Wall clock time and date at job start Wed Apr 1 2020 00:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00237 * 2 1 4 4 H 1.48498 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46896 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47023 * 59.99878 * 3 2 1 7 7 C 1.38819 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99473 * 163.07150 * 7 2 1 9 9 N 1.36933 * 120.00351 * 343.07196 * 7 2 1 10 10 C 1.46930 * 120.62642 * 331.85210 * 9 7 2 11 11 C 1.53198 * 108.77189 * 233.58573 * 10 9 7 12 12 C 1.53040 * 109.31061 * 305.36400 * 11 10 9 13 13 N 1.46505 * 109.45890 * 181.38586 * 12 11 10 14 14 C 1.34780 * 119.99826 * 154.99879 * 13 12 11 15 15 O 1.21480 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.48291 * 119.99707 * 180.02562 * 14 13 12 17 17 C 1.35672 * 118.86642 * 180.02562 * 16 14 13 18 18 C 1.42062 * 119.93157 * 180.02562 * 17 16 14 19 19 O 1.21931 * 121.06535 * 180.02562 * 18 17 16 20 20 C 1.47221 * 117.86274 * 0.27113 * 18 17 16 21 21 C 1.39579 * 121.36143 * 179.69937 * 20 18 17 22 22 C 1.36643 * 119.69456 * 180.02562 * 21 20 18 23 23 C 1.38881 * 120.55905 * 359.97438 * 22 21 20 24 24 C 1.37720 * 120.71679 * 359.50681 * 23 22 21 25 25 C 1.39288 * 119.71932 * 0.75109 * 24 23 22 26 26 N 1.36465 * 118.87004 * 0.02562 * 16 14 13 27 27 H 0.96998 * 119.18438 * 359.97438 * 26 16 14 28 28 C 1.53042 * 109.53713 * 61.36588 * 12 11 10 29 29 C 1.46922 * 120.63172 * 151.82617 * 9 7 2 30 30 H 0.97000 * 119.99881 * 0.02562 * 1 2 3 31 31 H 1.08991 * 109.58837 * 113.79971 * 10 9 7 32 32 H 1.08997 * 109.70464 * 353.43822 * 10 9 7 33 33 H 1.09002 * 109.49371 * 185.41316 * 11 10 9 34 34 H 1.08998 * 109.52433 * 65.32927 * 11 10 9 35 35 H 1.08995 * 109.46209 * 301.36001 * 12 11 10 36 36 H 0.97003 * 119.99875 * 334.99947 * 13 12 11 37 37 H 1.07998 * 120.03686 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.15520 * 0.02562 * 21 20 18 39 39 H 1.08000 * 119.71951 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.63968 * 179.97438 * 23 22 21 41 41 H 1.08005 * 120.13465 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.49625 * 58.59188 * 28 12 11 43 43 H 1.09008 * 109.49836 * 178.68006 * 28 12 11 44 44 H 1.08999 * 109.58418 * 246.19983 * 29 9 7 45 45 H 1.09003 * 109.58830 * 6.48357 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3700 -2.3623 0.3463 10 6 0.2259 -2.3398 1.2680 11 6 0.4973 -3.3188 2.4147 12 6 0.8118 -4.7005 1.8367 13 7 1.0394 -5.6472 2.9314 14 6 0.8359 -6.9651 2.7359 15 8 0.4643 -7.3680 1.6518 16 6 1.0658 -7.9232 3.8441 17 6 0.8544 -9.2448 3.6218 18 6 1.0670 -10.1824 4.6676 19 8 0.8839 -11.3748 4.4905 20 6 1.5103 -9.6676 5.9737 21 6 1.7352 -10.5230 7.0534 22 6 2.1457 -10.0083 8.2508 23 6 2.3415 -8.6417 8.4020 24 6 2.1359 -7.7806 7.3470 25 6 1.7119 -8.2823 6.1187 26 7 1.4826 -7.4453 5.0525 27 1 1.6202 -6.4914 5.1619 28 6 2.0672 -4.6172 0.9654 29 6 1.8137 -3.6530 -0.1976 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6771 -2.6404 0.7369 32 1 0.0966 -1.3344 1.6688 33 1 -0.3833 -3.3835 3.0538 34 1 1.3468 -2.9674 3.0003 35 1 -0.0282 -5.0407 1.2312 36 1 1.3365 -5.3254 3.7970 37 1 0.5248 -9.5837 2.6508 38 1 1.5854 -11.5869 6.9431 39 1 2.3194 -10.6698 9.0866 40 1 2.6658 -8.2508 9.3551 41 1 2.2906 -6.7194 7.4752 42 1 2.9022 -4.2534 1.5643 43 1 2.3041 -5.6062 0.5730 44 1 1.0401 -4.0606 -0.8483 45 1 2.7331 -3.5132 -0.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003262898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:09 Heat of formation + Delta-G solvation = -23.464601 kcal Electronic energy + Delta-G solvation = -28736.237445 eV Core-core repulsion = 24718.307599 eV Total energy + Delta-G solvation = -4017.929846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50083 -41.06132 -39.24721 -39.14992 -38.05618 -36.25557 -34.06416 -33.27873 -32.16448 -31.73795 -31.29811 -30.69509 -27.36883 -26.03852 -24.75062 -24.00541 -23.63976 -23.39885 -21.93303 -21.19960 -19.89827 -19.52709 -19.25433 -18.66086 -17.36273 -17.27916 -16.84938 -16.72914 -16.66507 -15.89917 -15.83792 -15.52997 -15.35885 -15.21746 -15.06696 -14.87115 -14.73768 -14.53850 -14.37255 -14.30794 -14.11507 -13.24558 -13.06972 -13.03887 -12.88533 -12.64607 -12.56939 -12.29441 -12.25619 -12.01864 -11.88814 -11.69419 -11.54557 -11.30569 -10.79509 -10.62230 -10.56784 -10.25954 -10.06202 -8.91306 -8.71224 -7.88439 -5.33792 -0.76306 -0.18545 0.50167 1.42722 1.47784 1.50730 1.51744 1.60515 1.65707 2.06837 2.51915 2.89197 3.09676 3.27688 3.35404 3.57423 3.65868 3.77684 3.84941 3.95993 3.99208 4.26133 4.27696 4.34324 4.38177 4.44224 4.62315 4.66797 4.71048 4.77884 4.83436 4.89349 4.96922 5.01785 5.04063 5.13215 5.26715 5.30790 5.38278 5.46475 5.47226 5.52203 5.65338 5.71237 5.77804 5.96002 6.23494 6.39123 6.63187 6.79721 7.14781 7.84055 8.35972 9.18698 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.002241 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.568416 B =12492.325699 C =13398.928902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.176 3.824 11 C -0.129 4.129 12 C 0.161 3.839 13 N -0.694 5.694 14 C 0.554 3.446 15 O -0.540 6.540 16 C 0.186 3.814 17 C -0.265 4.265 18 C 0.408 3.592 19 O -0.536 6.536 20 C -0.226 4.226 21 C -0.050 4.050 22 C -0.151 4.151 23 C -0.045 4.045 24 C -0.162 4.162 25 C 0.191 3.809 26 N -0.583 5.583 27 H 0.433 0.567 28 C -0.126 4.126 29 C 0.143 3.857 30 H 0.251 0.749 31 H -0.006 1.006 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.146 0.854 38 H 0.128 0.872 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.007 0.993 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 -13.580 22.145 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.213 1.213 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.050 3.950 11 C -0.168 4.168 12 C 0.057 3.943 13 N -0.346 5.346 14 C 0.338 3.662 15 O -0.416 6.416 16 C 0.072 3.928 17 C -0.294 4.294 18 C 0.299 3.701 19 O -0.422 6.422 20 C -0.230 4.230 21 C -0.068 4.068 22 C -0.170 4.170 23 C -0.063 4.063 24 C -0.182 4.182 25 C 0.088 3.912 26 N -0.198 5.198 27 H 0.275 0.725 28 C -0.166 4.166 29 C 0.017 3.983 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.251 0.749 37 H 0.164 0.836 38 H 0.146 0.854 39 H 0.173 0.827 40 H 0.189 0.811 41 H 0.190 0.810 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.025 0.975 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.473 -14.329 21.236 26.196 hybrid contribution 0.043 1.269 -0.582 1.397 sum 5.516 -13.059 20.654 25.051 Atomic orbital electron populations 1.70176 1.06648 1.25876 1.55421 1.25793 0.96010 1.01465 1.01186 0.85224 0.78660 0.79904 0.76731 1.19075 1.22440 1.21347 1.19533 0.92851 0.85771 1.40920 0.91476 1.44369 1.35941 1.02144 1.50785 1.20587 0.87681 0.97930 0.88815 1.22285 1.02547 0.92971 0.99031 1.20845 0.97811 0.88213 0.87450 1.45957 1.67224 1.05103 1.16296 1.18238 0.78296 0.82672 0.86961 1.90858 1.46415 1.78352 1.25944 1.19781 0.94293 0.93614 0.85067 1.22302 1.12172 0.91844 1.03058 1.18873 0.75233 0.88286 0.87747 1.90676 1.47683 1.18967 1.84844 1.20331 1.12002 0.93388 0.97235 1.20955 0.94185 0.99809 0.91891 1.21261 1.01440 0.96789 0.97469 1.21666 0.92800 0.92427 0.99453 1.21188 1.04540 1.02791 0.89722 1.18064 0.96164 0.88601 0.88348 1.41172 1.60221 1.11489 1.06909 0.72541 1.22203 0.97689 0.98928 0.97824 1.20968 0.97476 0.85968 0.93912 0.94033 0.98753 0.91711 0.89917 0.90335 0.91515 0.74866 0.83590 0.85443 0.82660 0.81101 0.80973 0.90811 0.91935 0.97477 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.12 11.19 21.65 0.24 -52.88 16 2 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 3 Si 0.97 42.77 29.59 68.60 2.03 44.80 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.26 -13.60 9.58 84.04 0.81 -12.80 16 8 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -28.73 2.99 -699.10 -2.09 -30.82 16 10 C 0.18 7.72 5.30 86.36 0.46 8.18 16 11 C -0.13 -3.84 5.55 30.67 0.17 -3.67 16 12 C 0.16 4.57 2.42 45.02 0.11 4.68 16 13 N -0.69 -13.76 5.07 -444.86 -2.25 -16.02 16 14 C 0.55 13.41 7.77 86.92 0.68 14.09 16 15 O -0.54 -18.03 15.84 -3.65 -0.06 -18.09 16 16 C 0.19 3.80 6.75 40.51 0.27 4.07 16 17 C -0.27 -7.02 9.49 22.62 0.21 -6.80 16 18 C 0.41 11.48 6.97 25.58 0.18 11.66 16 19 O -0.54 -18.75 17.34 -5.09 -0.09 -18.83 16 20 C -0.23 -4.69 5.89 -19.98 -0.12 -4.80 16 21 C -0.05 -0.85 9.61 22.22 0.21 -0.64 16 22 C -0.15 -1.43 9.97 22.05 0.22 -1.21 16 23 C -0.04 -0.25 10.01 22.30 0.22 -0.03 16 24 C -0.16 -1.12 9.91 22.40 0.22 -0.89 16 25 C 0.19 2.68 6.66 39.12 0.26 2.94 16 26 N -0.58 -7.31 5.32 -177.43 -0.94 -8.25 16 27 H 0.43 2.18 6.78 -92.71 -0.63 1.55 16 28 C -0.13 -3.94 5.65 30.67 0.17 -3.76 16 29 C 0.14 5.74 6.52 86.36 0.56 6.30 16 30 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 31 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 36 H 0.41 4.62 6.73 -92.71 -0.62 3.99 16 37 H 0.15 4.31 7.48 -2.91 -0.02 4.29 16 38 H 0.13 2.35 7.78 -2.91 -0.02 2.33 16 39 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.17 -0.22 8.06 -2.91 -0.02 -0.25 16 41 H 0.17 -0.03 8.06 -2.91 -0.02 -0.06 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 Total: -1.00 -76.84 371.19 1.69 -75.15 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.21 Total: 9.83 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 5.06 Total: 15.11 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -5.05 Total: -107.97 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.15 Total: -36.92 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -76.84 1.69 -75.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003262898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.689 kcal (2) G-P(sol) polarization free energy of solvation -76.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds