Wall clock time and date at job start Tue Mar 31 2020 23:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48504 * 109.47225 * 272.89867 * 3 2 1 5 5 H 1.48501 * 109.47529 * 32.89708 * 3 2 1 6 6 H 1.48503 * 109.47265 * 152.90182 * 3 2 1 7 7 C 1.38809 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 339.36054 * 7 2 1 9 9 N 1.36940 * 119.99760 * 159.36601 * 7 2 1 10 10 C 1.46932 * 120.62720 * 332.59853 * 9 7 2 11 11 C 1.53188 * 108.77394 * 233.63217 * 10 9 7 12 12 C 1.53040 * 109.31679 * 305.36799 * 11 10 9 13 13 C 1.53046 * 109.53844 * 61.36421 * 12 11 10 14 14 H 1.08993 * 109.52239 * 58.60362 * 13 12 11 15 15 N 1.46499 * 109.50052 * 178.68884 * 13 12 11 16 16 C 1.34769 * 119.99944 * 204.84013 * 15 13 12 17 17 O 1.21549 * 120.00349 * 359.97438 * 16 15 13 18 18 C 1.47931 * 119.99810 * 179.97438 * 16 15 13 19 19 C 1.38261 * 119.24146 * 180.02562 * 18 16 15 20 20 C 1.40692 * 118.65230 * 179.97438 * 19 18 16 21 21 C 1.40240 * 122.05849 * 180.02562 * 20 19 18 22 22 C 1.36311 * 119.48024 * 179.97438 * 21 20 19 23 23 C 1.39242 * 120.94415 * 0.02562 * 22 21 20 24 24 C 1.36357 * 121.06309 * 0.02562 * 23 22 21 25 25 C 1.40041 * 119.59079 * 359.70505 * 24 23 22 26 26 C 1.41347 * 121.85748 * 179.76970 * 25 24 23 27 27 O 1.35494 * 119.95148 * 0.54560 * 26 25 24 28 28 N 1.31384 * 120.10034 * 180.26370 * 26 25 24 29 29 C 1.46921 * 120.63295 * 152.62580 * 9 7 2 30 30 H 0.96997 * 119.99911 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.59024 * 353.42088 * 10 9 7 32 32 H 1.08994 * 109.58673 * 113.70466 * 10 9 7 33 33 H 1.09003 * 109.49828 * 65.31593 * 11 10 9 34 34 H 1.08999 * 109.50020 * 185.41762 * 11 10 9 35 35 H 1.09007 * 109.46032 * 301.34818 * 12 11 10 36 36 H 1.08992 * 109.46556 * 181.38599 * 12 11 10 37 37 H 0.97007 * 119.99745 * 24.83504 * 15 13 12 38 38 H 1.08003 * 120.67556 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.25626 * 359.95818 * 21 20 19 40 40 H 1.08000 * 119.52241 * 180.02562 * 22 21 20 41 41 H 1.08005 * 119.47132 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.20556 * 180.02562 * 24 23 22 43 43 H 0.96704 * 114.00293 * 269.72508 * 27 26 25 44 44 H 1.09000 * 109.58710 * 6.57835 * 29 9 7 45 45 H 1.09000 * 109.58656 * 246.15386 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4363 2.0819 -1.3983 5 1 1.4796 2.6343 0.7604 6 1 3.5771 1.4233 0.6378 7 6 2.0102 -1.2021 0.0005 8 1 1.5223 -2.1073 0.3306 9 7 3.3138 -1.2403 -0.4174 10 6 3.8175 -0.2596 -1.3886 11 6 4.4618 -1.0102 -2.5582 12 6 5.5284 -1.9666 -2.0199 13 6 4.8746 -2.9913 -1.0900 14 1 4.1079 -3.5412 -1.6355 15 7 5.8911 -3.9255 -0.5998 16 6 5.5334 -5.1619 -0.2004 17 8 4.3673 -5.5019 -0.2464 18 6 6.5599 -6.1054 0.2940 19 6 6.1756 -7.3701 0.6992 20 6 7.1622 -8.2576 1.1667 21 6 6.8524 -9.5566 1.5948 22 6 7.8502 -10.3729 2.0375 23 6 9.1716 -9.9351 2.0710 24 6 9.5068 -8.6779 1.6630 25 6 8.5089 -7.8132 1.1966 26 6 8.8018 -6.4989 0.7666 27 8 10.0796 -6.0489 0.7888 28 7 7.8376 -5.7149 0.3401 29 6 4.2350 -2.2631 0.0964 30 1 -0.4850 0.8400 -0.0004 31 1 2.9910 0.3489 -1.7558 32 1 4.5584 0.3810 -0.9103 33 1 3.6989 -1.5785 -3.0903 34 1 4.9244 -0.2953 -3.2387 35 1 6.2779 -1.4005 -1.4668 36 1 6.0056 -2.4840 -2.8521 37 1 6.8217 -3.6540 -0.5628 38 1 5.1391 -7.6708 0.6578 39 1 5.8311 -9.9073 1.5741 40 1 7.6124 -11.3736 2.3669 41 1 9.9435 -10.6020 2.4259 42 1 10.5362 -8.3528 1.6945 43 1 10.3307 -5.6185 1.6175 44 1 3.6839 -2.9766 0.7090 45 1 5.0117 -1.7875 0.6952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007496776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:00 Heat of formation + Delta-G solvation = 8.050614 kcal Electronic energy + Delta-G solvation = -28858.343819 eV Core-core repulsion = 24841.780576 eV Total energy + Delta-G solvation = -4016.563244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45152 -39.66724 -38.32175 -37.75559 -36.74447 -34.46374 -32.74225 -32.44709 -31.64034 -30.80338 -30.06401 -28.97450 -25.29718 -25.05680 -24.40902 -22.65447 -22.54804 -21.93919 -20.79065 -19.78160 -19.00225 -18.35263 -17.93174 -16.94714 -16.69588 -16.22502 -15.76828 -15.63022 -15.26914 -14.93705 -14.71759 -14.39692 -14.07743 -13.98422 -13.86393 -13.59935 -13.43952 -13.17898 -12.81829 -12.43487 -12.37440 -12.22809 -12.13901 -12.03642 -11.65977 -11.49551 -11.14280 -10.88597 -10.71865 -10.50162 -10.37775 -10.12359 -9.94658 -9.71060 -9.61404 -9.58581 -9.42258 -8.97008 -8.51556 -8.38307 -6.93266 -5.89345 -3.25665 -0.19619 0.27454 1.38689 2.16905 2.98893 3.11899 3.26219 3.34774 3.51174 3.54474 3.70984 4.10468 4.15735 4.32512 4.43726 4.57208 4.60129 4.73879 4.86410 5.01095 5.06886 5.19913 5.27889 5.32483 5.34456 5.46042 5.49008 5.52159 5.58335 5.85608 5.89171 5.93516 5.98979 6.02607 6.08554 6.24054 6.31107 6.35151 6.46857 6.56459 6.65724 6.68207 6.81038 6.97263 7.01790 7.35061 7.75163 8.01141 8.33731 8.40130 8.99397 9.76887 10.12944 11.26622 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002399 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.131160 B =11668.789846 C =12315.110208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.121 3.879 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.123 3.877 14 H 0.092 0.908 15 N -0.701 5.701 16 C 0.567 3.433 17 O -0.525 6.525 18 C 0.084 3.916 19 C -0.093 4.093 20 C -0.023 4.023 21 C -0.102 4.102 22 C -0.098 4.098 23 C -0.114 4.114 24 C -0.084 4.084 25 C -0.108 4.108 26 C 0.351 3.649 27 O -0.473 6.473 28 N -0.484 5.484 29 C 0.145 3.855 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.406 0.594 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.404 0.596 44 H 0.067 0.933 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.112 -19.039 3.082 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.104 0.896 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.110 0.890 15 N -0.351 5.351 16 C 0.350 3.650 17 O -0.401 6.401 18 C -0.041 4.041 19 C -0.114 4.114 20 C -0.027 4.027 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.112 4.112 26 C 0.156 3.844 27 O -0.281 6.281 28 N -0.205 5.205 29 C 0.018 3.982 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.241 0.759 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.263 0.737 44 H 0.086 0.914 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 22.199 -18.506 2.202 28.985 hybrid contribution 0.872 0.550 0.730 1.264 sum 23.072 -17.956 2.933 29.382 Atomic orbital electron populations 1.69845 1.05692 1.26455 1.53115 1.25267 0.95232 0.97504 0.99612 0.86946 0.80010 0.84703 0.76965 1.21609 1.23207 1.19638 1.18954 0.84759 0.94898 1.39932 0.89553 1.44298 1.08710 1.32782 1.46744 1.21405 0.97434 0.92093 0.89466 1.21994 0.97824 0.98329 0.98946 1.21677 0.98390 0.96977 0.98370 1.21782 0.89948 0.89480 0.97021 0.88984 1.45944 1.12219 1.12846 1.64104 1.17752 0.86988 0.81927 0.78300 1.90854 1.17767 1.76986 1.54497 1.20699 0.89151 0.93799 1.00487 1.22262 1.01126 0.92292 0.95671 1.18083 0.91798 0.94954 0.97897 1.21086 1.00506 0.92111 0.98277 1.21062 0.92777 1.00085 0.97784 1.21025 0.96732 0.96121 0.99364 1.20951 0.98981 0.93462 0.96965 1.19037 0.94227 0.95678 1.02260 1.19089 0.84391 0.87659 0.93225 1.84728 1.21970 1.78540 1.42825 1.66837 1.00105 1.38257 1.15277 1.21212 0.92690 0.91336 0.92997 0.92809 0.90754 0.95617 0.91352 0.92185 0.91992 0.92335 0.75874 0.82380 0.84319 0.85115 0.85236 0.84457 0.73688 0.91403 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.97 55.49 0.78 -27.71 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.76 24.34 -169.99 -4.14 18.62 16 4 H -0.29 -7.11 6.62 56.52 0.37 -6.74 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.86 6.64 56.52 0.38 -6.49 16 7 C -0.26 -7.47 10.03 -15.06 -0.15 -7.62 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.60 -14.85 2.77 -172.32 -0.48 -15.33 16 10 C 0.12 2.68 4.21 -3.71 -0.02 2.66 16 11 C -0.13 -2.32 6.08 -26.61 -0.16 -2.48 16 12 C -0.12 -1.81 5.35 -26.69 -0.14 -1.96 16 13 C 0.12 2.20 2.60 -67.81 -0.18 2.02 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 N -0.70 -10.84 5.07 -54.61 -0.28 -11.12 16 16 C 0.57 9.30 7.76 -12.29 -0.10 9.20 16 17 O -0.53 -10.34 15.93 5.32 0.08 -10.26 16 18 C 0.08 1.15 6.73 -83.09 -0.56 0.60 16 19 C -0.09 -1.10 9.41 -38.65 -0.36 -1.46 16 20 C -0.02 -0.22 5.74 -106.84 -0.61 -0.84 16 21 C -0.10 -0.76 9.81 -39.52 -0.39 -1.15 16 22 C -0.10 -0.57 9.95 -39.90 -0.40 -0.97 16 23 C -0.11 -0.64 9.95 -39.89 -0.40 -1.04 16 24 C -0.08 -0.57 9.58 -39.58 -0.38 -0.95 16 25 C -0.11 -1.03 5.76 -106.66 -0.61 -1.64 16 26 C 0.35 3.64 7.80 -16.56 -0.13 3.51 16 27 O -0.47 -3.70 12.83 -18.18 -0.23 -3.93 16 28 N -0.48 -6.08 9.47 -9.60 -0.09 -6.17 16 29 C 0.14 3.08 6.09 -3.71 -0.02 3.06 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.07 1.79 4.50 -51.93 -0.23 1.56 16 32 H 0.03 0.56 7.07 -51.93 -0.37 0.19 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.41 5.47 7.90 -40.82 -0.32 5.15 16 38 H 0.16 1.79 7.59 -52.48 -0.40 1.39 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.14 0.66 7.65 -52.49 -0.40 0.26 16 43 H 0.40 1.17 9.06 45.56 0.41 1.58 16 44 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -35.91 367.36 -8.63 -44.54 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.11 Total: 4.29 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -4.70 Total: 1.52 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.07 Total: -60.32 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.15 Total: -14.19 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.14 Total: 18.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.91 -8.63 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007496776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.592 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds