.02562 * 1 2 3 31 31 H 1.08991 * 109.58837 * 113.79971 * 10 9 7 32 32 H 1.08997 * 109.70464 * 353.43822 * 10 9 7 33 33 H 1.09002 * 109.49371 * 185.41316 * 11 10 9 34 34 H 1.08998 * 109.52433 * 65.32927 * 11 10 9 35 35 H 1.08995 * 109.46209 * 301.36001 * 12 11 10 36 36 H 0.97003 * 119.99875 * 334.99947 * 13 12 11 37 37 H 1.07998 * 120.03686 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.15520 * 0.02562 * 21 20 18 39 39 H 1.08000 * 119.71951 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.63968 * 179.97438 * 23 22 21 41 41 H 1.08005 * 120.13465 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.49625 * 58.59188 * 28 12 11 43 43 H 1.09008 * 109.49836 * 178.68006 * 28 12 11 44 44 H 1.08999 * 109.58418 * 246.19983 * 29 9 7 45 45 H 1.09003 * 109.58830 * 6.48357 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3700 -2.3623 0.3463 10 6 0.2259 -2.3398 1.2680 11 6 0.4973 -3.3188 2.4147 12 6 0.8118 -4.7005 1.8367 13 7 1.0394 -5.6472 2.9314 14 6 0.8359 -6.9651 2.7359 15 8 0.4643 -7.3680 1.6518 16 6 1.0658 -7.9232 3.8441 17 6 0.8544 -9.2448 3.6218 18 6 1.0670 -10.1824 4.6676 19 8 0.8839 -11.3748 4.4905 20 6 1.5103 -9.6676 5.9737 21 6 1.7352 -10.5230 7.0534 22 6 2.1457 -10.0083 8.2508 23 6 2.3415 -8.6417 8.4020 24 6 2.1359 -7.7806 7.3470 25 6 1.7119 -8.2823 6.1187 26 7 1.4826 -7.4453 5.0525 27 1 1.6202 -6.4914 5.1619 28 6 2.0672 -4.6172 0.9654 29 6 1.8137 -3.6530 -0.1976 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6771 -2.6404 0.7369 32 1 0.0966 -1.3344 1.6688 33 1 -0.3833 -3.3835 3.0538 34 1 1.3468 -2.9674 3.0003 35 1 -0.0282 -5.0407 1.2312 36 1 1.3365 -5.3254 3.7970 37 1 0.5248 -9.5837 2.6508 38 1 1.5854 -11.5869 6.9431 39 1 2.3194 -10.6698 9.0866 40 1 2.6658 -8.2508 9.3551 41 1 2.2906 -6.7194 7.4752 42 1 2.9022 -4.2534 1.5643 43 1 2.3041 -5.6062 0.5730 44 1 1.0401 -4.0606 -0.8483 45 1 2.7331 -3.5132 -0.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003262898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:10 Heat of formation + Delta-G solvation = -2.290523 kcal Electronic energy + Delta-G solvation = -28735.319268 eV Core-core repulsion = 24718.307599 eV Total energy + Delta-G solvation = -4017.011669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66468 -40.01433 -38.35896 -37.79858 -37.18505 -34.80080 -32.48034 -32.40335 -31.25058 -30.46561 -30.11126 -29.46344 -25.98675 -24.71020 -24.00569 -22.78740 -22.45282 -22.17305 -20.80769 -19.80213 -18.96753 -18.67698 -18.43329 -16.95576 -16.44075 -16.10421 -15.84894 -15.79563 -15.14255 -14.92125 -14.73013 -14.48150 -14.42337 -13.99415 -13.86799 -13.68957 -13.60743 -13.55351 -13.12823 -12.86743 -12.54046 -12.39030 -12.32895 -11.75919 -11.61853 -11.27331 -11.06237 -10.82500 -10.66098 -10.50762 -10.36957 -10.16213 -9.94061 -9.85775 -9.82639 -9.66147 -9.48439 -9.07460 -8.57099 -8.17966 -6.79667 -5.89279 -3.31915 0.10546 0.49333 1.12522 2.23507 2.47038 2.67841 2.88325 3.30098 3.38774 3.40584 3.60880 3.92438 4.14568 4.27423 4.41016 4.41173 4.64152 4.72042 4.84399 5.05757 5.14837 5.25619 5.33237 5.38631 5.40374 5.45057 5.45367 5.65251 5.72906 5.88776 5.92996 5.94155 6.08456 6.13076 6.17691 6.29648 6.37234 6.39244 6.42710 6.52562 6.61726 6.68616 6.85548 7.16855 7.20140 7.50162 7.53630 7.71119 7.80548 8.34417 9.10700 9.73457 10.29907 11.19784 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.002241 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.568416 B =12492.325699 C =13398.928902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.715 5.715 14 C 0.548 3.452 15 O -0.500 6.500 16 C 0.157 3.843 17 C -0.236 4.236 18 C 0.418 3.582 19 O -0.485 6.485 20 C -0.203 4.203 21 C -0.027 4.027 22 C -0.162 4.162 23 C -0.053 4.053 24 C -0.175 4.175 25 C 0.203 3.797 26 N -0.605 5.605 27 H 0.416 0.584 28 C -0.140 4.140 29 C 0.147 3.853 30 H 0.254 0.746 31 H 0.023 0.977 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.391 0.609 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.022 0.978 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -14.831 18.261 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.365 5.365 14 C 0.331 3.669 15 O -0.374 6.374 16 C 0.047 3.953 17 C -0.264 4.264 18 C 0.305 3.695 19 O -0.366 6.366 20 C -0.207 4.207 21 C -0.045 4.045 22 C -0.181 4.181 23 C -0.072 4.072 24 C -0.196 4.196 25 C 0.099 3.901 26 N -0.220 5.220 27 H 0.253 0.747 28 C -0.181 4.181 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.225 0.775 37 H 0.183 0.817 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.413 -15.603 17.277 23.529 hybrid contribution 0.644 1.631 0.567 1.843 sum 4.057 -13.973 17.844 23.024 Atomic orbital electron populations 1.70023 1.05272 1.25553 1.53826 1.25070 0.95308 0.98509 1.00733 0.86223 0.79367 0.83846 0.77336 1.20239 1.21643 1.21543 1.19226 0.92634 0.84665 1.41800 0.91529 1.44106 1.35780 1.01703 1.49924 1.20748 0.89024 0.97906 0.87587 1.22577 1.00655 0.94395 1.01115 1.21247 0.99134 0.88028 0.86893 1.46398 1.67818 1.06191 1.16133 1.18111 0.79180 0.82399 0.87185 1.90859 1.44773 1.77660 1.24105 1.20277 0.95326 0.95029 0.84666 1.22486 1.09591 0.90836 1.03445 1.18516 0.75802 0.88822 0.86384 1.90719 1.44577 1.17399 1.83895 1.20360 1.10403 0.91791 0.98158 1.20882 0.92519 1.00163 0.90960 1.20898 1.03649 0.95490 0.98102 1.21158 0.94702 0.93187 0.98120 1.20728 1.06745 1.00799 0.91290 1.17883 0.95294 0.89521 0.87357 1.41236 1.62024 1.10555 1.08156 0.74655 1.22406 0.96788 0.99901 0.98969 1.20875 0.98166 0.86471 0.92491 0.93560 0.95923 0.88845 0.92543 0.92024 0.89312 0.77542 0.81680 0.84337 0.85167 0.84903 0.84629 0.92136 0.92483 0.96000 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -13.94 2.99 -172.32 -0.52 -14.45 16 10 C 0.17 3.79 5.30 -3.71 -0.02 3.77 16 11 C -0.15 -2.37 5.55 -26.61 -0.15 -2.52 16 12 C 0.15 2.26 2.42 -67.89 -0.16 2.10 16 13 N -0.71 -8.16 5.07 -54.57 -0.28 -8.43 16 14 C 0.55 7.01 7.77 -12.12 -0.09 6.92 16 15 O -0.50 -8.31 15.84 5.38 0.09 -8.22 16 16 C 0.16 1.70 6.75 -82.59 -0.56 1.14 16 17 C -0.24 -2.96 9.49 -39.03 -0.37 -3.33 16 18 C 0.42 5.51 6.97 -34.47 -0.24 5.27 16 19 O -0.48 -7.69 17.34 4.98 0.09 -7.60 16 20 C -0.20 -2.15 5.89 -104.81 -0.62 -2.77 16 21 C -0.03 -0.24 9.61 -39.66 -0.38 -0.62 16 22 C -0.16 -1.04 9.97 -39.92 -0.40 -1.44 16 23 C -0.05 -0.29 10.01 -39.53 -0.40 -0.69 16 24 C -0.17 -1.07 9.91 -39.38 -0.39 -1.46 16 25 C 0.20 1.72 6.66 -84.00 -0.56 1.16 16 26 N -0.61 -4.75 5.32 -7.43 -0.04 -4.79 16 27 H 0.42 2.07 6.78 -40.82 -0.28 1.80 16 28 C -0.14 -2.31 5.65 -26.61 -0.15 -2.46 16 29 C 0.15 2.95 6.52 -3.72 -0.02 2.93 16 30 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 2.29 6.07 -51.93 -0.31 1.98 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 36 H 0.39 3.11 6.73 -40.82 -0.27 2.84 16 37 H 0.17 2.18 7.48 -52.49 -0.39 1.79 16 38 H 0.14 1.19 7.78 -52.48 -0.41 0.78 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -32.75 371.19 -10.04 -42.79 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.83 Total: 2.63 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -4.74 Total: 1.22 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.21 Total: -52.17 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.17 Total: -15.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.75 -10.04 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003262898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.496 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds